KEGG   Solanum tuberosum (potato): 102583085
Entry
102583085         CDS       T02981                                 
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4-like
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
sot  Solanum tuberosum (potato)
Pathway
sot03018  RNA degradation
sot03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sot00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102583085
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102583085
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sot03019]
    102583085
   03041 Spliceosome [BR:sot03041]
    102583085
Messenger RNA biogenesis [BR:sot03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     102583085
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     102583085
Spliceosome [BR:sot03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    102583085
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 102583085
NCBI-ProteinID: NP_001274903
UniProt: Q38JH9
LinkDB
Position
Un
AA seq 147 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRGDRKPPGVGGRGRGRGGRDEGAAGRQAKGIGRGM
EDAGAKGRGKGGPGAKSGGKGGGRGRG
NT seq 444 nt   +upstreamnt  +downstreamnt
atgcttcccctctctttgctcaagactgcacaggggcatcccatgttggtggagctaaaa
aatggagagacttataatggtcatttggtgaattgtgatacttggatgaatatccatctt
cgtgaagttatctgtacatcaaaggatggagatagattttggagaatgcctgaatgttat
attcgtggcaataccataaagtatcttagagttcctgatgaggtgattgataaagttcaa
gaagaaacaaaaagccgtggagatagaaaaccacctggtgtcggtggacgaggaagggga
agaggaggtagggatgaaggtgctgctggaagacaggcgaaaggcattgggcgtggaatg
gaagatgcaggtgccaaaggccggggcaaaggaggacctggtgccaagtctggtggaaaa
ggtggtggccgtggacgtggctaa

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