Solanum tuberosum (potato): 102583960
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Entry
102583960 CDS
T02981
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102583960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sot03019
]
102583960
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102583960
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
102583960
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
102583960
NCBI-ProteinID:
XP_006347914
LinkDB
All DBs
Position
Un
AA seq
2418 aa
AA seq
DB search
MIPFGSAASTQIRFLFQSLNGSNSDTVFHELRQYLAYGVEGSILLLRTCIDHLNVYGKDS
KNTQLDPVFASIFRCILDKPNFSTVFSESLKDTAISEEFLVNLSNAFHLAISEKIGVGLA
LSDSENVDVKKCGTNYCMGQIAELRSTNSSLDDAKHIQNVLLFLNQSEGLSKHVDLFMHL
LSLIQSKEAQFILTPLLSDELHEANFLRNLDFLNDDGEDDFDVLLADMEKEMSIADIMKE
LGYGCTASILQCKEMLSLFLPLTEVTVARILGMVVRTRSGIEDNLNMFSTFRTALGSISA
ADPSPLSSWNADVLIDAIKQLAPGLNWVTVLDNFDHEGFYIPDGAAFSFLMSIYKHACQD
PFPLGTICGSIWKNAEGQLSLLKYAVSVPPEVFTFAHSKRQLDCADAVNDHKIQNGHANH
AWLCLDLLEVLCQLAEIGYASSVRSILEHPLKHCPEVLLHGMAHINTAYNLLQHEVAAAA
FPVMLKNAAARGMILHLWHVNTSILCWGLVEALDVDLDNMHTVLDACQELKILSSVLDRI
PFAFGIRLAALASRKELLDLEKWLSNNLNTYKDTFYEACLKFLREIHLAALDDASNHFDP
PSALLTIYSETSSTFLKVLKSHSGLVSSRHLSEELDKLHITYMDANSRLKSVGGADSSTS
DGGGSDAIEAEANVYFHQMFSGQLSNDATVQMLARFKESTEKREQAIFECMIGNLFEEYK
FLSKYPDRQLKIAAVLFGSLIKNQLVTHLALGIALRAVLDALRKPADSKMFVFGILALEQ
FVDRLIEWPQYCNHILQISHLRVANSELVAFIERALARISLTHSESEVGHSPAVDQFHGP
IPSSPMNSEGQTFQVVGQSGLQQSMQGPSSSQLPLRQQSSIEERKPSAALSGYLKPALSP
AVQPATVPSSDNAGIQKPQGPSSTSAVLTSSPGFLRPSRAITSGRFGSALNIETLVAAAE
RRETPIEAPASEIQDKISFTINNLSAANIEAKAKEFTEILKEQYYPWFAQYMVMKRASIE
PNFHDLYLKFLDKANSKSLFKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKI
TIGKNHVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILE
LLAEIYAMPNLKMNLKFDIEVLFKNLGVDLKEVVPSSLLKDRVREVEGNPDFSNKDAGGS
SQPQMVADAKSGIISSLNQVELPLEVGSPHPSGPSRILTQYAAPLHLPSAPMTEDEKLAA
LGLSDQLPSAQGLLQGQSPFSVSQLPATASNIEQQVVVNPKLHALGLQLHFQSVLPIAMD
RAIKEIVSSIVQRSVSIATQTTKELVLKDYAMESDETRIRNAAHLMVASLSGSLAHVTCK
EPLRGSISGQLRNLLQGLTIASDLLEQALQLVTNDNLDLGCAMIEQAATEKAIQTIDGEI
AQQLAIRRKQREGPGASFFDASPYTQGHMGGLPEALRPKPGRLSHSQQRVYEDFVRLPWQ
NQSSQSSNAVTAVPSTSSSSVGVSRAYMSGTGQMNSNLYSSGLMNAVITAVPQPLEISEE
IDTSSQLNSASSPHLGMGDSVTSSSFETEAIVEPFTLVSAPESHPVESSSLAKESGASLQ
PSNATATSERVGNSISEPLLTTGDALDKYQIISEKLENLVSEEAEEAEIQALIAEVPVII
LKCISRDEAALAVAQKAFKGLYENATNSAHVGAHLAILSSIRDVSKLFVKELTSWVTYSD
EERKFNKDITVGLIRSELLNLAEYNVHMAKLLDAGRNKSATEFAVSLIQTLVISDSRVIS
ELQNLVDALAKIAARPGSPESLQQLVEIAKNPGANAAALSSVSFGKEDSNKQSRDKKIAV
TATGTREDYGVSECIEPDSASFREQVSMLFAEWYRICEIPGANDATHAHYILQLNQSGLL
KGDETSERFFRRLTELSVSHCLSSEVMSSTTQSHQAQPLSFLAIDIYAKLVFSILKFYPV
DQGSSKLLLLPKVLAVTVRFIQRDADEKKMIFNPRPYFRLFINWLVDLSSLDPVFDGANF
QVLTALANAFHALQPLKVPGFSFAWLELVSHRSFMPKLLAGNAQKGWPYFQRLLVDLFQF
MEPFLRNAELGEPVQFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNIILS
AFPRNMRLPDPSTPNLKIDLLAEISQSPRILSEVDAALKSKQMKGDVDEYLKTRQQGSPF
LSELKQKLLLSPSEAAKAGTRYNVPLINSLVLYVGMQAIQQLQAKTPHAQSMPSSVPFAV
FLVGAALDVFQTLIMDLDTEGRYLFLNAVANQLRYPNNHTHYFSFILLYLFAESNQEMIQ
EQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWSRPFTRCAPEIEKLFESVSRSCG
GPKPVDENVVSGGISDIH
NT seq
7257 nt
NT seq
+upstream
nt +downstream
nt
atgattcctttcggctccgctgcttctactcagattcggtttctgttccagagtttgaac
ggttccaattctgacactgttttccatgagctccgtcagtatctggcatatggagttgaa
gggagcatattgctgcttcggacctgcatcgatcatctgaatgtttatgggaaagactcg
aagaacacacagctggatcctgtatttgcttccattttcagatgcatcttggacaagcca
aatttcagcactgttttttctgaatccctcaaggatactgcaatcagtgaggagttttta
gtgaatctatcaaatgctttccacttggcaatatctgaaaaaattggagttggccttgct
ttgtcagactcagaaaatgttgatgtcaagaaatgtggaaccaactattgcatgggccag
attgcagagttacgttccaccaactcttctttagatgatgccaagcatattcagaatgtt
cttttgtttctgaatcaatctgaaggcctctctaagcatgtagacttgtttatgcatttg
ctatcactcatccagtcaaaagaagcccagttcattttaactccattgctatctgacgaa
cttcatgaagctaactttttgaggaacttagatttcttaaatgacgacggtgaagatgat
tttgatgttcttttggcagatatggagaaagaaatgagtatagcagacataatgaaggaa
ttgggttatggatgcactgcttctatcttgcaatgcaaagaaatgttatccttatttttg
ccgctgactgaagtgactgttgctaggatacttggtatggttgtacgtacccgttcaggc
atcgaggataaccttaacatgttctcaacgttccgtactgctcttggtagcatctctgca
gctgatccatcaccattgagttcctggaatgccgacgtccttattgatgcaattaagcaa
cttgctcctggacttaactgggtaactgttttagataacttcgatcatgagggtttctat
attcccgacggggcagccttttcctttttgatgtccatttacaaacatgcctgtcaggat
ccttttcctcttggaactatttgtggttctatctggaagaatgctgagggtcagctttcc
ttactcaagtatgctgtgtcagtgcctcctgaagtatttaccttcgcacattctaagagg
caactggattgcgctgatgcggtgaatgaccataaaatccaaaatggacatgcaaatcac
gcatggttgtgtcttgaccttctcgaagttctttgccagctggctgagataggttatgca
agctctgtgcggtccatcctggagcaccctctgaagcactgtccagaagtcttgcttcat
gggatggcccacattaatactgcatataatctcctccagcatgaagttgccgctgctgct
tttcctgttatgctaaaaaatgctgctgctaggggtatgattcttcatttgtggcatgtt
aatactagcatcttgtgttggggtcttgtagaagcattggacgttgatctggacaacatg
cacacagttttggatgcctgtcaagagcttaagattctatcatcagtactagataggata
ccttttgctttcggcatcagacttgctgcccttgcttcccgcaaagaactcttggattta
gagaaatggttgagcaataacttaaacacatataaagataccttctatgaggcatgccta
aagttcttgagggaaatacatctcgctgctctagatgatgcttccaaccattttgatccc
cccagtgctcttttgactatttattcagaaacttcttctacctttttaaaggtccttaag
tctcattctggcttagtttcttcgcgccacttatctgaggagctggacaagttgcacata
acatacatggatgctaattcaaggcttaaaagtgttggtggtgctgattcatccacttct
gatggtggtggttctgatgctattgaagcagaagcaaacgtgtacttccatcaaatgttc
tctggtcagctgagtaatgatgcaacagttcaaatgcttgctcgtttcaaagaatcaact
gaaaagagggagcaagcaattttcgagtgcatgatcggtaatctgtttgaagaatacaaa
tttctctccaagtacccagacaggcagcttaaaattgcagctgttctatttgggtcactt
attaagaatcagctggtaactcatcttgcacttggtattgccttgcgagctgtcttggat
gcattgcgcaagcctgctgattcgaagatgtttgtttttgggattttggcacttgaacag
ttcgttgatcgtctgattgaatggccccaatattgcaaccatatcttgcaaatatctcat
ctccgagtagctaattcagagcttgttgcattcattgaacgggcacttgctaggatatca
ctgacacattctgagtcagaggtaggccacagtcctgctgttgatcaattccatggtcct
atcccatcttccccaatgaattccgagggtcaaacatttcaagtggttggacagagtggt
ttgcagcaaagtatgcaaggaccctcttcaagccagcttcctctgaggcaacaaagctcc
atagaggagaggaaaccctctgctgctctctctggctacttgaagccagctttatcacct
gcagtgcaacctgccacagttccttcaagtgataatgctggcattcagaagccacaaggt
ccaagcagtacttcagcagtactgacatcttctcctggttttcttcgcccatctagagcc
attacctcaggaaggtttggttctgcactgaatattgaaacacttgttgcagctgcagag
agaagagaaacacccatagaggctcctgcatcagaaatacaggataagatttcatttact
atcaataacttatctgcggcaaatattgaggctaaagcaaaagagttcactgaaattttg
aaagagcagtactacccatggtttgctcagtatatggtgatgaaaagagcaagcattgag
ccaaattttcatgacttgtacctgaagttcttagataaagccaattcaaaatctctgttc
aaggagattgtccaagcaacctacgagaactgcaaggttcttttagggtcagagttgata
aagtcaagttcagaagagcgttctttgctgaaaaaccttggaagctggctaggcaaaatc
acaattggaaagaatcatgtcttgagggcgcgggagattgatccgaagtctttgattatt
gaggcatatgaaaaaggtttgatgattgcagttattcctttcacatcgaagattctggaa
ccatgccaaagcagtctagcataccaaccacctaacccatggaccatgggcattcttgaa
ttacttgctgagatttatgcaatgccaaatcttaaaatgaacctcaagtttgacattgag
gtcctgttcaaaaatcttggtgtggatctaaaagaggtagttccaagttctcttcttaaa
gaccgagtgagagaagtggaaggaaatcccgacttctcaaacaaggatgctggtggatct
tcccaaccacagatggtggctgatgccaaatctggcattatatcttcactaaaccaggtt
gaattaccacttgaggttggcagtcctcatcctagtggcccttcacgaattttaactcag
tatgctgctccgcttcatcttccatctgctccaatgacggaggatgagaagcttgcagcg
cttggcctgtctgatcagcttccttctgctcaaggtcttttacaagggcaatcaccattc
tctgttagtcagcttcctgcaactgcatccaatatagagcagcaagttgttgtcaatcct
aagcttcatgctctgggcctgcagttgcattttcagagtgtacttcctattgctatggat
agagctatcaaagagatagtgtccagcattgtgcagcgcagtgtttctatagcaactcag
actacaaaggaacttgttttgaaggactatgccatggaatcggatgagacccggatacgt
aatgctgcacatttgatggtcgccagcctgtctggaagccttgctcatgtgacatgcaag
gaacctttacgtggttcgatatcaggccagcttcgtaatttacttcagggattgaccatt
gcaagtgacctccttgaacaagctcttcagcttgttactaatgacaatctcgatcttggc
tgtgccatgattgaacaagcagctacagagaaggctatacagactattgatggagaaata
gctcaacagctggccataaggaggaaacagagagagggccccggtgcctcattctttgat
gcaagcccttatacacaaggtcatatgggtgggttaccagaagctcttcgccctaaacct
ggccgcttatcccattctcagcaacgcgtttatgaggatttcgtccgcttaccttggcaa
aatcaatcaagccaaagctcaaatgctgtgactgctgttccttcaacttcttccagcagt
gttggtgtctccagggcgtatatgtcaggaactggacaaatgaactccaacctttactcg
tctggccttatgaatgcagtaataactgctgttccgcagccattggaaatatcagaagag
atagatacttcatctcaacttaatagtgcttcctctccccatcttgggatgggtgatagt
gtcacttctagcagttttgaaacggaggctattgttgaaccattcacattggtctcagct
cctgaatcgcatccagtggaatcatccagtcttgcaaaggaatcgggagcttccttacag
ccatcaaatgcaacagctacctctgaacgtgttggaaatagtatctccgagccgttgctg
actactggtgatgcgttggataagtaccagattatctctgaaaagcttgaaaacttggtg
agtgaagaagctgaagaggcagaaattcaggcacttattgctgaagttccggtaatcatc
ctcaaatgtattagtagagatgaggccgccttggcagttgcccagaaggctttcaaggga
ttgtatgagaatgctacaaatagtgcacatgttggtgcccatcttgctattctgtcttca
atccgtgatgttagcaagctttttgttaaggagctaactagttgggttacttactctgat
gaggagaggaagttcaacaaagacattacagttggtttgattcgtagtgaactgctaaac
cttgctgagtataatgtgcacatggctaaattacttgatgctggcagaaacaagtctgct
actgaatttgctgtatctctaattcaaacactggtgataagtgattctagagtcatatcc
gagctacagaaccttgttgatgcacttgctaagattgcagccagaccaggttctcccgag
tctttacaacaacttgttgagattgctaagaaccctggtgctaatgctgctgcgctgtct
agtgtatcttttgggaaggaggatagcaacaagcaatctagagacaaaaagattgctgtg
actgctactggtaccagagaagattatggagtttctgaatgtattgaaccagattctgca
agtttccgcgagcaggtctctatgttgtttgctgagtggtaccgtatttgtgaaattcct
ggggcgaatgatgcaactcatgctcattatatcttgcaattaaaccagagtggcctatta
aaaggcgatgaaacttcagagcgttttttccgcagactcacggaactttctgtttcacat
tgtctttcgtctgaggtcatgagttccacaactcagtctcaccaagcacaaccactatca
ttccttgcaatcgatatctatgccaaattagtgttctcaattttgaagttttatcctgtg
gatcaaggatctagtaaattattgctgctgccaaaggttctcgctgtcactgtaagattc
atccagagggacgctgatgaaaagaagatgatctttaatcctaggccatattttaggctt
ttcattaattggttagtggatctcagttccctggaccctgtttttgatggtgcaaatttt
caggttttaacagctttagccaatgctttccatgctcttcagcccctcaaagttccagga
ttcagctttgcatggcttgaacttgtaagtcaccgaagttttatgcctaaactacttgct
ggaaatgctcagaaggggtggccttactttcaacgactattggtggatctcttccagttt
atggagccctttctgaggaatgctgagctaggagaaccggttcagtttctgtataaaggg
actctcagggttttgttggttctcctccatgattttccggagttcctctgtgactaccat
ttcagcttctgtgatgttatccctccaagctgcatacagatgcgaaatataattttaagt
gcatttcctcgcaacatgaggcttcctgatccatcaactcccaacttaaagattgatcta
ctcgcagagattagtcaatcccctcgcattctttctgaagttgatgcagctcttaaatca
aagcagatgaagggtgatgtagatgaatacctgaagacaaggcaacaggggtctccattt
ttgagtgaattgaagcagaagttactgctctctccaagtgaagccgccaaggctgggacg
cgctacaatgtacccctgatcaactcccttgtactctatgttggaatgcaggctatccag
cagctgcaggcaaaaactcctcatgctcagtcgatgcccagtagtgttccatttgcagta
ttcttggttggtgctgctctagatgtattccagactttgataatggacttggacaccgag
gggcgttacttgtttttaaacgcagtcgctaaccaattgcgatacccaaataatcacaca
cattacttctcctttattctgctctacctatttgcggaatcaaaccaggagatgatccaa
gaacagataaccagggtcctattagaacgcctgattgtaaatcgacctcatccatggggt
cttctgatcacattcattgagctgataaagaatccaaggtacaatttttggagtcgacca
tttacaagatgtgccccagagatcgagaagctgtttgaatccgtctcaagatcgtgtggt
ggccctaaacctgtggatgagaacgtggtgtcaggtggaatatctgatatccattag
DBGET
integrated database retrieval system
