KEGG   Solanum tuberosum (potato): 102604147
Entry
102604147         CDS       T02981                                 
Name
(RefSeq) replication factor C subunit 1
  KO
K10754  replication factor C subunit 1
Organism
sot  Solanum tuberosum (potato)
Pathway
sot03030  DNA replication
sot03410  Base excision repair
sot03420  Nucleotide excision repair
sot03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sot00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    102604147
   03410 Base excision repair
    102604147
   03420 Nucleotide excision repair
    102604147
   03430 Mismatch repair
    102604147
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sot03032]
    102604147
   03400 DNA repair and recombination proteins [BR:sot03400]
    102604147
DNA replication proteins [BR:sot03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    102604147
DNA repair and recombination proteins [BR:sot03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     102604147
SSDB
Motif
Pfam: RFC1 BRCT AAA PTCB-BRCT Rad17 AAA_30 AAA_5 AAA_22 DNA_pol3_delta AAA_19 BRCT_2 AAA_assoc_2 RuvB_N AAA_14 Gp44_lid AAA_18 nSTAND3 AAA_17 NTPase_1 PHTB1_C AAA_16 Sigma54_activ_2 Zeta_toxin KTI12 RNA_helicase RsgA_GTPase AAA_33 SurA_N Bro-N AAA_3
Other DBs
NCBI-GeneID: 102604147
NCBI-ProteinID: XP_006343612
LinkDB
Position
Un
AA seq 993 aa
MSDIRKWFMKQHDKGTGNGSMSKNSAAEKPSLISPKPENLVQEGQETTNRRKTSKYFATD
KVKAKEEKVEEVSAKRKAQSTAGSSSANERPPAAKKIHKAEDDDDFVPLVSGRGSAQKNV
ISDDSDDDLKNKKSDLKPGGRGRGGRAAKTSGKGVPLDESEDDASAVKDNKSGGRGRGGK
GPSAAPSGGRGRGGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLE
REEAEDLIKRHGGRVTGSVSKKTTYLLCDEDVEGRKSSKAKELGTAFLTEDGLFELIRSS
KKSKSATQPESKKSADIIVSSGKRNSQNTSDGTGSTATKILAAKPLAPSASPAKSSASPA
KRKTQAKESLLPWTEKYRPKAIVDIIGNKSLVEQIQRWLESWDEHFLKAASKGKGKKQND
SGAKKAVLLSGMPGIGKTTSAKVVSQMLGFQTIEVNASDSRGKADSKIEKGISGSTANSI
KELVSNESLSANIGRSHHQKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDR
YSQKLKSLVNYCLPIVFRKPTKQQMAKRLKQVANAEGIQVNEIALEELAERVGGDMRMAL
NQLQYMSLSKSVIQYDDIRRRLLSSSKDEDISPFKAVEKLFDFNAKNLKIDQRIDLSMSD
PDLVPLLVQENYLNYKPSSAGKDDNDLKRMSLIAHAADSIANSDLINVQIRRYQQWQLSP
AGCLSSCIIPASLLHGQRQTLEQGERNFNRFGGWLGKNSTMGKNYRILEELHVHLLASRE
SYLGRANLRLDYFSLLGKKLTDPLKMLPKDEAVENVVAFMDSYSISQEDFDNIVEISKFK
GHLNLLDGVQPAVKAALTKAYNKGSKSRVIRTADLITLPGIKKAPKKRIAAMLEPLDEGV
AEENDETLAEDEENSSETEDIADVGKKLQSDLQSLSSRGIQVNMDLKGAGSSGGKKPSAG
RGRGRGSSNSSASAESSGKRGGRGSGAAAKRKR
NT seq 2982 nt   +upstreamnt  +downstreamnt
atgtcagatatcaggaaatggttcatgaagcagcatgacaaaggcacgggtaatgggagt
atgtccaagaatagtgcagcagaaaagccttctctcattagtccaaagccagaaaacctg
gtacaagaaggacaagagactaccaacagaaggaaaactagtaaatattttgctacagac
aaggtgaaggcaaaagaagaaaaagttgaggaagtgtcagcaaaaagaaaagctcaaagt
actgctggaagttcatcagctaatgagaggccaccagctgcaaaaaaaattcacaaagct
gaggatgatgatgactttgtaccattggtatctggaaggggatctgcgcagaaaaatgtg
atcagtgatgatagtgacgatgatcttaagaacaaaaaatctgatctcaaacctggtgga
agagggcggggaggacgggcagctaagaccagtggaaagggtgtccctcttgatgaaagt
gaagatgatgcctcagctgtcaaggacaacaaatctggtggacgagggcgtggtggtaaa
ggaccatctgcagcaccaagcggtggacgaggtagaggtggtggaggacggggaggtttc
atgaactttggtgaaagaaaagaccctcctcacaagggggaaaaggaagttcctgaaggt
gccccagactgtttagctggtttgacttttgtaattagtggaactctcgacagtttagaa
agagaagaagctgaggatttgattaaacgccatggtggtcgtgtcacaggatctgttagc
aagaaaacgacttatcttttatgtgatgaagacgtcgagggacggaaatcatctaaagcc
aaggagctcggaactgcatttctcactgaggatggtttgtttgaattgatccggtcatcg
aaaaaatcaaaatcagctacacaacccgaatcaaagaaatctgcggacatcattgtttct
tctggaaagagaaattcacaaaatacaagtgatggaactggaagcactgccacaaagatt
ctagctgccaaaccattggcacctagtgcatctcctgccaaaagtagtgcatctcctgcc
aagaggaaaacccaagctaaagagtctttactaccatggacagaaaaatacaggcccaaa
gctattgtagacataataggaaacaagtcactggtggagcagattcagcgttggctagag
agctgggatgagcattttctaaaggcagctagtaagggtaaggggaaaaaacagaatgac
tctggtgctaaaaaagcagttctgttgagtggtatgccgggtatagggaagactacatca
gcaaaagtggttagtcagatgctgggttttcaaaccatcgaggtaaatgctagtgatagt
cgtggaaaggccgactcaaaaattgagaaaggaattagcggaagtactgctaattccata
aaagaacttgttagcaatgaatctctaagtgctaatattggcagatcacaccatcagaag
actgttctgattatggacgaggttgatggcatgtctgctggagatagaggtggtgttgct
gatcttattgctagcatcaagatctcgaaaattcctattatctgcatttgcaatgatcgc
tacagtcagaaattgaagagccttgtcaattattgcctaccaattgtcttccgtaaacca
actaagcagcagatggcaaagaggttaaagcaagtggcaaatgctgaaggcattcaagtc
aatgagattgctcttgaggaattggcagaacgtgttggaggagatatgcgtatggctcta
aatcaattgcaatacatgagtctctccaagtctgtcatccaatacgatgatataagacgc
cgccttctaagcagttcaaaggatgaagacatctcaccgttcaaagctgtagaaaagctg
tttgattttaatgccaagaacttgaaaatagatcaaagaattgacctaagtatgagcgac
ccagatcttgtcccgcttcttgtccaggagaactatctcaactacaaaccaagttctgct
ggcaaagatgataatgatttaaagcggatgagcctaattgcgcatgctgctgactctatt
gcaaatagtgacttaataaatgtacagattcgaagataccagcagtggcaactttctcca
gctggttgcctttcgtcttgcataattcctgcttctttgttgcacggacagaggcagact
cttgagcagggagagcgcaactttaacagatttggtggctggctaggaaagaactctaca
atgggaaagaattaccggattctggaggaattgcatgttcacctactcgcatctcgtgaa
tcatatctgggaagggcaaacctgagacttgactacttttctcttcttggaaagaagttg
acagatccattaaaaatgctgcctaaggatgaagctgtagagaatgttgttgcttttatg
gattcatactctataagccaggaggactttgataatattgtggagatatcaaaattcaag
ggacatctgaatcttctggatggtgtacagcctgctgtgaaagcggcgctgacaaaggca
tacaacaaaggaagcaaatcacgtgtaattcgcacagcagatttaattacccttcctgga
attaaaaaagctccaaaaaagcgcattgcagcaatgctggagccactagatgaaggtgta
gctgaagaaaatgatgaaacactggctgaagatgaagagaattcatcagagacagaagac
atagcagatgttgggaaaaaattgcagtcggatcttcagagtctcagttcgagagggatc
caagtaaacatggacttgaagggtgccgggagttcaggtggcaagaagccgtctgcaggg
agaggaagaggaagaggaagttctaatagcagtgcaagcgctgaatcctcaggtaagaga
ggtggccggggttctggagctgctgccaagagaaagaggtga

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