Stenotrophomonas oahuensis: PDM29_11460
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Entry
PDM29_11460 CDS
T10110
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sou Stenotrophomonas oahuensis
Pathway
sou03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sou00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PDM29_11460 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sou03021
]
PDM29_11460 (rpoB)
03400 DNA repair and recombination proteins [BR:
sou03400
]
PDM29_11460 (rpoB)
Enzymes [BR:
sou01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PDM29_11460 (rpoB)
Transcription machinery [BR:
sou03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PDM29_11460 (rpoB)
DNA repair and recombination proteins [BR:
sou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PDM29_11460 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
WNH51000
UniProt:
A0ABY9YK14
LinkDB
All DBs
Position
2605690..2609844
Genome browser
AA seq
1384 aa
AA seq
DB search
MTSYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQENIDPAKRRDLGLHAALKS
VFPIASYSGNAALEYVGYKLGEPVFDERECRQRGMSYGAPLRVTVRLVIYDRESSTKAIK
YVKEQEVYLGEIPLMTDNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR
IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEMLAQFFEINTFHINPD
EGVQLELVAERLRGETLNFDLADGDKVIVEAGKRITARHVKQLEASGIAALAVPDDYIVG
RILSHDVVDAATGELLAQANDEITDEQLQAFRKAGVDAVGTLWVNDLDRGPYLSNTLRID
PTKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRKEV
TGEAVLYDSKYFGERNDEESKRLVAEHGDSSDILDVIKVLTEIRNGRGVVDDIDHLGNRR
VRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLS
QFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLI
NSLAVYARTNQYGFLETPYRKVVDGKVLDDIEFLSAIEENEYVIAQANALTDAKSVLTEQ
FVPCRFQGESLLKPPAEVHFMDVSPMQTVSIAAALVPFLEHDDANRALMGANMQRQAVPT
LRAQKPLVGTGIERAVARDSGVTVNARRGGEIVQIDAGRIVVKVNEDEITDASDAGVDIY
NLIKYTRSNQNTCINQRPLVEVGNVVARGDVLADGPSTDIGELALGQNMLIAFMPWNGYN
FEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVV
YIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDV
QVFTRDGIEKDKRARQIEENEIKRVKKDFDDQFRILEAAIYARLRSQIVGKVVNGGVNLK
KGDTISDAYLDGLKKADWFALRMKDEDASEAIERAQKQIQAHEKEFERRFADKRGKITAG
DDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMASGETVDIVLN
PLGVPSRMNIGQILEVHLGWAAKGLGRKIQRMLEAQSALNDLRKFLDDIYNHDKTQHANQ
VDLSQFSDEELLRLAQNLTDGVPMATPVFDGATEAEIKRMLELADLPSSGQTQLYDGRTG
EAFDRHTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAINME
LEDN
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcctattcgttcaccgaaaagaagcgtatccgcaaggacttcggcaagcagcgc
tcgattctcgaagtgccgttcctgctggccatccaggtggattcctaccgcgagttcctg
caggaaaacatcgatccggccaagcgccgtgatctgggcctgcacgccgccctcaagtcg
gtcttcccgatcgccagctacagcggcaacgccgcgctggaatacgtcggctacaagctg
ggcgaaccggtctttgacgaacgcgaatgccgccagcgtggcatgagctacggcgcgccg
ctgcgcgtgaccgtgcgcctggtcatctacgaccgtgagtcgtcgaccaaggccatcaag
tacgtgaaggagcaggaggtctatctgggcgaaatcccgctgatgaccgacaacggcacc
ttcatcgtcaacggcaccgagcgcgtcatcgtctcgcagctgcaccgctcgccgggcgtg
ttcttcgaccacgaccgtggcaagacccacagctcgggcaagctgctgtacagcgcccgc
atcattccttaccgcggctcctggctggacttcgagttcgacccgaaggacgccctgttc
acccgtatcgaccgtcgccgcaagctgccggtgtcgatcctgctgcgcgccctgggctac
agcaacgaagaaatgctcgcgcagttcttcgagatcaacaccttccacatcaatccggac
gaaggcgtgcagctggagctggtcgccgagcgtctgcgcggtgagaccctgaacttcgac
ctcgccgatggcgacaaggtcatcgttgaggccggcaagcgcatcaccgcgcgtcacgtc
aagcagctggaagcctcgggcattgccgccctggccgtgccggacgactacatcgtcggc
cgcatcctgtcgcacgacgtggtcgacgccgccaccggcgaactgctggcccaggccaac
gacgaaatcaccgacgagcagctgcaggccttccgcaaggccggcgtggatgccgtgggc
accctgtgggtgaacgatctggatcgtggtccgtacctgtccaacaccctgcgcatcgat
ccgaccaagacccagctcgaagcgctggtcgaaatctatcgcatgatgcgtccgggcgag
ccgccgaccaaggacgccgcgcagaacctgttccacaacctgttcttcaccttcgagcgc
tacgacctgtccacggtcggccgcatgaagttcaaccgtcgcgtcggccgcaaggaagtc
accggcgaagccgtgctgtatgacagcaagtacttcggcgagcgcaacgacgaagaatcc
aagcgcctggtcgccgagcacggcgacagctccgacatcctggacgtgatcaaggtcctg
accgagatccgcaacggtcgcggcgtggtcgatgacatcgatcacctgggcaaccgtcgc
gtgcgttcggtcggcgaaatggccgagaacgtgttccgcgtcggcctggtccgcgtcgag
cgcgcggtcaaagagcgcctgtcgatggccgagtcggaaggcctgaccccgcaggagctg
atcaacgccaagccggttgctgctgcgatcaaggaattcttcggttcctcgcagctgtcg
cagttcatggaccagaacaacccgctgtcggaagtcacgcacaagcgtcgcgtctcggcc
ctgggcccgggcggcctgacccgcgagcgcgccggcttcgaagtgcgcgacgtgcacccg
acccattacggccgcgtctgcaccatcgaaacgcccgaaggcccgaacatcggcctgatc
aactcgctggccgtgtacgcccgcaccaaccagtacggtttccttgaaaccccgtaccgc
aaggtcgtggacggcaaggtcctggacgatatcgagttcctttcggcgatcgaagagaac
gagtacgtcatcgcccaggccaatgccctgaccgatgccaagagcgtgctcaccgagcag
ttcgtgccgtgccgcttccagggcgaatcgctgctgaagccgccggcggaagtccacttc
atggacgtctcgccgatgcagaccgtctccatcgcagcggcgctggtgccgttcctggag
cacgatgacgcaaaccgtgcactgatgggcgcgaacatgcagcgtcaggccgttccgacc
ctgcgcgctcagaagccgctggtgggtaccggtattgaacgcgccgtggcacgtgactcc
ggtgtgaccgtcaatgcccgtcgtggtggcgagatcgtgcagatcgacgctggccgcatc
gtggtcaaggtcaacgaggacgagatcaccgacgccagcgatgccggcgtggatatctac
aacctgatcaagtacacccgctccaaccagaacacctgcatcaaccagcgtccgctggtg
gaagtgggcaacgtggtggcgcgtggcgacgtgctggctgacggtccgtccaccgacatc
ggcgaactggctctgggccagaacatgctgatcgccttcatgccgtggaacggctacaac
ttcgaagactccatcctgctctccgagcgcgtggtggaagaggatcgttacaccacgatc
cacatcgaagagctgacctgcgtcgcgcgtgacaccaagctggggccggaagaaatctcc
gccgacatcccgaacgtgtccgagcaggcgctgaaccgcctggacgaatccggcgtggtg
tacatcggtgccgaagtgcgcgccggcgacatcatggtcggcaaggtcacgccgaagggc
gaaagccagctgaccccggaagagaagctgctgcgcgcgatcttcggcgagaaggcctct
gacgtgaaggacagctcgctgcgcgtgccgccgggcatggacggcaccgtcatcgacgtg
caggtcttcacccgtgatggcatcgagaaggacaagcgtgcgcgccagatcgaggaaaac
gagatcaagcgcgtcaagaaggacttcgacgaccagttccgcatcctcgaagcagccatc
tacgcccgtctgcgttcgcagatcgtcggcaaggtggtcaacggtggcgtcaacctgaag
aagggcgacaccatctccgacgcctacctggacggcctgaagaaggctgactggttcgcg
ctgcgcatgaaggacgaggacgcctcggaagccatcgaacgcgcccagaagcagatccag
gcgcacgagaaggaattcgagcgtcgcttcgccgacaagcgcggcaagatcaccgcgggc
gacgacctggctccgggcgtgctgaagatggtcaaggtgttcctggccgtgaagcgtcgc
atccagccgggtgacaagatggcaggccgccacggcaacaagggtgtggtgtccaacgtg
gtgccggtcgaggacatgccgtacatggcctcgggcgaaaccgtggacatcgtgctgaac
ccgctgggcgtgccgtcgcgtatgaacatcggccagattctggaagtgcacctgggctgg
gcagccaagggcctgggtcgcaagatccagcgcatgctggaagcccagtcggcactgaac
gacctgcgcaagttcctcgacgacatctataaccacgacaagacccagcatgccaaccag
gtggatctgtcgcagttcagcgatgaagagctgctgcgtctggcccagaacctgaccgac
ggcgtgccgatggccaccccggtgttcgacggtgccaccgaagcggaaatcaagcgcatg
ctggaactggccgacctgccgagcagcggtcagacccagctgtacgacggccgcaccggt
gaagccttcgaccgccacaccacggtcggctacatgcactacctgaagctgaaccacctg
gtcgacgacaagatgcacgcccgttcgaccggtccgtactcgctcgtcacccagcagccg
ctgggcggcaaggcgcagttcggtggccagcgcttcggtgaaatggaagtctgggcgctg
gaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaagtccgatgacgtg
cagggccgcaaccagatgtacaagaacatcgtcgacggtgagcacgagatggtcgcgggc
atgccggaatccttcaacgtgctcgtgaaggaaatccgctcgctggccatcaacatggaa
ctggaagacaactga
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integrated database retrieval system
