Sporomusa ovata: SOV_03930
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Entry
SOV_03930 CDS
T10406
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sova Sporomusa ovata
Pathway
sova03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sova00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SOV_03930 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sova03021
]
SOV_03930 (rpoB)
03400 DNA repair and recombination proteins [BR:
sova03400
]
SOV_03930 (rpoB)
Enzymes [BR:
sova01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SOV_03930 (rpoB)
Transcription machinery [BR:
sova03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SOV_03930 (rpoB)
DNA repair and recombination proteins [BR:
sova03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SOV_03930 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF5887
Motif
Other DBs
NCBI-ProteinID:
WWV69152
LinkDB
All DBs
Position
404864..408664
Genome browser
AA seq
1266 aa
AA seq
DB search
MFNPVPVGKRFRYSYAKIKEVLDMPNLIEIQKNSYRWFLKEGLQEIFHDISPIQDFTGNL
ILSFENFTLGEPKYDVEECKERDVTYAAPLRVSVRLYNKETQEIKEQEVFMGDFPLMTDN
GTFIINGAERVIVSQLVRSPGVYYGESIDATGKKLYNATVIPNRGAWLELETDANDVISV
RVDRTRKLPVTVLIRSLGYVSNGVISELFNEDVRIRATLERDNTDSREEALVEIYKRLRP
GEPPTVDNAAQLLETLFFDPKRYDLATVGRYKLGKKLGWRRRLLGKVLAQPLVDKETGEI
VVDENTQVDEDVLNKIAAANIFDDVGLKEAWIKQKDGTSVKLLLNTVLPFTHRTITKEDI
IASISYLLNLTEGHGTTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVKERMTIQDID
VITPQALINIRPVVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGF
EVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTFGRINEFGFIETPYRKVNKQEHRVTEEV
YYLTADEEDEMIVAQANDVLDENGWFVEPRVTCRYRNEILVVPAEKVDYMDVSPKQVVSI
ATAMIPFLENDDANRALMGANMQRQAVPLLRTQAPLVGTGMEYKAARDSGVVILAKNAGV
VEKVTATEIHIRTEKGALDTYKLLKYLRSNQGTCINQKPIVYKNDTIVKGQVLADGPATD
NGELALGFNVLVAFMPWEGYNYEDAILLSQDLTKADVFTSIHIEEYECDARDTKLGPEEI
TRDIPNVAEDVLRDLDDRGIIRVGAEVRPGDILVGKVTPKGETELTAEERLLRAIFGEKA
REVRDTSLRVPHGEAGKIVDVKVFTRENGDELPPGVNQLVRCYIAQKRKISEGDKMAGRH
GNKGVVSRIMPKEDMPFLPDGTPVQIVLNPLGVPSRMNIGQVLETHLGRAAAAIGMQIKL
GDPTVADRLKAVNYDFDKHGMPKPDKAGIHLAVPVFDGATETDVINTLKAAGLSEDGKTE
LFDGRTGEPFDNHVTVGYVYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFG
EMEVWALEAYGSAYTLQELLTVKSDDVVGRVKTYEAIVKGENIPEPGVPESFKVLIKELQ
SIGLDIKILTEDDQEIMIRDTDEDINETAKELELNIGDDMPKASLERKKTDFEADMVDEL
EANDDIEPLEEELDIIAEIGEMEPDAAQRSHEDEFDLQSSASNAAKLKENAKKSTSHEDL
EEVLED
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatcctgttccggtgggcaaaagattcaggtatagttatgccaaaattaaagaa
gtgctggacatgcccaaccttattgaaattcaaaagaattcgtatcgttggtttcttaag
gaaggtttacaagagatatttcatgatatctctccaatccaggactttaccggcaacctg
attctatcgtttgaaaattttacactgggcgaacctaagtatgatgttgaggaatgtaaa
gagcgggatgttacctatgccgctccacttcgtgttagtgttcggctatacaacaaagaa
acacaggaaataaaagagcaagaagtatttatgggcgattttccgctcatgaccgacaac
ggtacatttatcattaatggtgctgaacgggttattgtcagccaattagtgcgttcaccc
ggcgtatattatggtgagagcattgatgctacaggtaagaaactgtataatgcgacggta
attcctaatcgtggcgcctggctggaacttgagactgacgccaatgatgttatatctgtt
cgtgtcgatcgcacccgtaagttaccagtaactgtcctgatccgttcattaggctatgta
tctaatggcgtaatttctgaactctttaatgaggatgttcgcattcgggcgacactggaa
cgagacaacacagattcacgggaagaggctcttgttgaaatctacaagcgattgcgtccc
ggtgaaccgccaacggtagacaatgctgcacaattgctggaaacgttattttttgatccc
aagcgctatgacttggctactgtagggcgctataaacttggcaaaaagttagggtggcgt
cgccgtctgttaggaaaagttcttgctcagccgttggtggataaagaaactggcgaaatt
gtagtagatgaaaatacacaagtagatgaggacgttcttaataagatcgctgctgctaac
atttttgacgatgtgggtctgaaggaagcctggattaaacaaaaagatggtacatcggta
aaattgctgcttaatacagtattgccatttacgcatcgtaccattacgaaagaagatatt
attgcttccatcagctatcttcttaacttaacagaaggtcatggaactactgatgacatt
gaccatttaggtaatcgccgactgcgctcggtaggcgaacttttgcaaaaccagttccgt
attggtttgtcccggatggaacgggtagttaaagaacgtatgactattcaggatattgat
gtaattacgccgcaggcgctcataaatatccggccagtggttgctgccataaaagaattt
tttggctccagtcaattatctcagtttatggatcaaaccaacccgctggctgaacttact
cataaacgacgtctcagcgcccttggccctggtggccttagccgggaacgtgctggtttt
gaggttcgtgacgtccaccattcccactatggtcggatgtgcccgattgagacacctgaa
ggtccgaacatcggccttatcggttcgctttccacttttggacgaattaatgaattcggt
tttattgagacaccataccgtaaagtcaacaaacaagagcatcgggtaacagaagaagta
tactatttgacggctgacgaagaagatgaaatgattgttgcccaggctaatgatgtttta
gacgaaaatggctggtttgtggagccgcgtgttacctgtcgctacagaaatgaaatattg
gtagttccagctgaaaaagttgactatatggacgtatcgcctaaacaagtagtatctatt
gctactgccatgatacctttcctggaaaacgatgatgctaacagagcattgatgggggca
aatatgcagcggcaggccgtaccgcttcttagaacgcaggcaccacttgttggtactggc
atggaatataaagccgcccgtgattccggggttgtaattttggcaaaaaatgcgggcgtt
gttgaaaaagtaacagccacagaaatccatattcgtaccgaaaagggagcgcttgatacc
tataagttacttaaatacctgcgttccaaccaaggaacatgcataaatcaaaaacccatc
gtatataagaacgatactatcgttaaagggcaagtgcttgctgatggaccggccaccgat
aacggcgaactggccttaggctttaatgtgctggtagcctttatgccttgggaaggctac
aattacgaagatgctattctcctaagccaggacttaacaaaagccgatgtatttacctct
atacatattgaagaatatgaatgtgatgcccgtgatactaagcttggtcctgaagaaatt
acccgtgacattccaaacgttgccgaagacgtactgcgtgatcttgatgaccgcggcata
atccgtgttggcgcagaagtgcgtcctggggatattctggttggtaaagtaacaccaaaa
ggcgaaacggaactgactgccgaagaacgattattacgggccatttttggtgagaaagcc
cgcgaggttcgtgatacctcacttagagtaccgcatggcgaagcaggtaagattgttgat
gtaaaggtctttacccgtgaaaatggcgacgaattgccaccaggtgtaaaccagctggta
cgttgctatattgcccaaaaacgtaaaatctctgaaggtgacaaaatggccggtcgtcac
ggcaacaaaggtgtcgtttcccggataatgccgaaggaggatatgcctttcctgcctgat
ggcacacctgttcaaatcgtattaaacccactaggcgtaccatcgcgtatgaatattggt
caggtacttgaaactcacttaggtcgtgctgctgctgctattggcatgcagattaagctg
ggcgatccgaccgtagctgacaggctgaaagcggtcaactatgatttcgacaaacatgga
atgcctaagccggataaggcaggtattcatttggctgtaccagtatttgatggcgccact
gagactgacgttattaacacattaaaagcagcaggtttatcagaagatggcaaaaccgaa
ctgtttgacggcagaacaggtgaaccatttgataatcatgttactgttggttacgtgtat
atgctcaaactgcatcacttggttgatgataaaattcatgcccgttcgactggtccgtac
tcgcttgtaacgcaacagccgcttggtggtaaagcacagtttggcggtcagcgcttcggt
gagatggaagtgtgggcattggaagcatatggatccgcctatactctgcaagaattacta
actgtcaagtctgacgatgttgttggtcgtgtaaaaacctatgaggccattgtaaaaggc
gaaaatatacctgaaccaggtgtgcctgaatccttcaaggtactgatcaaagaactccag
agtatcggtcttgatattaagatactgacagaagatgaccaagaaattatgattcgtgac
acagacgaagacatcaatgaaacagctaaagaattagaattgaatattggcgatgacatg
ccgaaagcctcacttgaacgcaaaaagacggattttgaggcggatatggttgacgaacta
gaagcaaatgatgacatcgaaccgctggaagaagaacttgatattattgctgagattggt
gaaatggagcctgatgcggctcaaagatcccatgaagatgaatttgatttgcagtcctct
gcaagcaatgctgcgaagctcaaggaaaatgctaaaaagtctacttcccatgaagatttg
gaagaagtcctagaagactag
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integrated database retrieval system
