Candidatus Nanosynbacter lyticus: TM7x_02075
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Entry
TM7x_02075 CDS
T03502
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sox
Candidatus Nanosynbacter lyticus
Pathway
sox03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sox00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TM7x_02075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sox03021
]
TM7x_02075
03400 DNA repair and recombination proteins [BR:
sox03400
]
TM7x_02075
Enzymes [BR:
sox01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TM7x_02075
Transcription machinery [BR:
sox03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TM7x_02075
DNA repair and recombination proteins [BR:
sox03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TM7x_02075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AJA06494
UniProt:
A0A6S4GSV8
LinkDB
All DBs
Position
complement(384083..387427)
Genome browser
AA seq
1114 aa
AA seq
DB search
MAKKPSTSSERVYFTSGDNALPLPNLIAHQKDSWRWFVEEGLSEIFSEVNPIDDYTGQKL
SLKFGKYYFGEPKNTDQFAKENNLTFEAPLHATVELTNKTTGLVEEQEIYLGEYPWMTDR
GTFVINGTERVVVSQLIRSAGVFFTAETVAGRNYYGAKIIPGRGAWMEFETASNGTIYVK
IDRRRKIPATTLLRALGYPKTSEIKELFADIDTGDVKYIEETLDKDTARGANEALIEVYR
RLRPGDLATVDNARQMIERMFFDFKRFDYSRVGRYKINQRLGLDVANTTENRTLQMSDLV
AILREVIRLNNTQEPADDIDALNNRRVRLVGELIARQFRVGMLRMQRNAMDRMSVADMES
VSPSQLINARPIVAAVREFFTSSQLSQLLDEVNPLSELSHKRRLSSTGPGGLSRERAGFE
VRDAHPTHYGRICSVETPEGANVGLVLNLAAYARVNEYGFIETPYLRVKDGRVTDELVYL
DASQEIGEVIADAGEVLNEDGTFRDERVNARNNMQPSQVDASQVTFMDAAHRQILGSTAA
LVPFIEKTRVDRALTGSNMQRQAVPLLTPESATVGTGIEKAVAENSGHLIQAEANGEVVR
ADADEIHVKYADGVKIYTLKHFVKNNDDRCYNQKVRVERGDKVKKGDILIEGASIAGGEI
ALGKNLLVAFMPWGGYNMEDAIIMSRRLVEDDRLTSINIKDYTVEVRETKLGPEIVTRDI
PNVSEESLRHLDENGIVQIGSEVKAGDVLVGKITPKGEQELSSEERLLRAIFGEKAKDVR
DTSQRMNNAGGGKVVGVKIFSRENGHELKAGVLMQIQIFVAQLRKIGVGDKMAGRFGNKG
VVAKVLPVEDMPFLEDGTPVDVILNPLGVPSRMNLGQLFETHLGMAARALGYRVATPSFN
GVPSEKISDELEKAGLARDGKSQLFDGRTGEAFEERTTVGVMHMIKLHHMVSDKIHARST
GPYTMVTQQPLGGKAQNGGQRFGEMEVWALEAYGAAATLQEMLTIKSDDVYGRAKAYESI
IKDEPIVGPKLPESFNVLVKELQGLGLRVDLVDDEATVDAEHVIASSGPEDKTVATDDEE
EKEVYLDESDDIGEIDSGMSVQDIDEVEEIKEDA
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaaaaccatccacaagcagcgagcgcgtctatttcacctctggtgacaacgcc
ctgccgctgccaaacctaatcgctcaccaaaaagattcttggcgctggttcgtcgaagaa
ggtttgagcgagatattttcagaagttaatccaattgacgactatactggtcaaaagttg
tcattgaaattcggcaaatattattttggcgagccaaaaaacactgaccagtttgctaaa
gaaaataacttgacatttgaagcgccgctgcacgcgacggttgaattgactaacaagaca
actggtctggttgaggagcaagaaatttacctcggtgaatatccatggatgaccgatcgt
ggtacgtttgttattaacggtactgagcgtgtagttgttagccagctgattcgttcggcg
ggtgtattcttcacagctgaaactgtggctggtcgtaactattacggcgcaaagattatt
ccaggccgtggtgcgtggatggagtttgagacggcttctaacggtacgatttacgtgaag
attgatcgccgccgcaagattccagcaacgacattgctacgtgctttgggctatccaaag
actagtgaaattaaggaattgtttgctgatatcgacacaggcgacgtgaaatatatcgag
gaaaccctagacaaggacacagcgcgtggtgcaaatgaggctttgattgaggtttatcgt
cgtttgcgtccaggtgatttggcgacggttgacaatgctcgccagatgattgaacgcatg
ttctttgacttcaagcgatttgattactcccgcgttggtcgttataagatcaatcagcgt
ttgggtcttgatgttgctaatacgactgaaaatcgtacgttgcagatgagcgacttggtg
gcgattttgcgtgaagtgattcgccttaacaacactcaggagccagctgatgacattgat
gcgttgaataatcgccgtgttcgtttggttggcgagctgattgcccgtcagttccgcgtt
ggtatgctcaggatgcagcgcaacgccatggaccgcatgagcgtggctgatatggaaagt
gttagcccaagtcagctaatcaatgctcgtccaattgtagcggcagtgcgtgagttcttt
acttcaagccagttgtcgcagttacttgacgaggttaacccattgtcagaattgagccat
aagcgacgcttgagttcgactggccctggcggtttgagccgtgagcgtgctggatttgaa
gttcgtgatgctcacccaacacattacggccgtatctgttcagtggagacaccagaaggt
gctaacgttggtttggtgctgaacttggcagcttatgctcgagttaatgaatatggtttt
attgagactccatatctacgcgtcaaagacggtcgcgtgaccgatgagcttgtttatctg
gacgcttcacaggaaatcggtgaagttatcgctgacgctggtgaagttctgaatgaagat
ggtactttccgcgatgagcgcgttaatgctcgtaacaatatgcagccatcacaggttgac
gctagccaagttactttcatggacgcagctcaccgtcagattctgggctcaaccgcagcg
ttggttccgttcattgagaagactcgtgttgaccgcgccttgactggctcaaacatgcaa
cgtcaggctgtgccacttcttactccggagtcagcaactgttggtactggaattgagaag
gctgtggctgaaaatagtggtcacttaatccaggctgaggcaaacggtgaagttgttcgt
gctgatgcggacgagattcatgttaaatatgctgacggtgtaaagatttacaccctgaag
cactttgtgaagaataatgacgatcgttgttacaaccaaaaagttcgcgttgagcgcggt
gataaggtgaagaagggcgatattctgattgaaggcgcctcaattgctggtggtgaaatt
gccctaggtaagaatctattagtagccttcatgccatggggtggctacaacatggaagac
gcgattatcatgagtcgtcgtttggttgaagatgatcgattgaccagtatcaatattaag
gattacaccgttgaggtccgtgagacgaagcttggtccggagattgtgacgcgcgatatt
ccaaacgtttctgaggaaagtctgcgccacttggatgagaatggaattgtccaaattggt
tctgaggttaaggcgggcgatgttttggttggtaaaattacaccaaagggtgaacaagaa
ctgagttctgaggaacgcctgctccgcgctattttcggtgaaaaggctaaggatgtccgt
gatacctcacagcgcatgaacaatgctggcggtggtaaagttgttggtgtgaagattttt
agccgtgaaaatggccatgaattgaaggcaggcgtcttgatgcagatccagatttttgtg
gcacaactgcgaaagattggtgttggtgataagatggctggacgctttggcaacaagggc
gttgtagcgaaagttctgccagttgaggatatgccgttcctagaagatggtacgccagtt
gacgtaatcttgaacccacttggtgtgccaagccgcatgaaccttggtcagctgtttgag
acgcacctcggtatggcggcgcgagcattgggctaccgcgtagcaaccccgtcgtttaat
ggtgtgccaagtgagaaaatttctgatgaactagaaaaagcaggactagcacgtgacggt
aaatcgcaactattcgatggccgtactggtgaagcgtttgaagagcgtaccacagtcggt
gtgatgcatatgattaagttgcaccacatggtttctgacaaaattcacgctcgctcaact
ggtccatacaccatggtgactcagcagccgctcggtggtaaggcgcaaaacggtggtcag
cgcttcggcgagatggaggtctgggcactagaagcctacggtgccgctgcaaccttgcag
gaaatgttgacaattaagtccgacgacgtttacggtcgtgctaaggcttacgagtcaatc
attaaggacgagccgattgtcggtccaaaactgccagaatccttcaacgtgttggttaag
gagcttcaaggcttgggccttcgggttgacttggttgatgacgaagcaacagttgacgct
gagcatgtcatcgcttcaagcggcccagaggataagaccgtagctactgacgatgaagaa
gagaaagaagtatacttggacgaatcagacgacatcggtgaaattgacagcggtatgagt
gtacaagatattgatgaagtagaagaaataaaggaggacgcgtaa
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