Sitophilus oryzae (rice weevil): 115882251
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Entry
115882251 CDS
T07985
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
soy
Sitophilus oryzae (rice weevil)
Pathway
soy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115882251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soy03019
]
115882251
Messenger RNA biogenesis [BR:
soy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115882251
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115882251
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
115882251
NCBI-ProteinID:
XP_030756047
UniProt:
A0A6J2XX47
LinkDB
All DBs
Position
Unknown
AA seq
2369 aa
AA seq
DB search
MNLDSLSFTLSQISYLIATLTKKNYKLVVAELLEVVTLHGLEADRHLVQCLFSSVNFSNQ
TVKVATPHIQLLLDQCARLLNTPSLLTAVCYLTDRPLVNEKNLKVGPQFFSQLSKHLRLS
AVQEVLFALALRHSSISEVSNLAQSHLRVTVPLLVQSYIDTEGSSRQHEGGLHETSPEVL
HFILSAILESPKEVGLTNEKHTTFLHTLQKDFSKEQVPVVLAPLVYPEQFELAPEMSSEG
PGLAGGILDTSLADLIKEVGYGFTSSLEECRNTILKLGGRDIAPSTIARVLAVMCRTHTG
LDESLGTFNKTADVRTSWNTEIFVQALKEVSPSLQWNNVVAELDHPEFVIKDRQGLCILI
SALRQGFQSLGFHPETFPVDHFYKRWANLEGQFSLIQQILKNSDVFCFVDYPCVSVAIDV
LKTPPEQDSKELANWRSLNLIELLLNVSEFGLYTHVQELFKVPVHSCPDVLVLALLQISG
PVTLLRQELLTNLIPIFLGNHPNSGIILHHAWHTQNINIKPVIMHAMAEWYVRGECDQTR
LSRILDVAQDLKALSMLLNAQSAQSYPFIIDLACLASRREYLKLEKWLSDKINEHGEGFI
TACVKFLHRRCPQIGKEDLNLINKSGQLPADTLTTMMVCLQRCMNNVSPECQEAIIAVIN
SCSMLLKTRQQNPNALVRSRGIDTTLNPSVFAGQLYNHAGVDQIQSLGTNLTNLNLAGPT
NNTFNLQGGLGPLVQSPASPSRLLSGPSNSPFPLLPMQHQGPVGTSSSLVLGVNQIGNLG
RLGPTANIDKTRIQDYNLFPEGSPHVSKEIEDEANNYFQRIYNHPPNPYLSIDEVLSMLK
RFQDSHNKREKEVFNCMLKSLFEEYKFFPQYPDKELQITAQLFGGIIERGIVTSYVTLGL
ALRFVLEALKKPEGSKMYYFGIAALDKFKTRLKEYHKYCEHVRQIPHFSDFPQHLQEYVE
YGLQGMEPPSKPEGSVLPASLAAMLAPPNVSVSQVYKTNTTVSSTASSKTSTTPASTLGS
RPSIANATNIDTLLVATEKEEKAIAPPESLQDKTAFIFNNLSQLNLKTKCDELRDLVSDE
YYPWLSQYLVMKRASIEFNFHGLYSNFLDTLAIIDIYKMVVKETFRNIRVLLRSDKAIAN
FSDRSLLKNLGHWLGMLTLARNKPILQIELDLKSLLVEAYHKGQQELLYVVPFVAKVLES
CSKSKVFKPPNPWTMALMNVLAELHSEPDLKLTLKFEIEVLCKNLEIDVAQLKPAVFLKD
PERIRKIEYQLSQPAKKEPILSSSQGNQSSSLAEPELANIIAGQSTSSPVLVMQNISTTP
TSSMGAPPEPRFSYSDIQMTGMQALQNYIVISPNILLFQSHSQLKGLVRTAVERAVQEWI
APVVDRAIKISLPACENIIRKDFALEPDEERMRLAAHYMVRNFTAGMVMITCRDQLLTAI
NTHLKQALNAQMVTPGVQQKDMIEQAASIVASENMELACVFVQKTAVEKAIPEIDKRLMS
EYELRRIARKEGRCYCDTIALAYQGDHMPEPIRLKVGSLTGSQMAVYEEFARNIPGFLPS
ERDAALLMQKSSMAPQMEPQSHPATSFAVGQSVLANDEVSMLFEKLTADVDQFIQLTSTQ
AQYSHMYQNMLVIRDCVFHFLRTRDVNPPQAIVHKCVESLQDCLVPTLSDNDPVVLRFKE
VIIRILKAIQGIASQQWTNKLVTRYLTECREEQQRYNIDAVDTLIKSGLVNVPQYDMALA
QCLENGLNYMGVSFAMQLVELCLINDRSGQFVTESDLCNTVEVLAKIQTQTRQPPEGLGN
IIDIIRQNPDTAFFGDRAPMGPTVHIHNGILQVRAPNYEDPPGLVEKTDFLLREWINIYN
SQHQGRDSTKAFSIFVHQMNVHGILKTDDLITRFFRLSTQLCVETVYRALLDKSNTNMST
RPKCYHTLDAFVRLVSLLVKHSGDANNTTTKVHLLNKVLGIVAGCLLQDHDTRTVEFQQM
PYQRIFTMLFLELNAPEPILEAINFHVLTAYCHTFHILRPSKAAGFCYAWLELISHRVFI
GRMLATTPQQKCWPLFAQLLVDLFRYLAPFLRNAELAKPVTMLYRGTLRVLLVLLHDFPE
FLCDYYYGFCDVIPPNCIQMRNLILSAFPRTMRLPDPFIPNLKVDMLPEISYAPRINTNI
SLTISPAQFKKDLDSYLKARAPVTFLSELRSNLQISNEPGVRYNISLMNALVLYVGTQAI
AYIRNKGLTPSMSTIAHSAHMDIFQNLTVDLDTEGRYLFFNAMANQLRYPNSHTHYFSCT
FLYLFAEANTEVIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPTYKFWQHQFVHCAP
EIEKLFESVARSCFVKTSVQMQQETEVPE
NT seq
7110 nt
NT seq
+upstream
nt +downstream
nt
atgaaccttgattcattgtcttttactttgtctcaaataagttatttaatcgctacttta
acgaaaaagaactacaagctggttgtagcagaactcctagaggtagtcactttacatggt
cttgaggcagaccgtcacttggtccagtgtctgttctcgtcagtgaatttctctaatcag
acagtcaaagttgctacacctcacatccaattattattggaccagtgtgctcggttactg
aatacaccatccttactcacagcagtttgttaccttactgatagacctttggtaaatgaa
aagaatctgaaggttggcccccagtttttttcccaattgagcaagcacttgcgcctttct
gctgttcaggaggtgttatttgctttagctcttcgtcattcttcaatatcagaagtttca
aatctagcccagagccatttgagggttaccgtacctctattagtgcagtcctatattgac
acagaaggcagcagccgtcagcacgaaggcggtcttcacgaaaccagccccgaagtgcta
cacttcatcttgtccgccatcttggagtctcccaaagaagtgggcctgacgaacgaaaaa
cacacgacctttttgcacacgctacaaaaagacttttcgaaggaacaggtgcccgtggta
ttggcgcccttagtttaccctgaacagttcgaactagctcccgagatgtcgtccgagggt
ccgggactagccggaggtatcctggatacgtctctggcggatctcattaaagaggtgggc
tacggattcacctcgtcactggaggaatgcaggaataccattttgaagttgggaggacgc
gacattgcgccctctacaattgctcgcgttctggcagtcatgtgccgaactcataccgga
ttagacgagtctctaggaacattcaacaagacagcagatgttaggacctcgtggaacaca
gaaatatttgtacaggctttaaaggaagtttcaccttcactccagtggaacaacgtggtg
gcggaattggaccatccagaattcgtaatcaaagacagacagggactgtgcatattgatt
agcgctctacgccagggatttcagtctctaggatttcatccggaaacctttccagtcgat
cacttttacaagagatgggctaatctggagggacagttcagtttgatccaacagattctg
aagaactccgacgtattctgttttgtcgattatccctgcgtgtccgtggcaattgacgtg
ttgaagacgccaccggaacaagacagcaaggaattggccaactggagatctttaaatttg
attgagctgcttttaaacgtgtcggagtttggcctgtacactcacgttcaggaattattt
aaagtgcctgttcacagctgtcccgatgttttggtgttggctctactgcaaatatcgggg
ccagttactctactcagacaagaactgttgacaaatttgattccgatatttctggggaat
catcccaattccggtataatacttcaccacgcttggcacacgcaaaacatcaatatcaag
ccggttattatgcacgccatggcggaatggtatgtcagaggagaatgcgatcaaacccgg
ctatctcgaatattggatgtggcccaagacctgaaagcgctctccatgctgctgaacgcc
caatctgctcagtcatacccgttcataatagacctggcttgtctggcttcgagacgggag
tacctcaaactggaaaagtggttgtcggacaagatcaacgaacatggtgaaggctttatt
acggcctgcgtcaagttccttcacagaagatgcccccaaattggaaaagaggacttaaat
ttaataaataaatcgggtcaactgcccgctgacactctaaccacaatgatggtgtgtctg
cagaggtgtatgaataacgtgagtcctgagtgccaggaagccatcatagccgtgatcaac
agttgttcgatgttgctgaagacgaggcagcagaacccgaacgcgctcgtacgcagccgg
ggcatagacaccacccttaacccgtcagtctttgccggacaactctacaatcacgccgga
gtggaccagattcaaagtttaggaacgaacttgaccaatttaaatctggccggcccaaca
aacaatactttcaacttacaagggggtttgggtccgctggtgcagtcgcccgcgtcccct
tcgcggctcctcagcggcccctcaaacagtccattcccccttttgccgatgcagcatcag
ggacccgtgggcaccagttcatcgttggtgctgggagtgaaccaaataggaaatttggga
aggctgggccccaccgccaacatagacaaaacccgtatccaggactacaacctgtttccc
gagggatcgccgcacgtgtccaaggagatcgaggatgaggccaacaattactttcagaga
atctataatcatcccccgaatccatatttatcgatcgacgaagttctcagtatgcttaaa
cgctttcaggattcacacaacaagagagagaaagaggtttttaattgcatgctgaaaagc
ctctttgaagaatataaatttttcccgcaatatcctgacaaggagctccagataacggct
cagcttttcgggggcatcatagaaaggggtatcgtaacttcgtatgtgacgttaggtttg
gcactaagattcgtcttggaagccttaaagaaacccgaaggatccaaaatgtactatttt
ggaatagctgcgttggataaatttaaaacccgtttgaaagaatatcacaaatattgcgaa
catgtgagacaaatcccgcattttagcgattttcctcaacacttacaagagtacgtcgaa
tatggattgcaaggcatggaacccccgtccaaacccgaaggctcggtccttcccgccagt
ttggccgctatgttagctccgcccaacgtctctgtttcgcaagtttacaagactaacact
acagtgagcagcaccgcgtctagtaagacgagtaccacccccgccagtacccttggcagt
cgaccttccatcgccaacgccaccaacatcgacactctgctagtggccaccgagaaagag
gaaaaggctatcgctccacccgagtctttacaggacaagaccgccttcattttcaataat
ctgagtcagctaaatctgaaaacgaaatgcgacgaactcagagacctcgtctcggacgag
tactacccctggctgtcacagtacttggtgatgaaaagggcgtctatcgaattcaacttt
cacggactctactcgaattttttggatactttggccataattgacatttataagatggtt
gtaaaggagacttttagaaacatcagggtacttcttagatctgataaagcaattgcaaat
ttttccgatcggtctctattaaaaaatttgggacactggttgggaatgttgactttggcg
cgcaacaaacccattctacagatagagctcgacttgaaatcgcttttggtggaggcgtac
cataagggacagcaagaacttctatatgtagtgccatttgtcgccaaggttttagaatct
tgttcgaaaagcaaagtattcaagcctccaaatccctggactatggcgcttatgaacgtt
ttagcagagttgcattctgagccagacttaaagctaacactcaaatttgaaatcgaagtg
ctttgcaaaaacttggaaatcgatgtggcccagttaaaaccggctgtgtttctcaaggat
cccgaaaggattcggaagatcgagtatcagttgtctcagcccgccaaaaaagagcccatt
ctatcgtcctcccaaggaaatcaaagcagtagtctggcggaaccagaactcgcaaatatt
attgctggccaatcgacaagttctccggtattggtaatgcaaaatatcagtacgactccc
acttcatctatgggagctcctcctgaaccccgcttcagttattccgacattcaaatgact
gggatgcaggccctccaaaactacatcgtcatttcgcccaacatcctgctgttccagagc
cactcgcagctcaaggggctggtacgcaccgcggtagaacgcgcggtacaagaatggatc
gccccggtcgtagacagggccattaaaatatcgctccccgcctgcgagaacattatccgg
aaggactttgccttggaaccggacgaagagcggatgcgtctcgctgcccactacatggtg
cggaacttcacggctgggatggtgatgatcacctgcagagatcagttgttgaccgcgatt
aacactcatttaaaacaggcactaaatgcccagatggtgacacccggcgtccaacagaag
gacatgatagaacaggccgccagcatagtggccagcgaaaacatggaactagcctgtgtc
tttgtccagaaaacggccgtggaaaaggccattcccgaaatcgataaaagattgatgagc
gagtacgaattaagacgaatcgccaggaaagaaggaaggtgttattgcgacactatagct
ctggcttaccaaggcgatcacatgcccgaaccgattcgcttaaaagtgggcagtttgacg
gggtcccaaatggccgtgtacgaggaattcgcgcggaacatcccgggtttcctgcccagc
gagcgggacgccgccctgctcatgcagaaatcgagcatggccccccagatggagcctcag
tcgcaccccgccacctcgttcgccgtcgggcagtcagtgctcgccaatgacgaagtgtcg
atgctgttcgaaaagctgacggccgacgtggaccagttcatccagctgaccagcactcaa
gcgcagtacagtcatatgtatcagaacatgctagtgatcagggactgtgtgtttcatttc
ttgcgcacaagggacgtcaatcctccacaggctattgtgcataagtgtgttgagagcttg
caagattgtttagttcccactctaagcgataacgatcctgtcgttttgcgttttaaggaa
gtgatcattcgaattttgaaagccatacaaggaatcgcaagccaacagtggaccaataaa
ctcgttacgagatatttgacggaatgtcgcgaggaacaacaaagatataacatcgatgcc
gtcgacaccttgataaaatcgggactagtgaatgtgccccaatacgacatggcgctggcc
cagtgtttggaaaacggactgaattatatgggagttagtttcgctatgcaattggtcgaa
ctttgcctaataaacgataggtccggccagtttgtaacggaaagcgatttgtgcaacacc
gtcgaagtgctggccaagatccaaactcagacgagacaacctcctgaaggtctcggaaac
ataattgatattatcagacaaaatcccgataccgctttctttggggatcgggcgcccatg
ggccccaccgttcacattcataacggcattttacaggtgcgcgccccgaactacgaggac
ccacccggtctagtggaaaagactgacttcctattgcgagaatggatcaacatttacaac
tcgcaacatcaaggccgcgactccaccaaagccttcagtattttcgtgcaccaaatgaac
gtgcacggcattctaaagaccgacgacctaatcacccgcttcttccgcctgtcaactcag
ttgtgcgtagaaacggtttacagagcgcttctagacaaatccaacacaaacatgtcaacg
cgtcctaaatgttaccacaccctagacgcgttcgtccgcttggtgtcgctgctggtcaag
cactctggcgacgccaacaatacgaccaccaaagtacaccttctgaataaggtactgggc
attgttgctggctgtttgttgcaagaccacgacactagaaccgtcgaattccagcagatg
ccctaccaaaggatcttcaccatgctcttcctggaactgaacgcccccgaacccatcttg
gaagccatcaacttccacgtgctcaccgcctactgccacaccttccacattttgaggccg
tcgaaggcggccggtttctgctacgcctggctcgagctaatctcgcaccgagttttcatc
ggccgcatgctggcaaccacgccccagcaaaagtgttggccactgttcgcgcagctcttg
gtcgatctgttccggtatctggctccgttcctgcgcaacgcggaactcgccaaacccgtc
accatgctgtaccggggcactctcagagtacttctggtgctgttgcacgattttcccgag
ttcctatgcgactactactacggcttctgcgacgtgattccgcccaactgcatccaaatg
cggaatctcatcctatccgcttttccgcgaaccatgagactgcccgatccgttcattccc
aatctgaaggtcgatatgcttcccgaaatatcttacgcgcctaggatcaacaccaatatt
tcccttaccatttcaccggcccagtttaagaaggacctggactcttatttgaaggctcgc
gcccccgtcactttcctgtcggagctccggagcaatttacaaatttccaacgagcccggc
gtgcgttacaatatatctctgatgaacgcgctggtgttgtacgtgggcacgcaggccatc
gcctacatcaggaacaagggcctcacgcccagcatgtccacaatcgcgcacagcgctcac
atggatattttccagaacttgaccgttgacttggataccgaggggcgttacttgttcttt
aatgccatggccaaccagctgagataccccaatagccacacccactatttctcctgtacg
ttcctgtatctgttcgcggaggccaatacggaagtgattcaggagcagataacgagggtt
ctcttggagagattgatcgtgaacaggccccatccctggggtcttcttatcacgttcatt
gaactcatcaagaatcccacctacaagttttggcagcaccagttcgtccactgcgctccg
gaaattgaaaaattgttcgagtctgtagcccggtcctgcttcgtgaagacttccgtgcag
atgcaacaggaaactgaagtgccagaatga
DBGET
integrated database retrieval system
