Sitophilus oryzae (rice weevil): 115884129
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Entry
115884129 CDS
T07985
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 1-like
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
soy
Sitophilus oryzae (rice weevil)
Pathway
soy03008
Ribosome biogenesis in eukaryotes
soy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soy00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
115884129
09123 Folding, sorting and degradation
03018 RNA degradation
115884129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soy03019
]
115884129
03009 Ribosome biogenesis [BR:
soy03009
]
115884129
03016 Transfer RNA biogenesis [BR:
soy03016
]
115884129
03036 Chromosome and associated proteins [BR:
soy03036
]
115884129
Messenger RNA biogenesis [BR:
soy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
115884129
mRNA degradation factors
5'-3' decay
5' exonucleases
115884129
Ribosome biogenesis [BR:
soy03009
]
Eukaryotic type
Pre-60S particles
RNases
115884129
Transfer RNA biogenesis [BR:
soy03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
115884129
Chromosome and associated proteins [BR:
soy03036
]
Eukaryotic type
Gene silencing
piRNA pathway
115884129
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Motif
Other DBs
NCBI-GeneID:
115884129
NCBI-ProteinID:
XP_030758488
UniProt:
A0A6J2Y3U6
LinkDB
All DBs
Position
Unknown
AA seq
1512 aa
AA seq
DB search
MGVPKFFRYISERYPCLSEVVKDYQIPEFDNMYLDMNGIIHMCSHPDDNNPHFRITEEKI
FKDIFHYLEVLFRMIRPQKLFFMAIDGVAPRAKMNQQRGRRFRSAKDAEKQEADALKKGE
VLPSESRFDSNCITPGTVFMARLHEQLKYFVVDKLSNDSLWRGVTVILSGHETPGEGEHK
IMDYIRYMRSQPGYDPNTRHCLYGLDADLIMLGLCTHEPHFSLLREEVKFGKKSTKRLSV
PEEITFFLLHLSLMREYLELEFAPVKEKLTNFEYDFEKIIDDWVLMGFLVGNDFIPNLPH
LHIADGALPILYKAYMDVLPTLDGYINEAGTLNLSRFEKFMQKLSDFDIENFEDIRDDKM
FLESKKLMNAEDFLQPLIVDPKVFKELSNMFAYKPKGKSSSQKDTQQNNGDRDIPGELLK
SEKSKSNTDSQLAALIKDTDDMFSEESENDSDKDEDELAFENFKKDYYRNKLDYENVTPE
VLRDQAEGYVRAIQWNLNYYYNGVCSWSWYYPHHYAPYISDIKDFSNLKIDFELGQPFKP
YEQLLAVLPPASKDLLPSAYHALMTSEESVMKEYYPDNFETDLNGKKQEWEAVVLIPFMD
EKLLLESMQSCNDKLTPEELRRNQPGPMLVYXFTSQDMGQYDAPGYFPPVTYRAKLMPLT
IESIRVPRDKLVKGAYPGASFDVYYPGFPTMKHLKYTAQLEKAKVRVFEQPSRYENMILK
IIQEEEIDGENDVPVHMLNTNVFVGWPHLIEARVVAISNAKRKYISMGGQNQYNTEEYDK
KNYFETLYGGIVDRYKNNLGVEVGDVQIVCHVQVMIGRKYVFSPSGRLTLEKQFSENTAV
YPLQTVVSEISVFDQHHSTFRDVLDVFSEGSICFTLCNPYYGSQGIVLDSREIIARGRIK
VCISVTEEPDFEHIRRKYAESARAYKPLHVVSSQLGMSHILFSRTTGSIFVSVKGSSKDV
NIGLDLKLNKRNKETPGYTKRVGTTWYYSDKCLDLVRQYTEKFPEVFCFFCQNVNKHEIA
AKDIFSEDICEKKMSELQTWLKSLPTFNSEKQTCGSNYIEQDIVQKIESTVDEFLKIAQS
KKITMQVKPSLLYKPEIQSKTLAPDDKMTVEILDRIINTRKGFSVPFGLKGTVIAKTESL
TNNDMDVLYDVVFDKTFKDGMTLNCSAERGYRLPKTAFINISYGRRLLEEKTGKQALAES
GQKQSIVLLNNNSQRFFNQFSQNNQLGLNQNKSYLPNYSQAEHNLQGSAFASFNNQANEP
PYQKKPTAANFALQLIYAGMSENKELNAPKNKIKQVEPVQDSTPKSTSSNNNKSCEAPSS
VRLLTYYQSNNLGIPRYQYFQSDGQYRAQITLSNGEIVMGKPGQNKELATENVASDVLHI
LIQRAKGTDASHGPDKNLPVPPKTWVKPQQESTASETKSSRRRNDQALKTALHNPFVPTQ
VIKRQSSKSISETTQGDNSVCVSASSKTQKHLKNTDKPAKNNEKENGNHQNNHHKAKKNR
LPRIAANFSQCK
NT seq
4539 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccaaagttttttagatatataagcgaaagatacccctgtttaagtgaagta
gttaaggattatcagatcccagaatttgataacatgtatttggatatgaacggtataata
catatgtgttctcatcctgatgataacaatccacattttcgtatcacagaggagaaaata
tttaaagatatatttcattatttggaagttttatttcgcatgattaggccccaaaaactg
ttttttatggctattgatggtgtagcaccaagggctaaaatgaaccagcagagggggcgt
aggttcaggtcagccaaagatgcagaaaaacaagaggcagacgctctaaaaaagggtgaa
gttttaccaagcgaatcaaggtttgactcgaattgtatcactccgggaactgtgtttatg
gctcgattacacgaacagttaaagtattttgtagtagataaattatcaaatgattcgtta
tggagaggagtgactgttattttatcaggacatgagacacctggtgaaggtgaacacaaa
attatggattatataaggtatatgaggtcccagccaggttacgaccctaacacaaggcat
tgtttatatggattagatgccgatttaattatgttaggtttgtgtacacatgagcctcat
tttagtttgttgagagaggaggtgaaatttggaaaaaagtctacaaaaagactgtcagtt
ccagaagagattactttttttttacttcacttatcactgatgagagaatatttggaactt
gaatttgcaccagttaaagaaaaattgactaactttgaatatgattttgaaaaaatcatc
gatgattgggttcttatgggatttttagtgggcaatgactttatacccaatttgccacat
ttgcacatagctgatggagcattgcccattttgtataaagcatacatggacgttttacct
acattagatgggtacattaatgaagctggcactttaaatttatcacgtttcgaaaagttt
atgcagaaactatcagactttgacatagaaaattttgaagatattcgtgatgacaaaatg
tttctggaatcaaaaaaattgatgaatgctgaagattttcttcaaccactcattgttgat
ccaaaagttttcaaggaattatcaaacatgtttgcttacaaacctaaagggaaatcttct
tcacagaaagatactcagcagaataatggagatagagatattccaggagagttgcttaag
tctgaaaaatccaaatctaataccgattcgcaattagcagctcttattaaggacactgat
gatatgttttcagaagaatcggaaaacgatagtgataaagatgaggacgaactggcattt
gaaaattttaaaaaggactactatagaaataagctagactatgagaatgtcacacctgag
gtactgcgggatcaggctgaaggatatgtcagagcaatacagtggaacttgaattattac
tacaatggcgtgtgctcttggtcgtggtattatccccaccattatgccccttacatttcc
gatattaaagacttttccaatttaaaaatcgactttgaattgggacaaccttttaaacca
tatgaacaactgttggcagttttgccgccggccagtaaagaccttttgccatctgcttat
catgctttgatgaccagtgaagaatcagtaatgaaagaatattatcctgacaactttgaa
actgatttaaatggtaaaaagcaggaatgggaagctgttgtattgataccttttatggac
gagaaattgcttttggaaagtatgcaatcatgtaacgacaaactaactcccgaagagtta
cggaggaaccagcccggtcccatgctggtttacnactttaccagtcaggatatgggccag
tacgacgctcccggctatttccctccagtgacgtatcgcgccaaactgatgcctcttact
atagagagcatcagggtaccccgcgacaagttggtcaaaggggcttatccgggagccagt
tttgacgtatactatcctgggtttcctaccatgaagcacctgaaatataccgcccagcta
gagaaggcgaaagtacgtgtgtttgagcaacccagtcgttacgagaatatgatactaaaa
attatacaggaggaagaaatagacggggaaaatgacgttccagttcatatgttaaacacg
aatgtttttgttggttggccccatttaattgaagcaagggttgttgccatatcaaacgcc
aaacgaaaatatattagtatgggaggccagaatcagtacaataccgaagagtacgacaaa
aagaattacttcgagacactatatggtggtatagttgacaggtacaagaacaatttgggt
gttgaagtaggagatgtacaaattgtgtgccacgtacaagtaatgatcggtcgcaaatac
gtgttttcccctagcggccgtttgactttggagaaacaattttctgaaaacactgcggta
tatccgttgcaaacggtggtatcggaaataagtgtttttgatcaacaccattcgacgttt
agagatgtcctggacgttttttcggaagggtccatttgtttcacgttgtgtaatccatat
tatgggtctcaaggaatcgtactggacagtcgtgaaatcatcgccagaggaaggataaaa
gtctgcatatctgttacagaagagccagactttgaacatataagacgcaaatacgctgaa
agtgccagagcctacaagccattgcatgtggtttctagccaactaggaatgagtcacatt
ttgttttcaagaaccacaggatcaatattcgtgtctgtaaaaggatcgtcgaaagatgtt
aatattgggctagatcttaaacttaacaagagaaacaaggaaactccaggttacacgaaa
agagtgggtactacgtggtactactcggacaaatgtctcgatttagtaagacaatatacc
gaaaagtttccagaggttttttgctttttttgtcaaaacgtaaataaacatgaaatcgcc
gcaaaggatatattttccgaagatatctgcgagaaaaaaatgagcgagttgcagacctgg
ctaaaaagtttgcccacatttaattcggaaaagcaaacgtgtggtagcaactatatagag
caggatattgtgcaaaaaatagaatctactgtagatgaatttttaaagattgctcagtct
aagaaaattacaatgcaggtcaaaccttcgcttctttataagcccgagatacaaagtaaa
actttggcacctgacgataaaatgacagtagaaatacttgacagaataataaataccagg
aaaggttttagtgtaccgtttggccttaaaggcacggtcatagctaaaaccgagtcatta
accaacaacgatatggacgttttgtacgacgtggtatttgacaaaacgtttaaagatggt
atgactctaaactgttcagcggagagagggtatagattacccaaaactgcgtttataaac
atttcttatggtagaagattactggaggagaaaacaggaaaacaagcattagcagaatct
gggcaaaagcaatctattgttctgctcaacaataatagtcagagattcttcaatcagttc
agtcaaaataatcaactgggtctaaatcaaaacaaatcatatttacctaattacagccaa
gctgagcataatctacaaggttcggcgtttgctagttttaataatcaagccaacgaaccg
ccataccaaaaaaaaccaacagcagcaaattttgccttacaactcatctacgcaggcatg
tcagaaaacaaggaactgaatgcgcctaaaaataaaattaaacaagttgaaccagttcaa
gattcaacccctaaaagtacatcatctaataataataaaagttgcgaagctccctctagt
gtcaggttattaacttattatcagtcaaataacctaggaattccaaggtatcagtatttc
cagtcggatggtcagtatagagctcaaatcactttgtctaatggagagattgtgatggga
aagcccggtcagaataaagaattagccactgaaaatgttgcttctgatgtgttacatata
ctgattcagagggctaagggaactgatgcatcacatggaccagataaaaatcttcctgtg
ccgcccaaaacctgggttaagccacaacaagagagtaccgctagtgaaacaaaatcatca
cggcgtcgtaacgatcaggctcttaaaacagcccttcacaatcctttcgttcctacgcaa
gttattaaaaggcagagtagcaaaagtattagcgaaactactcaaggtgataatagtgta
tgcgtgtctgcatcttccaaaactcaaaaacatcttaaaaacacggataaacctgccaag
aataacgaaaaagagaatgggaatcatcaaaataaccatcataaggcaaagaagaataga
ctacctagaattgctgcaaatttttctcaatgtaaatga
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integrated database retrieval system
