Spathaspora passalidarum: SPAPADRAFT_136405
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Entry
SPAPADRAFT_136405 CDS
T03101
Name
(RefSeq) hypothetical protein
KO
K12590
exosome complex component RRP46
Organism
spaa
Spathaspora passalidarum
Pathway
spaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPAPADRAFT_136405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spaa03019
]
SPAPADRAFT_136405
Messenger RNA biogenesis [BR:
spaa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
SPAPADRAFT_136405
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Sol_i_2
Motif
Other DBs
NCBI-GeneID:
18869967
NCBI-ProteinID:
XP_007374643
JGI:
136405
UniProt:
G3AL85
LinkDB
All DBs
Position
Unknown
AA seq
219 aa
AA seq
DB search
MAFQVQMSVLDNSDGSAELIIGNTKVIASVSGPIEPKQRQELPNQASLEIIIRPAKGLST
TREKLLEDKLRALLQSIIIRYKYPRQLISIVVQFLVTDEDPKFTANELNAAINCCYFALI
DADIALYSSFASVVSCITENKLIQNPTGKELSQSDSHHVVCFNIQEGKADKILLLESQGE
FVQEELFNLLSESVSNAEELHTLQRKYLKEKIDQDYIWK
NT seq
660 nt
NT seq
+upstream
nt +downstream
nt
atggcctttcaagttcaaatgtccgtgttggacaattcagacggttcggcagagttaata
ataggaaatacaaaagtgatagcgtccgtgtccggccctattgaacctaaacaacgtcaa
gaattacctaatcaagcaagtttagaaatcataattagaccagcaaaggggttgtcgaca
actagggaaaagttattggaagataagttacgagctttgttacaatccattattataaga
tacaaataccctcgtcaattgattctgattgttgtgcaatttttagtcactgatgaagat
ccaaaattcactgccaatgaattgaatgctgctataaattgttgttattttgccttgatt
gacgctgatatcgctttatattcttcatttgcttcagttgtgtcctgcataactgaaaat
aagttgatacagaaccctacaggaaaggaactttcccaaagtgattctcatcatgttgta
tgttttaacattcaagaaggtaaagctgacaagatcttacttttggaaagtcagggtgaa
tttgttcaagaggaattgttcaatttattgtcagaaagtgtcagtaatgctgaggaattg
catactctccagcggaagtacttgaaagagaagatcgaccaagattatatatggaagtaa
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