Sphingomonas panacisoli: FPZ24_09290
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Entry
FPZ24_09290 CDS
T07288
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spai
Sphingomonas panacisoli
Pathway
spai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FPZ24_09290 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spai03400
]
FPZ24_09290 (mfd)
Enzymes [BR:
spai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FPZ24_09290 (mfd)
DNA repair and recombination proteins [BR:
spai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FPZ24_09290 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
UB2H
SecA_DEAD
AAA_25
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QDZ07660
UniProt:
A0A5B8LKN6
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All DBs
Position
1821627..1825079
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AA seq
1150 aa
AA seq
DB search
MTDPRKILSANQPLTLAGVPAGFLPVLLADLARAAPARTVLIAPDDAEMRSVASTIQFFA
PEIEVIAYPAWDCLPYDRASPTLRIMAERLAALHRLQAKPKGPQLLVTTANAATQRALTP
FRVRQLVARLAPGERIGRDKLAALLSANGYVRTDTVHDQGEFAVRGGLVDLFPSGEETAL
RLDFFGDEIESVRTFDPSDQRTTGRVDGFTLLPASEALLDEESIKRFRARYRETFGATAT
GDPLYQAISEGRRLAGMEHWLPLFEDRLETLFDHLGDQALVVCEAGVTAAAEQRFEAVTD
YHANRVKAQSGDPGSYRPLPADALYLTPGEWGERLKAAKAHLTTPFHEPESATVIDFDVD
GPRDFAPERSSGVNIYEAVVDHLDKLRKDKKKPILASYSAGSRERLAGLLRDHDLTGAVL
VDTWQEALGAADRGVALTILPLDHGFTAPGIALLTEQDMLGDRLVRRNRRKKSADAFLAE
LATLSPGDLVVHADHGIGRYEGLTQIPVQKAPHDCVALTYAGGDKLYVPVENLEVLSRYG
SDEAGTLDRLGGEAWQRRKSRMKERIREIAGELIATAAERALHPGDVITPDEAGYPAFVD
RFPYEETDDQDRAIDDVLGDLSAGKPMDRLVVGDVGFGKTEVALRAAFAAAMAGKQVAIV
CPTTLLARQHYNNFVARFEGFPIKVGRLSRLVGTAEAKATREGLADGTIDLVVGTHAILA
KQIEFKRLGLVVVDEEQRFGVTHKERLKTLRADVHVLTLTATPIPRTLQMAMSGIRELSV
IQTPPVDRLAVRTYVMPWDPVVLREALLREHYRGGQSFFVTPRIKDLPDIEQFLREQVPE
VRYVVAHGQMSAGEVEERMSAFYDKKFEVLVSTTIVESGLDIPSANTMIVHRADMFGLAQ
LYQLRGRVGRSKTRAYAYMTTPPNRIITETADKRLKVLSDLDTIGAGFQLASYDLDIRGA
GNLLGDEQSGHIREVGYELYQSMLEEAIMEAKAGGMAPRPRDFSPQITVDAPIMIPEDYV
PDLDLRMGLYRRLNDLDEQDGIEAFAAELIDRFGPLPEATANLIKLIEVKLNAKRACVAK
IDVGPKGALVSFHDDKPPNVDGLLAYVARLQGVAKLRPDSKLVIAREWGDPQARLNGALQ
LSKGLAKAAA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacccgcgcaaaattctctcggcgaaccagccgctgacgctggccggcgtgccg
gcgggattcctgccggtgctgctggccgacctggcgcgcgccgcgccggcgcggacggtc
ctgatcgcgcccgacgatgccgagatgcgcagcgtcgcctcgacgatccagttcttcgcg
cccgagatcgaagtgatcgcatatccggcgtgggactgcctgccctatgaccgcgccagc
ccgacattgcgcatcatggccgagcggctcgcagcgttgcaccggctccaggccaagccc
aagggtccgcaactcctcgtcaccacggcgaacgccgctacgcagcgtgcactgacgccg
tttcgcgtgcggcaactggtcgcgcggctggcgccgggcgaacggatcgggcgcgacaag
ctggcggcgttgctatcggccaacggctacgtccgcaccgataccgtccacgaccagggc
gagttcgcggtgcgcggcgggctggtcgacttattcccgagcggcgaggaaacggcgctg
cggctcgatttcttcggcgacgagatcgagagtgtgcgcaccttcgacccgagcgaccag
cgcacgacggggcgcgtcgatggcttcacgctgttgccggcatccgaggcgttgctcgac
gaggaatcgatcaagcgattccgcgcgcgttaccgcgagacgttcggcgcgaccgcgacc
ggcgatccgctctatcaagcgatcagcgaaggtcggcgtcttgccggcatggagcattgg
ctcccgcttttcgaggataggctggagacgctgttcgaccatcttggcgatcaggcgtta
gtcgtatgcgaagcaggcgtcacagcggcggccgaacagcgtttcgaggcggtgaccgat
taccacgccaatcgggtcaaggcgcagtcgggcgatcccggaagttatcgtccgctaccc
gccgacgcgctgtatctgacgcccggcgagtggggcgaaaggctcaaggcggccaaagcg
catctgaccacaccgttccacgaacccgaaagcgccaccgtcatcgatttcgacgttgac
ggcccgcgcgacttcgcgcctgaacggtcgagcggcgtcaacatctacgaagccgtggtc
gatcacctcgacaagctacgcaaagacaagaagaaaccgatcctcgccagctattccgct
ggatctcgcgagcgactcgcggggctattgcgcgaccacgacctgaccggcgctgtgctg
gtcgatacctggcaggaagcgctcggcgcggcggatcgcggcgtcgcgctgaccatcctg
ccgctcgaccatggtttcaccgcccccggcatcgcgcttctgaccgagcaggatatgctc
ggcgaccgtctcgtccgccgcaaccgccgcaagaaatcggccgacgcgttcctcgccgaa
ctcgcgacactctcccccggcgacctcgtcgtccatgccgatcatggtatcggtcgctac
gaggggctgacccaaatcccggtccaaaaggcgccgcacgattgcgtcgcgctgacgtat
gccggcggcgacaagctgtacgtcccggtcgaaaatctcgaagtcctgagtcgatacggc
tccgacgaggccggcacgctcgaccgtctcggcggtgaggcgtggcagcggcgcaagagc
cgcatgaaggagcgcatccgcgagatcgccggcgagctgatcgcgaccgccgccgaacgt
gcgctccacccgggcgatgtcatcacgcccgacgaggcaggttaccccgcattcgtcgat
cgcttcccctatgaggaaaccgacgatcaggatcgtgcgatcgacgacgtgctgggcgat
ctgtcggcgggcaagccgatggaccggctggtcgtcggcgatgtcgggttcggcaagacc
gaggtcgcattgcgcgccgcgttcgccgcggcgatggcgggcaagcaagtcgcgatcgtc
tgccccaccacgctgctcgcgcgccagcactacaacaatttcgtcgcgcggttcgaaggt
ttcccgatcaaggtcgggcggctgtcacgtctggtcggcaccgccgaagccaaggccacc
cgcgaaggcctggccgacggcacgatcgatcttgtcgtcgggacgcacgcgatcctggcc
aaacagatcgaattcaagcggctagggctggtcgtggtcgacgaggagcagcggttcggc
gtgacgcataaggagcgactcaagacgctgcgcgccgacgtccatgtcctgacgctcaca
gccacaccgatcccgcgcacgctgcagatggcgatgtcgggcatccgcgaactgtcggtg
atccagactccgccggtcgatcgtctcgcggtgcgcacctacgtcatgccatgggatccg
gtcgtgctgcgcgaggcgttgctgcgcgagcattatcgcggcgggcagagcttcttcgta
acaccccgcatcaaggacctgcccgacatcgagcagttcctgcgcgaacaggtgccggag
gtccgctacgtcgtcgcgcacggccagatgagcgccggcgaggtcgaggagcggatgtcc
gccttctacgacaagaagttcgaagtgctcgtctcgaccaccatcgtcgaaagcgggctc
gacatcccgagcgccaacacgatgatcgtgcatcgcgccgacatgttcgggctcgcccaa
ctctaccagctgcgcgggcgcgtcgggcggtcgaagacgcgcgcctatgcctatatgacg
accccgccgaaccgcatcatcaccgaaaccgccgacaagcggctcaaggtgttgagcgat
ctcgacacgatcggcgcgggtttccagctggctagctacgatctcgacattcgcggtgcg
ggcaatctgctcggcgacgagcaatcggggcatatccgcgaggtcggctacgagctctat
cagtcgatgctcgaagaggcgatcatggaggcgaaggccggcggcatggcgccgcgtccg
cgcgatttcagtccgcagatcaccgtcgatgcgccgatcatgatcccggaggactatgtc
cccgacctcgacctgcgcatggggctgtatcgtcgcctcaacgacctcgacgagcaggat
ggcatcgaggcctttgctgcggagctgatcgaccgcttcggcccgctacccgaagcgacc
gcgaacctgatcaagctcatcgaagtgaagctcaacgccaagcgcgcgtgcgtagcgaag
atcgatgtcgggccgaagggtgcgttggtcagcttccacgacgacaagccgcccaacgtc
gatggtctgctcgcctatgtcgcgcggttgcaaggcgtggctaagctgcgccccgacagc
aagctggtgattgcgcgcgagtggggcgacccgcaggcacggctgaacggcgcgctgcaa
ctgtcgaaaggactggccaaagcggccgcataa
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