Stenotrophomonas pavanii: STNY_R08130
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Entry
STNY_R08130 CDS
T07567
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
spaq
Stenotrophomonas pavanii
Pathway
spaq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spaq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
STNY_R08130 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spaq03021
]
STNY_R08130 (rpoB)
03400 DNA repair and recombination proteins [BR:
spaq03400
]
STNY_R08130 (rpoB)
Enzymes [BR:
spaq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
STNY_R08130 (rpoB)
Transcription machinery [BR:
spaq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
STNY_R08130 (rpoB)
DNA repair and recombination proteins [BR:
spaq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
STNY_R08130 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
PrmC_N
Motif
Other DBs
NCBI-ProteinID:
BCX42649
UniProt:
A0A246KZZ3
LinkDB
All DBs
Position
910413..914567
Genome browser
AA seq
1384 aa
AA seq
DB search
MTSYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQENVDPAKRTDHGLHAALKS
VFPIASYSGNAALEYVGYKLGEPVFDERECRQRGMSYGAPLRVTVRLVIYDRESSTKAIK
YVKEQEVYLGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR
IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEMLAEFFEINTFHINPD
EGVQLELVPERLRGETLGFDLADGDKVIVEAGKRITARHIKQLEASGIAALAVPDDYIVG
RILSHDVVDASTGELLAQANDEITDEQLQAFRKAGVDAVGTLWVNDLDRGPYLSNTLRID
PTKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSAVGRMKFNRRVGRKET
TGEAVLYDSKYFGERNDEESKRLVAAHGDSSDILDVIKVLTEIRNGRGVVDDIDHLGNRR
VRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLS
QFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLI
NSLAVYARTNQYGFLETPYRKVVDGKVYDEVEFLSAIEENEYVIAQANALTDAKGTLTEQ
FVPCRFQGESLLKPPAEVHFMDVSPMQTVSIAAALVPFLEHDDANRALMGANMQRQAVPT
LRAQKPLVGTGIERAVARDSGVTVNARRGGEIVQIDAARIVVKVNEEEIVGATDAGVDIY
NLVKYTRSNQNTCINQRPLVQVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNGYN
FEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVV
YIGAEVRAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDV
QVFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILEAAIYMRLRSQIVGKVVNGGAGLK
KGDVITDAFLDGLKKADWFALRMKDEDASEAIERAQKQIQAHEKEFERRFADKRGKITAG
DDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMASGETVDIVLN
PLGVPSRMNIGQILEVHLGWAAKGLGRKIQAMLEAQAAVADLRKFLDDIYNHDDTNVANR
VDLSQFSDEELLRLARNLTDGVPMATPVFDGATEAEIKRMLELADLPSSGQTQLYDGRTG
EAFDRHTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAINME
LEDN
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcctattcgttcaccgaaaaaaagcgtatccgcaaggatttcggcaagcagcgc
tcgattctcgaagtgccgttcctgctcgccatccaggtggattcctatcgtgaattcctg
caggaaaacgtcgatccggccaagcgcacggaccacggcctgcatgccgcgctgaagtcg
gtcttcccgatcgccagctacagcggcaatgctgccctggaatacgtcggctacaagctg
ggcgaaccggtcttcgacgagcgtgagtgccgccagcgcggcatgagctacggcgccccg
ctgcgcgtcaccgtgcgcctggtgatctacgaccgcgagtcgtcgaccaaggccatcaag
tacgtgaaggagcaggaggtctatctgggcgaaatcccgctgatgaccgagaacggcacc
ttcatcgtcaacggcaccgagcgcgtcatcgtctcccagctgcaccgctcgccgggcgtg
ttcttcgaccacgaccgtggcaagacccacagctcgggcaagctgctgtacagcgcccgc
atcattccttaccgcggctcctggctggacttcgagttcgacccgaaggacgcgctgttc
acccgtatcgaccgccgccgcaagctgccggtgtcgatcctgctgcgcgcgcttggctac
agcaacgaagagatgctggccgagttcttcgagatcaacaccttccacatcaacccggat
gaaggcgtccagctggagctggtgcccgagcgcctgcgtggcgaaaccctgggcttcgac
ctcgccgacggcgacaaggtcatcgtggaagccggcaagcgcatcaccgcacgccacatc
aagcagctggaagcctcgggcatcgccgccctggccgtgccggacgactacatcgtcggc
cgcatcctgtcgcacgacgtggtcgatgcctcgaccggcgaactgctggcccaggccaac
gacgagatcaccgacgaacagctgcaggccttccgcaaggccggcgttgacgcggtcggc
accctgtgggtgaacgacctggatcgtggcccgtacctgtccaacaccctgcgcatcgac
ccgaccaagacccagctggaagccctggtcgagatctaccgcatgatgcgtccgggcgag
ccgccgaccaaggatgccgcgcagaacctgttccacaacctgttcttcaccttcgagcgc
tacgacctgtccgcggtcggccgcatgaagttcaaccgtcgcgtgggccgcaaggaaacc
accggcgaagccgtgctgtacgacagcaagtacttcggtgagcgcaacgacgaagagtcc
aagcgcctggtcgccgcccacggcgacagctccgacatcctggacgtgatcaaggtcctg
accgagatccgcaacggtcgcggcgtggtcgacgacatcgatcacctgggcaaccgtcgc
gtgcgctcggtcggtgaaatggccgagaacgtgttccgcgtcggcctggtccgtgtcgag
cgcgcggtcaaggagcgcctgtcgatggccgagtcggaaggcctgaccccgcaggagctg
atcaacgccaagccggtcgccgctgccatcaaggagttcttcggctcctcgcagctgtcg
cagttcatggaccagaacaacccgctgtcggaagtgacgcacaagcgtcgcgtctcggcc
ctgggcccgggcggcctgacccgcgagcgcgccggcttcgaagtgcgcgacgtgcacccg
acccattacggccgcgtctgcaccatcgaaaccccggaaggcccgaacatcggcctgatc
aactcgctggccgtgtacgcccgcaccaaccagtacggtttcctcgagaccccgtaccgc
aaggtcgtggacggcaaggtctatgacgaagtcgagttcctgtcggcgatcgaagaaaac
gagtacgtcattgcgcaggccaacgcgctgaccgacgccaagggcaccctgaccgagcag
ttcgtcccgtgccgcttccagggcgaatcgctgctgaagccgccggcggaagtccacttc
atggacgtctcgccgatgcagaccgtgtcgatcgcggccgcgctggttccgttcctggag
cacgatgacgccaaccgcgcactgatgggcgccaacatgcagcgtcaggccgtgccgacc
ctgcgtgcgcagaagccgctggtgggtaccggcatcgagcgcgccgtggcgcgcgactcc
ggcgtgaccgtgaacgcccgccgtggcggcgagatcgtgcagatcgacgcggcccgcatc
gtggtcaaggtcaacgaggaagagatcgttggcgccaccgacgcaggcgtggacatctac
aacctggtcaagtacacccgttcgaaccagaacacctgcatcaaccagcgtccgctggtc
caggtcggtgacgtcatcgcccgcggcgacgtgctggccgacggtccgtccaccgacatc
ggcgaactggccctcggccagaacatgctgatcgcgttcatgccgtggaacggctacaac
ttcgaagactccatcctgctctccgagcgcgtggtggaagaggatcgttacaccacgatc
cacatcgaagagctgacctgcgtcgcgcgtgacaccaagctggggccggaggaaatctcc
gccgacatcccgaacgtctccgagcaggcgctgaaccgcctggacgagagcggcgtggtg
tacatcggcgcggaagtccgtgccggcgacatcctggtcggcaaggtcaccccgaagggc
gaaagccagctgaccccggaagagaagctgctgcgcgcgatcttcggcgagaaggcttcg
gacgtgaaggacagctcgctgcgcgttccgccgggcatggacggcaccgtcatcgacgtg
caggtcttcacccgcgacggcatcgagaaggacaagcgcgcccgccagatcgaagagtct
gaaatcaagcgcgtcaagaaggacttcgacgaccagttccgcatcctggaagccgccatc
tacatgcgtctgcgttcgcagatcgtgggcaaggtggtcaacggcggcgctggcctgaag
aagggcgacgtgatcaccgacgccttcctggacggcctgaagaaggctgactggttcgcg
ctgcgcatgaaggacgaagacgcttcggaagccatcgagcgcgcgcagaagcagatccag
gcgcacgagaaggaattcgagcgtcgcttcgccgacaagcgcggcaagatcaccgccggt
gacgacctcgctccgggcgtgctgaagatggtcaaggtgttcctggccgtgaagcgccgc
atccagccgggcgacaagatggcaggccgccacggcaacaagggtgtggtctccaacgtg
gtgccggtcgaggacatgccgtacatggcctcgggcgaaaccgtggacatcgtgctgaac
ccgctgggcgtgccgtcgcgcatgaacatcggccagatcctggaagtgcacctgggctgg
gcggccaagggcctgggtcgcaagatccaggcgatgctggaagcccaggccgcggtggcc
gacctgcgcaagttcctggacgacatctacaaccacgacgacaccaacgtggccaaccgt
gtcgacctgtcgcagttcagcgacgaggaactgctgcgcctggcccgcaacctgaccgac
ggcgtgccgatggccaccccggtgttcgacggcgccaccgaagcggaaatcaagcgcatg
ctggaactggccgacctgccgagcagtggccagacccagctgtacgacggccgcaccggt
gaagcctttgatcgccacaccaccgtcggttacatgcactacctgaagctgaaccacctg
gtcgacgacaagatgcacgcgcgttcgaccggtccgtactcgctcgtcacccagcagccg
ctgggcggcaaggcgcagttcggcggccagcgcttcggtgaaatggaagtctgggcgctg
gaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaagtccgatgacgtg
cagggccgcaaccagatgtacaagaacatcgtcgacggtgagcacgagatggtcgcgggc
atgccggaatccttcaacgtgctcgtgaaggaaatccgctcgctggccatcaacatggaa
ctggaagacaactga
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integrated database retrieval system
