Sphingopyxis sp. BSN-002: L7H23_16780
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Entry
L7H23_16780 CDS
T10439
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
spbs Sphingopyxis sp. BSN-002
Pathway
spbs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spbs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L7H23_16780 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spbs03021
]
L7H23_16780 (rpoB)
03400 DNA repair and recombination proteins [BR:
spbs03400
]
L7H23_16780 (rpoB)
Enzymes [BR:
spbs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L7H23_16780 (rpoB)
Transcription machinery [BR:
spbs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L7H23_16780 (rpoB)
DNA repair and recombination proteins [BR:
spbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L7H23_16780 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Phage_Mu_Gam
Motif
Other DBs
NCBI-ProteinID:
UKK84201
LinkDB
All DBs
Position
3393678..3397856
Genome browser
AA seq
1392 aa
AA seq
DB search
MATKAKSVGKALEATATKRIRKLFGNIHEAVEMPNLIEVQRESYEQFLRSDPSIGYVSGL
EKTLRSVFPIRDFAGTAELDFVHYELEEPKYDVEECRQRGITYAAPMKVTLRLIVFEVDS
ETDTRSVLDIKEQDVYMGDMPLMTENGTFFVNGTERVIVSQMHRSPGVLFDHDRGKTHSS
GKYLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTSLLYALGMSGEEILNHFYDR
LVFERASNGWKVPFVVENWRGAKPAFDVVDAKTGEVVFAAGHKISPRLANKAAKDGLDTL
LIPTEEIFGRYSAYDLINEATGEIYIEAGDEVTADNLEKLDGAGIDKLVLLDIDHNNTGP
WIRNTLKADKAEDRDQALSDIYRVMRPGEPPTRETAEALFDGLFFDGERYDLSAVGRVKL
NMRLGLDAEDTVTTLRSEDILAVVKELVNLKDGKGEIDDIDNLGNRRVRSVGELLENQYR
VGLLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVT
HKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYG
FIETPYRRIIDGKVTNEVVYLSAMEEQKHTVAQANADLNPDGSFIDELISAREAGEFLMA
PREQITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPVVGTGME
GTVARDSGAAIAARRGGVIDQVDATRIVIRATDMVEPGKSGVDIYRLQKFQRSNQNTCIN
QRPLVKVGEIVRTGDIIADGPSTELGELALGKNVLVAFMPWNGYNYEDSILISERIVKDD
VFTSIHIEEFEVTARDTRLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVGPGDILAGK
ITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTVVEVRVFNRHGIDKDERAI
AIEREEIERLKQDADDERAILNRATFSSLKDLLIGQTTSAVPKGLKKGDTVTEEMLVDLD
RADWWKLAVVEDNAQTALEAIKAQYDDAIKRINAKYEDRVEKLQRGDELAPGVLKMVKVF
VAVKRKLQPGDKMAGRHGNKGVISRILPNEDMPFLEDGTPVDIVLNPLGVPSRMNVGQIL
ETHLGWASRGLGRQVTQALDEWRDANPDATGGQMPEAVRDQLEHVYGTEYLDDIKSRDAD
SIVELASNLRVGVPFATPVFDGAKEADVTNMLTLAGLHESGQSDLYDGRTGDKFDRKVTV
GYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTL
QEMLTVKSDDVIGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELSSYADEDP
DEGPDALPEAAE
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaaggcgaagtcggtgggcaaggccctcgaagcaaccgcgaccaagcgaatc
cgcaagctgttcggcaacatccacgaagcggtggagatgcccaacctcatcgaggtgcag
cgcgaatcctatgagcagttcctgcgctcggacccctcgatcggatatgtctcgggcctc
gaaaagacgctccgcagcgttttcccgatccgcgatttcgccggcaccgccgagctggac
ttcgttcactacgaactcgaagagccgaagtacgacgtcgaggaatgccgtcagcgcggc
atcacctatgcggcgccgatgaaggtcacgctgcgcctgatcgtgtttgaagtcgacagc
gaaaccgacacccgttcggtcctcgatatcaaggagcaggacgtttacatgggcgacatg
ccgctcatgaccgagaacggcaccttcttcgtcaacggcaccgagcgcgtcatcgtgtcg
cagatgcaccgttcgccgggtgtgctgttcgatcacgatcgcggcaagacccactcgtcg
ggcaagtatctcttcgccgcgcgcgtcattccgtatcgcggttcgtggctcgacttcgaa
ttcgacgccaaggacatcgtcaacgtccgtatcgaccgcaagcgcaagctgccggtcacc
agcctgctttacgcgctgggcatgtcgggcgaggaaatcctcaaccacttctatgaccgt
ctggtgttcgagcgcgcctcgaacggctggaaggttccgttcgtcgtcgaaaactggcgc
ggcgcgaagcccgcgttcgacgtcgtcgacgccaagaccggcgaagtcgtcttcgccgcc
ggccacaagatcagcccgcgccttgccaacaaggccgcgaaggacggtctcgacacgctg
ctgatcccgaccgaggaaatcttcggccgttacagcgcctatgacctgatcaacgaggcg
actggcgagatctacatcgaagccggcgacgaagtgaccgccgacaacctcgaaaagctc
gatggcgccgggatcgacaagctcgtcctgctcgacatcgaccacaacaacaccggtccg
tggatccgcaacacgctgaaggccgacaaggccgaagaccgcgaccaggcgctgagcgac
atctatcgcgtcatgcgccccggcgaaccgccgacgcgcgaaaccgcggaagcgctgttc
gacggcctgttcttcgacggcgaacgctatgacctgtcggccgtcggccgcgtcaagctg
aacatgcgccttggcctcgacgccgaggacacggtgacgacgctccgcagcgaggacatc
ctcgccgtggtcaaggaactggtgaacctgaaggacggcaagggcgaaatcgacgatatc
gacaacctcggcaaccgtcgtgtccgctcggtcggcgagctgctcgagaaccagtatcgc
gtcggcctgctccgcatggagcgcgccgtgaaggagcgcatgagctcggtcgacgtgtcg
accgtgatgccgaacgacctgatcaatgcgaagcccgcggtcgccgcggtgcgcgaattc
tttggctcgtcgcagctctcgcagttcatggaccagaccaacccgctgtcggaagtcacc
cacaagcgccgcgtctcggcgctcgggccgggcggtctgacccgcgagcgcgcgggcttc
gaagtccgcgacgttcacccgacccactatggccgtatctgcccgatcgaaacgccggaa
ggcccgaacatcggtctgatcaacagcctcgcgacctttgcgcgcgtcaacaagtacggc
ttcatcgagacgccgtaccgccgcatcatcgacggcaaggtgaccaacgaggtcgtctat
ctgtcggcgatggaagagcagaagcacacggttgcgcaggcgaacgccgacctcaacccc
gacggcagcttcatcgacgagctgatctcggcgcgcgaagcgggcgaattcctgatggcg
ccgcgcgagcagatcacgctgatggacgtgtcgccgaagcagctcgtttcggtcgcggca
tcgctgatcccgttcctggaaaacgatgacgccaaccgcgcgctcatgggatcgaacatg
cagcgtcaggccgttccgctgctccgcgccgaggctccggtcgtcggcacgggcatggaa
ggcaccgttgcgcgcgactcgggcgcggcgatcgcggcgcgccgcggcggcgtgatcgat
caggtcgacgcaactcgtatcgttatccgtgcgaccgacatggtcgaacccggcaagtcg
ggcgtcgacatctatcgcctgcagaagttccagcgttcgaaccagaacacctgcatcaat
cagcgtccgctggtgaaggtgggcgagatcgtccggaccggcgacatcatcgccgacggt
ccgtcgaccgagcttggcgaactggcgctcggcaagaacgtgctcgtcgcgttcatgccg
tggaacggctacaattatgaggactcgatcctcatcagcgaacgcatcgtgaaggacgac
gtcttcacctcgatccacatcgaggaattcgaagtcaccgcgcgcgacacgcgcctcggg
ccggaagacatcacgcgcgacatcccgaacgtcggcgaggaagcgctccgcaacctcgac
gaagcgggcatcgtctatatcggcgccgaagtcggcccgggcgacattctggccggcaag
atcacccccaagggtgaatcgccgatgacgccggaagaaaagctgctgcgcgcgatcttc
ggtgaaaaggccagcgacgtgcgcgacacctcgctccgcctgccgccgggcgtgtcgggc
acggtcgtcgaagtccgcgtcttcaaccgtcacggtatcgacaaggacgaacgcgcgatc
gcgatcgaacgcgaagaaatcgagcgcctgaagcaggatgccgacgacgagcgcgcgatc
ctcaaccgtgcgaccttctcgagcctgaaggacctgctgatcggtcagacgaccagcgcg
gtgccgaagggcctgaagaagggcgatacggtcaccgaggagatgctggtcgatctcgac
cgcgccgactggtggaagctggccgttgtcgaggacaatgcccagaccgctctcgaggcg
atcaaggcgcagtatgacgacgcgatcaagcggatcaacgcgaagtatgaagatcgcgtg
gagaagctgcagcgcggcgacgaactcgccccgggcgtgctcaagatggtcaaggtcttc
gtcgcggtgaagcgcaagctgcagccgggcgacaagatggccggccgtcacgggaacaag
ggcgtcatcagccgcatcctgccgaacgaggacatgccgttcctcgaagacgggacgccg
gtcgacatcgtgctgaacccgctgggcgtgccgtcgcgcatgaacgtcgggcagatcctc
gaaacgcaccttggctgggcctcgcgcggcctcggccgtcaggtgacgcaggcgctcgac
gaatggcgcgatgccaatcccgacgcgacgggcggtcagatgcccgaagcggtccgcgac
cagctcgagcatgtctatggcaccgaatatctggacgacatcaagtcgcgcgatgcagac
agcatcgtcgaactggcgtcgaacctgcgcgtcggcgtgccgttcgcgaccccggtgttc
gacggcgcgaaggaagccgacgtcacgaacatgctgaccctcgcgggcctgcatgaatcg
ggtcagtcggacctgtacgacggccgcaccggtgacaagttcgaccgcaaggtgaccgtg
ggctacatctacatgctgaagctccaccaccttgtcgacgacaagatccacgcgcgttcg
atcgggccgtacagcctcgtcacccagcagccgctgggcggtaaggcgcagttcggtggc
cagcgcttcggtgaaatggaggtctgggcgctccaggcctatggcgcggcgtacacgctg
caggaaatgctgacggtgaagtccgatgacgtgatcggccgcaccaaggtttatgaagcg
atcgtcaagggcgacgacaccttcgaggccggcattcccgaaagcttcaacgtgctcgtc
aaggaaatgcgctcgctgggcctcaacgtcgagctttcgtcctatgcggacgaagacccc
gacgaaggtccggacgctcttccggaagccgcggaataa
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