Shewanella putrefaciens CN-32: Sputcn32_3766
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Entry
Sputcn32_3766 CDS
T00513
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
spc
Shewanella putrefaciens CN-32
Pathway
spc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Sputcn32_3766
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spc03021
]
Sputcn32_3766
03400 DNA repair and recombination proteins [BR:
spc03400
]
Sputcn32_3766
Enzymes [BR:
spc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Sputcn32_3766
Transcription machinery [BR:
spc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Sputcn32_3766
DNA repair and recombination proteins [BR:
spc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Sputcn32_3766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ABP77473
UniProt:
A4YBZ0
LinkDB
All DBs
Position
complement(4371070..4375101)
Genome browser
AA seq
1343 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKFTDQDPTGERGLEAAFRSVFPIK
SFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAGTVKDIKEQ
EVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDALFVRIDRRRKLPATIILRALEYSTQEILDLFFERVEFKIKKDTLVMA
LVPERLRGETASYDIKDAEGSVLVEAGRRITARHIRQLEKTNTTELEVPVEYIVGKYAAQ
DYIDPDTGEVLVSANSEISLEDLAKLSLAGIKDISTLYINELDHGAYISDTLRIDSTTNR
LEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLSIPDDEGSGV
LSKEDIVAVMKNIIHIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL
SLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPYRKVIDGVI
TDEVEYLSAIEEGRYVIAQANIEVDANGRMVEEQIACRHKGESTFMRASDIQYMDVSPQQ
IISVAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERTLAVDSGVVVVAK
RGGYIDYVDASRIVVKVNEDELRPGEAGIDIYNLTKYTRSNQNTCINQRPCCAVGEPVVR
GDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI
ARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAVEIEEMHIAQARKD
LSEEFKILEEGVLSRARNLLLGAGFTETQIAAMPRKDVLVQVIDDEAKQTELEQLAEQHE
ELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKI
CPIEDMPYDEQGNPVDIVLNPLGVPSRMNIGQVLEVHMGAAAKGIGNKITAMLEEQRELA
EVRGYIKQVYELGDEVQQRVDIDSFTDDEVMRLAQNLKGGIPIATPAFDGAKEKEIKQML
ELAGLPTSGQLKLYDGRTGNEFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL
GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMQPGM
PESFNVLLKEIRSLGINIELDQE
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctattctgaaaagaagcgtattcgcaaagactttggtaagcgtccacag
gtgttggatattccttaccttttgtctattcagttagactcttttaagaagttcaccgat
caagatcctaccggtgagcgcggtcttgaagccgccttccgtagcgtttttcccatcaag
agcttttctggtaattcagaactgcaatacgtcagctataagcttggcgagcctgttttt
gatgtgaaagagtgtcagatccgcggtgttacgtattcagcaccactacgcgttaaatta
cgcatggtgttgtatgaccgtgaagcagcggcaggcactgtaaaagatattaaagagcaa
gaagtctacatgggcgatatcccattgatgacggataacggtacctttgttatcaacggt
actgagcgtgtaatcgtatctcaattacaccgtagccctggcgtgttcttcgatcatgac
cgtggtaaaacccactcatcgggtaaggtgctgtataacgcacgtattattccttaccgt
ggttcatggcttgactttgaattcgatcctaaagatgcacttttcgtacgtattgaccgt
cgccgtaaattaccagcgaccatcattctgcgtgcattagaatactctactcaagagatc
ctcgacctgttcttcgaacgtgttgagttcaagatcaagaaagatacgttagtcatggcg
ttagttcctgagcgtctgcgtggcgaaactgccagctatgacatcaaggatgctgaaggt
tctgtgctggttgaagcgggccgtcgtattactgcgcgccatattcgccagttagaaaag
actaataccactgaactcgaagtgccagttgaatatatcgtgggcaaatatgctgctcaa
gattatatcgatccggacacgggtgaagttttagtatctgcaaacagtgaaatcagctta
gaagacttagcgaaattatcactggctggcattaaagatatcagcacgttgtatatcaac
gagctagatcatggtgcttatatttcagatacgctgcgtatcgattcaaccactaaccgc
ttagaagcgctggttgaaatctatcgtatgatgcgtcctggcgagccaccaaccaaagat
gcggcagaagcactattccagaacttgttcttcagtgaagaacgctatgacctgtctaaa
gtcggtcgtatgaagttcaaccgtcgtctgagcatccccgatgacgaaggtagcggtgta
ttgtctaaagaagacatcgtcgcggtaatgaagaacatcattcatatccgtaacggtttc
gacgaagtcgatgacatcgatcacttaggtaaccgtcgtattcgtagcgtcggtgaaatg
gctgaaaaccaattccgtgttggtttagtccgtgttgagcgcgctgtgcgtgaacgtcta
tctttaggcgatctgaacgagctgatgccacaagacttaatcaacgctaagccaatttct
gctgcagtgaaagagttcttcggttcttcacagctgtcacaattcatggaccaaaacaac
ccgctgtcagaagtcacgcataagcgtcgtatttctgctcttggccctggtggtttgact
cgtgaacgtgcaggctttgaagtccgtgacgtacatccaacgcattatggtcgtttatgt
ccaattgagacccctgaaggtccaaacattggtctaatcaactcattagcaagttttgcc
cgtactaactcatacggcttcttagaaacgccataccgcaaggtgattgatggcgtgatt
actgacgaagtggaatacttgtcagcgattgaagaaggtcgttatgtcattgcacaggca
aacatcgaagttgatgcaaatggccgcatggttgaagagcagatcgcctgtcgtcataaa
ggtgaatctacctttatgcgcgcatctgatattcaatacatggacgtatcgccacaacag
attatttctgttgctgcatcactgatcccgttcttagaacacgacgacgctaaccgtgca
ttgatgggtgcgaacatgcaacgtcaagccgtacccacactgcgctctgaaaagccatta
gtcggtactggtattgaacgtacgctagctgttgattctggtgttgtagttgttgctaag
cgtggtggttatatcgactacgttgatgcgagccgtatcgttgttaaagtcaatgaagat
gagctacgtccaggcgaagcgggtatcgacatttataacctgactaaatacacccggtct
aaccaaaatacttgtatcaaccagcgcccttgttgtgccgttggtgagccagtcgttcgt
ggtgacgtgttagcagacggtccgtctactgacttaggtgacttagctcttggccagaac
atgcgcatcgcgttcatgccttggaacggttacaacttcgaagactcgatcttaatttct
gagcgcgtagcacaggaagaccgtttcaccactatccacatccaagagctgtcttgtatt
gctcgtgataccaaactgggtagcgaagaaatcaccgctgatattccaaacgtaggtgaa
tctgctctgtcgaaactcgacgaatcaggtatcgtttatattggtgcagaagtgaagggt
ggcgatattctggtcggtaaagtgacgccaaaaggcgaaactcagctaacaccagaagag
aagttactccgtgctatcttcggtgagaaagcgtctgatgtgaaagacagctcactgcgt
gtacctaactctgttaagggcactatcatcgacgttcaggtatttacccgtgacggcgtt
gaaaaagataaacgtgcagttgaaatcgaagagatgcacatcgctcaagcacgtaaagac
ttaagcgaagagttcaagatccttgaagaaggtgtattgagccgtgctcgtaacctattg
ttaggtgcaggtttcacagaaacacaaatcgcagcgatgccacgtaaggatgtattggtt
caagttattgacgatgaagcaaaacaaactgaacttgagcaattagctgagcagcatgaa
gagctgaaagcagacttcgataagaagtttgaaattaaacgtcgcaagatcacccaaggt
gatgacttggcgccaggcgtactgaagatcgttaaggtttacttagcggttaagcgtact
atccaacctggtgacaagatggcgggtcgtcatggtaacaaaggtgttatctctaagatt
tgcccaatcgaagacatgccatatgacgaacaaggtaatccagtagacatcgtattgaac
ccactaggtgttccgtcacggatgaacattggtcaggtacttgaagtccatatgggcgcc
gccgctaaaggtattggtaacaagatcactgcaatgcttgaagaacagcgcgagctggct
gaagtacgcggttacatcaaacaagtgtatgagttaggtgacgaagtgcagcagcgcgtc
gatatcgattcattcaccgatgatgaagtgatgcgtcttgcccaaaacttgaagggtggt
atcccgattgcgactcctgcattcgacggtgctaaagagaaagagatcaagcagatgctt
gagcttgcaggcttgccaacctctggtcagctgaagttgtatgatggtcgtaccggtaac
gaatttgagcgtcaagtaaccgttggttacatgtacatgctcaaactgaaccacttagtt
gatgacaagatgcacgcccgttctaccggttcgtacagcttagtgactcaacaaccactg
ggcggtaaagctcagttcggtggtcagcgtttcggtgagatggaagtgtgggcactagaa
gcatacggtgccgcttatacgcttcaagaaatgctcactgtgaaatcggatgacgttaac
ggtcgtactcagatgtataagaacatcgtcgacggtaaccatcagatgcaacctggcatg
ccagagtccttcaacgtgttactgaaggagatccgttcactcggtattaatatcgagttg
gatcaggaataa
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integrated database retrieval system
