Streptococcus pneumoniae D39 (virulent serotype 2): SPD_1759
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Entry
SPD_1759 CDS
T00413
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
spd
Streptococcus pneumoniae D39 (virulent serotype 2)
Pathway
spd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SPD_1759 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spd03021
]
SPD_1759 (rpoB)
03400 DNA repair and recombination proteins [BR:
spd03400
]
SPD_1759 (rpoB)
Enzymes [BR:
spd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SPD_1759 (rpoB)
Transcription machinery [BR:
spd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SPD_1759 (rpoB)
DNA repair and recombination proteins [BR:
spd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SPD_1759 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
NusG_add
Motif
Other DBs
NCBI-ProteinID:
ABJ54731
UniProt:
Q04IK6
LinkDB
All DBs
Position
complement(1755554..1759165)
Genome browser
AA seq
1203 aa
AA seq
DB search
MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKAFLDHGLKEVFEDVLPISNFTD
TMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLINKETGEIKTQEVFFGDFPIMT
EMGTFIINGGERIIVSQLVRSPGVYFNDKVDKNGKVGYGSTVIPNRGAWLELESDSKDIT
YTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVRNTVEKDIHKNPMDSRTDEALKE
IYERLRPGEPKTAESSRSLLVARFFDPRRYDLAAVGRYKINKKLNVKTRLLNQTIAEPLV
DPETGEILVEAGTIMTRSVIESIESHLDGDLNKIVYIPNDAAVVTEPVVLQKFKVVAPTD
PDRVVTIIGNANPDDKVRTVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGELL
ANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHNP
LSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGH
LNKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEYTVAQANSRLNEDGTFAEKIVMGRH
QGVNQEYPANIVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQAP
YVGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLDVYHIQKFRRSNSGTAY
NQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKD
DVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVG
KVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRVNGDELQSG
VNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPS
RMNIGQVMELHLGMAARTLGIHIATPVFDGASSEDLWSTVKEAGMDSDAKTILYDGRTGE
PFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFGEMEVWALE
AYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMRV
LDEDDQEVELRDLDEGMDEDVIHVDDLEKAREKAAQEAKAAFEAEEAEKATKAEATEEAA
EQE
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatgacgttcaatacgggaaacatcgtacccgtcgtagtttttcaagaatc
aaagaagttcttgacttaccaaatttgattgaaattcaaactgactcattcaaagctttc
ctagaccacggtcttaaggaagtgtttgaagatgtattgccaatttcaaacttcacagac
acaatggagttggaatttgttggatatgaaatcaaggaaccaaaatacacgctagaagaa
gctcgtatccacgatgctagctactcagcaccaatttttgtaaccttccgtttgatcaat
aaagaaacaggcgaaatcaagacccaagaagttttctttggtgatttcccaatcatgaca
gaaatgggtactttcatcatcaatggtggtgaacgtattatcgtttctcagttggtccgc
tcaccaggtgtttactttaacgacaaagtagacaaaaatggtaaggtgggctatggttca
actgttatccctaaccgtggagcttggttggaacttgaaagcgactcaaaagatatcacc
tacactcgtatcgaccgtactcgtaagattccatttacaaccttggttcgtgctcttggt
ttctcaggtgatgatgaaatctttgatatctttggtgacagcgaattggttcgcaacact
gttgaaaaagatatccacaagaatccaatggactctcgtacagacgaagccttgaaagaa
atttacgaacgccttcgtccaggtgagcctaagacagctgaaagctcacgtagcttgctt
gtggctcgcttctttgacccacgtcgctatgacttggcagcagttggtcgttacaaaatc
aataaaaaactcaatgttaaaacacgtttgctcaaccaaaccattgcagagccattggta
gaccctgaaactggagaaatcttggtagaagctggtacgattatgactcgtagcgtgatt
gaaagcattgaaagccatttggatggcgacttgaacaagattgtctacatcccaaacgat
gcagccgttgtgactgagcctgttgttcttcaaaaattcaaggttgttgctccaactgat
ccagatcgcgtcgtaacgatcattggtaatgctaacccagatgacaaggttcgtacggtg
actcctgcagatatccttgctgagatgagctacttcctcaacttggctgaaggacttggc
cgtgtagatgatatcgaccaccttggaaatcgtcgtatccgtgcggttggtgaattgctt
gccaaccaagtacgtttgggactttctcgtatggaacgtaatgtccgtgaacgtatgtct
gttcaggacaatgaagtcttgacaccacaacaaattatcaatatccgtcctgtaacagct
gcagttaaagaattctttggttcatcacagttgtcacagttcatggaccaacacaacccg
ctttctgagttgtctcacaaacgccgtttgtcagccttaggacctggtggtttgactcgt
gaccgtgccggatatgaagtgcgtgacgtgcactacactcactatggtcgtatgtgtcca
atcgaaacacctgaaggacctaacatcggtttgatcaataacttgtcatcttacggacac
ttgaacaaatatggttttgttcaaacaccataccgtaaggttgaccgtgaaacaggtgtt
gtcacgaacgaaattgtttggttgacagctgatgaagaagatgaatatactgtagctcag
gctaactctcgtctgaatgaagatggaacctttgctgagaagattgtcatgggacgtcac
caaggggtcaaccaagagtatccagctaatattgttgactacatggacgtttcaccaaaa
caggtagttgccgttgcgacagcatgtattcctttcttggaaaacgatgactccaaccgt
gccctcatgggagccaatatgcaacgtcaggctgtgccattgattaatcctcaggcacct
tacgttggtactggtatggaataccaagcagcccacgattctggtgcggctgtgattgct
cagtatgatggtaaagttacttacgcagatgctgacaaggtagaagttcgtcgtgaagat
ggttcattggatgtttaccacatccaaaaattccgtcgttcaaactcaggtactgcttac
aaccaacgcactctcgtaaaagttggtgatgtcgttgaaaaaggcgatttcatcgctgac
ggaccttctatggaaaatggagaaatggcgcttggacaaaacccaatcgttgcctacatg
acttgggaaggttacaacttcgaggatgccgttatcatgagcgaacgcttggtgaaggac
gatgtctacacatctgttcaccttgaagaatacgaatcagaaacgcgcgatacaaagctt
gggcctgaagaaatcactcgcgaaattccaaacgttggtgaagatgccctcaaagacctt
gacgaaatggggattatccgtattggtgctgaggttaaagaaggtgatattcttgtaggt
aaagtaacacctaagggtgagaaagatctttcagctgaagaacgtctcttgcacgctatc
tttggagacaagtctcgtgaagtgcgtgatacttctcttcgtgtaccacacggtgccgat
ggtgtcgttcgtgatgttaagatctttacacgtgtaaatggagatgagttgcaatcaggt
gttaacatgttggttcgtgtttacatcgctcaaaaacgtaagattaaggtcggagataaa
atggccggacgtcacggaaacaaaggggttgtctctcgtatcgttcctgtagaagacatg
ccttaccttccagacggaactccagtcgacatcatgttgaacccacttggggtgccatca
cgtatgaatatcggtcaggttatggagcttcaccttggtatggcagctcgtactcttggt
attcacattgcgacaccagtctttgatggagcaagttctgaagatctttggtcaactgtt
aaagaagcaggtatggatagcgatgccaagacaatcctttacgatggacgtacaggtgaa
ccatttgataaccgtgtttctgttggagtcatgtacatgatcaaactccaccacatggtt
gacgataaattgcacgcgcgttcagtcggaccttactcaactgttacccaacaaccactc
ggaggtaaagctcagtttggtggacaacgtttcggtgagatggaggtttgggctcttgaa
gcctacggtgcgtcaaatgtccttcaagaaatcttgacttacaagtcggacgatatcaac
ggacgtttgaaagcctatgaagctattacaaaaggcaaaccaattccaaaaccaggtgtt
ccagaatccttccgagttcttgtcaaagaattgcaatctcttggtcttgacatgcgtgtc
ctagacgaagatgaccaagaagtggaacttcgcgacttggatgaaggaatggacgaagat
gtcatccacgtagatgaccttgaaaaagcccgcgaaaaagcagcccaagaggctaaagca
gcctttgaagctgaagaagctgagaaagcaacaaaagcggaagcaacagaagaagctgct
gaacaagaataa
DBGET
integrated database retrieval system
