Solanum pennellii: 107002569
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Entry
107002569 CDS
T04130
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107002569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107002569
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107002569
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107002569
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
107002569
NCBI-ProteinID:
XP_015056121
UniProt:
A0ABM1FFG4
LinkDB
All DBs
Position
1:94628628..94653766
Genome browser
AA seq
2411 aa
AA seq
DB search
MIPFGSAASTQIRFLFQSLNGSNSDTVIHELRQYLSYGVEGSILLLRTCIDHLNVYGKDS
KNTQLDPVFASIFRCILDKPNFSTVLSESLKDTAISEEFLVNLSNAFHLAISEKIGVGLA
LSDSENVDVKKCGTNYCMGQIAELRSTNSSLDDAKQIQNVLMFLNQSEGLSKHVDLFMHL
LSLVPSKEAQFILTPLLSDEFHEANFLRNLDFLNDDGEDDFDVLLADMEKEMSIADIMKE
LGYGCTASILQCKEMLSLFLPLTEVTVARILGMVVRTCSGIEDNLNMFSTFRTALGSISA
TDPSPLNSWNADILIDAIKQLAPELNWVTVLDNLDHEGFYIPDGAAFSFLMSIYEHACQD
PFPLETICGSIWKNAEGQLSLLKYAVSVPPEVFTFAHSRRQLDCADAVNNHKIQNGHANH
AWLCLDLLEVLCQLAEIGYASSVRSILEHPLKHCPEVLLHGMAHINTAYNLLQHEVAAAA
FPVMLKNAAARGMMILHLWHVNTSILCWGVVEALDVDLDNMHTVLDACQELKILSSVLDR
IPFAFGIRLAALASRKELLDLEKWLSNNLNTYKDTFYEACLKFLREIHLAALDDASNHFD
PPSALLTIYSVLKSHSSLVSSCHLSEELDKLHIRYMDAKLRLKSVGGADTSISDGGGSDA
IEAEANVYFHQMFSGQLSNDATVQMLARFKESTEKREQAIFECMIANLFEEYKFLSKYPE
RQLRIAAVLFGSLIKNQLVTHLALGIALRAVLDALRKPADSKMFAFGILALEQFVDRLIE
WPQYCNHILQISHLRVANPELVVFIERALARISLAHSESEVGHSPAVDQFHGPIPSSPMN
SEGQTFQVVGQSGLQQSMQGPSSSQLPLRQQSPIEERKPSAALSGYLKPALSPAVQPATV
PSSDNAGIQKPQGPSSTSAVLTSSPGFLRPSRAITSGRFGSALNIETLVAAAERRETPIE
APASEIQDKISFIINNLSATNFEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLY
LKFLDKANSKSLFKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKITIGKNHV
LRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILELLAEIYA
MPNLKMNLKFDIEVLFKNLGVDLKEVVPSSLLKDRVREVEGNPDFSNKDAGGSSQPQMVA
DAKSGIISSLNQVELPLDVASPHPSGPSRILTQYAAPLHLPSAPMMEDEKLAALGLSDQL
PSAQGLLQGQSPFSVSQLPATASNIEQQVVVNPKLHALGLQLHFQSVLPMAMDRAIKEIV
SSIVQRSVSIATQTTKELVLKDYAMESDETRIRNAAHLMVASLSGSLAHVTCKEPLRGSI
SGQLRNLLQGLTIASDLLEQALQLVTNDNLDLGCAMIEQAATEKAIQTIDGEIAQQLAIR
RKQREGPGASYFDASPYTQGHMGGLPEALRPKPGRLSHSQQRVYEDFVRLPWQNQSSQSS
NAVTAVPSISSSSVGVSRAYMSGTGQLNSNLYSSGLVNAAITAVPQPLEISEETDTSSQL
NSASSPHLGTGDNVTSSSFETEAIVEPFTSVSAPESHPVEPSSLAKESGASLQPSNATAT
SERVGNSISEPLLTTGDALDKYQIISEKLENLVSEEAEEAEIQALIAEVPVIILKCISRD
EAALAVAQKAFKRLYENATNSAHVGAHLAILSSIRDVSKLFVKELTSWVIYSDEERKFNK
DITVGLIRSELLNLAEYNVHMSKLLDAGRNKSATEFAVSLIQTLVISDSRVISELQNLVD
ALAKIAARPGSPESLQQLVEIAKNPGANAAALSSVSFGKEDGNKQSRDKKIAVTATGTRE
DYGVSECIEPDSASFREQVSMLFAEWYRICEIPGANDATHAHYILQLNQSGLLKGDETSE
RFFRRLTELSVSHCLSSEVMSSTPQSHQAQPLSFLAIDIYAKLVFSILKFYPVDQGSSKL
LLLPKVLAVTVRFIQRDADEKKMIFNPRPYFRLFINWLVDLSSLDPVFDGANFQVLTALA
NAFHALQPLKVPGFSFAWLELVSHRSFMPKLLAGNAQKGWPYFQRLLVDLFQFMEPFLRN
AELGEPVQFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNIILSAFPRNMR
LPDPSTPNLKIDLLAEISQSPRILSEVDAALKSKQMKGDVDEYLKTRQQGSPFLSELKQK
LLLSPSEAAKAGTRYNVPLINSLVLYVGMQAIQQLQAKTPHAQSMPSSVPFAVFLVGAAL
DVFQTLIMDLDTEGRYLFLNAVANQLRYPNNHTHYFSFILLYLFAESNQEMIQEQITRVL
LERLIVNRPHPWGLLITFIELIKNPRYNFWSRPFTRCAPEIEKLFESVSRSCGGPKPVDE
NVVSGGIPDIH
NT seq
7236 nt
NT seq
+upstream
nt +downstream
nt
atgattccttttggctccgctgcttctactcagattcggtttctgttccagagcttgaac
ggttccaattctgacactgtaatccatgagctccgtcagtatctgtcatatggagttgaa
gggagcatattgcttcttcggacctgcatcgatcatctgaatgtttatgggaaagactcg
aagaacacacagctggatcctgtatttgcttccattttcagatgcatcttggacaagcca
aatttcagcactgttctttctgaatccctcaaggacactgcaatcagtgaggagttttta
gtgaatctatcaaatgctttccacttggcaatatctgaaaaaatcggagttggccttgcg
ttgtcagactcagaaaatgttgatgtcaagaaatgtggaaccaattactgcatgggccag
attgcagaattacgttccaccaactcttctttagatgatgccaagcaaattcagaatgtt
cttatgtttctgaatcaatctgaaggcctctctaagcatgtagacttgtttatgcatttg
ctatcacttgtcccgtcaaaagaagcccagttcattttaactccattgctatctgatgaa
tttcatgaagctaattttttgaggaacttagatttcttaaatgacgacggtgaagatgat
tttgatgttcttttggcagatatggagaaagaaatgagcattgcagacatcatgaaggaa
ttgggttatggttgcactgcttctatcttgcaatgcaaagaaatgttatccttatttttg
ccgctgactgaagtgactgttgctaggatacttggtatggttgtacgtacctgttcaggt
atcgaggataaccttaacatgttctcaacgttccgtactgctcttggtagcatctctgcg
actgatccatcaccattgaattcctggaatgctgacatccttattgatgcaattaagcaa
cttgctccagaacttaactgggtaactgttttagataatctagatcatgagggtttttat
attcccgacggagcagccttttcctttttgatgtccatttacgaacatgcctgtcaggat
ccttttcctcttgaaactatttgtggttctatctggaagaatgctgagggtcaactttcc
ttactcaagtatgctgtgtcagtgcctcctgaagtatttaccttcgcacattctaggagg
caactggattgtgctgatgcggtgaacaaccataaaatccaaaatggacatgctaatcat
gcatggttgtgtcttgaccttctcgaagttctttgccagcttgctgagataggttatgca
agctctgtgcggtccatcctggagcaccctctgaagcactgtccagaagtcttgcttcat
gggatggcccacattaatactgcatataatctcctccagcatgaagttgccgctgctgct
tttcctgttatgctaaaaaatgctgctgctaggggtatgatgattcttcatttgtggcat
gttaatactagcatcttgtgttggggtgttgtagaagcattggacgttgatctggacaac
atgcacacagttttggatgcctgtcaagagctgaagattctatcatcagtactagatagg
ataccttttgctttcggcatcagacttgctgcccttgcttcccgcaaggagctgttggat
ttagagaaatggttgagcaataacttgaacacatacaaagataccttctatgaggcatgc
ctaaagttcttgagggaaatacatcttgctgctctagatgatgcctccaaccattttgat
ccccccagtgctcttttgactatttattcagtccttaagtctcattctagcttagtttct
tcctgccacttatctgaggagctggacaagttgcacataagatacatggatgctaaatta
aggcttaaaagtgttggtggtgctgatacatccatttctgatggtggtggttctgatgct
attgaagcagaagcaaacgtatactttcatcaaatgttctctggtcagctgagtaatgat
gcaacagttcaaatgcttgcccgtttcaaagaatcaactgaaaagagggagcaagcaatt
ttcgagtgcatgatcgctaatctgtttgaagaatacaaatttctctccaagtacccagaa
aggcagcttagaattgcagctgttctatttgggtcgcttattaagaatcagctggtaact
catcttgcacttggtattgccttgcgagctgtcttggatgcgttgcgcaagcctgctgat
tcgaagatgtttgcttttgggattttggcacttgaacagttcgttgatcgtctgattgaa
tggccccaatactgcaaccatatcttgcaaatatctcatctccgagtagctaatccagag
cttgttgtgttcattgaacgggcacttgctaggatatcactggcacattctgagtcagag
gtgggtcacagccctgctgttgatcaattccacggtcctatcccatcttccccaatgaat
tccgagggtcaaacatttcaagtggttggacagagtggtttgcagcaaagtatgcaagga
ccctcttcaagccagcttcctctgaggcaacagagccccatagaggagagaaaaccctct
gctgctctctctggctacttgaagccagctttatcacctgcagtgcaacctgccacagtt
ccttcaagtgataatgctggcattcagaagccacaaggtccaagcagtacttcagcagta
ctgacatcttctcctggttttcttcgcccatctagagccattacctcaggaaggtttggt
tctgcactgaatattgaaacacttgttgcagctgcagagagaagagaaacacccatagag
gctcctgcatcagaaatacaggataagatttcatttattatcaataacttatctgcgaca
aattttgaggctaaagcaaaagagttcactgaaattttgaaagagcagtactacccatgg
tttgctcagtatatggtgatgaaaagagcgagcattgagccaaattttcatgacttgtac
ctgaagttcttagataaagccaattcaaaatctctgttcaaggagattgtccaagcaacc
tacgagaactgcaaggttcttttagggtcagagttgataaagtcaagttcggaagagcgt
tctttgctgaaaaaccttggaagctggctaggcaaaatcacaattggaaagaatcatgtc
ttgagggcgcgagagattgatccgaagtctttgattattgaggcatatgaaaaaggtttg
atgattgcagttattcctttcacatcgaagattctggaaccatgccaaagcagtctagca
taccaaccacctaacccatggaccatgggcattcttgaattacttgctgagatttatgca
atgccaaatcttaaaatgaacctcaagtttgacattgaggtcctgttcaaaaatcttggt
gtggatctaaaagaggtagttccaagttctcttcttaaagaccgagtgagagaagtggaa
ggaaatcccgacttctcaaacaaggatgctggtggatcttcccaaccacagatggtggcc
gatgccaaatctggcattatatcttcactaaaccaggttgaactaccacttgatgttgcc
agtcctcatcctagtggcccttcacgaattttaactcagtatgctgctccacttcatctt
ccatctgctccaatgatggaggatgagaagcttgcagcgcttggcctgtctgatcagctt
ccttctgctcaaggtcttttacaagggcaatcaccattctctgttagtcagcttcctgca
actgcatccaatatagagcagcaagttgttgtcaatcctaagcttcatgctctgggcctg
cagttgcattttcagagtgtacttcctatggctatggatagagctatcaaagagatagtg
tccagcattgtgcagcgcagtgtttctatagcaactcagactaccaaggaacttgttttg
aaggactatgcgatggaatcggatgagacccggatacgtaatgctgcacatttgatggtc
gccagcttgtctggaagccttgctcatgtgacatgcaaggaacctttacgtggttcgata
tcaggccagcttcgtaatttacttcagggattgaccattgcgagtgacctccttgaacaa
gctcttcagcttgttactaatgataatctcgatcttggctgtgccatgattgaacaagca
gctacagagaaggctatacagactattgatggagaaatagctcaacagctggccataagg
aggaaacagagagagggtcccggtgcctcatattttgatgcaagcccctatacacagggt
catatgggtgggttaccagaagctcttcgccctaaacctggccgcttatcccattctcag
caacgcgtttatgaggatttcgtccgcttaccttggcaaaatcaatcaagccaaagctca
aatgctgtgactgctgttccttcaatttcttccagcagtgttggtgtctccagggcgtat
atgtcaggaactggacaattgaactccaacctttactcgtctggtcttgtgaatgcagca
ataactgctgttccgcagccattggaaatatcagaagagacagatacttcatctcaactt
aatagtgcttcctctccccatcttgggacgggtgataatgtcacttctagcagttttgaa
acggaggctattgttgaaccattcacatcggtctcagctcctgaatcgcatccagtggaa
ccatccagtcttgcaaaggaatcaggagcttccttacagccatcaaatgcaacagctacc
tctgaacgtgttggaaatagtatctccgagccgttgctgactactggtgatgcgttggat
aagtaccagattatctctgaaaagcttgaaaacctggtgagtgaagaagctgaagaggca
gaaattcaggcacttattgctgaagttccggtaatcatcctcaaatgtattagtagagat
gaggccgccttggcagtggcccagaaggctttcaagagattgtatgagaatgctacaaat
agtgctcatgttggtgcccatcttgctattctgtcttcaatccgtgatgttagcaaactt
tttgttaaggagctaactagttgggttatttactctgatgaggagagaaagttcaacaaa
gacattacagttggtttgattcgtagtgaactgctaaaccttgccgagtataatgtgcac
atgtctaaattacttgatgctggcagaaacaagtctgctactgaatttgctgtatctctt
attcaaacactggtgataagtgattctagagtcatatctgagctgcagaaccttgttgat
gcacttgctaagattgcagccagaccaggttctcccgagtctttacaacaacttgttgag
attgctaagaaccctggtgctaatgctgctgcgctctctagtgtatcttttgggaaggag
gatggcaacaagcaatctagagacaaaaagattgccgttactgctactggtaccagagaa
gattatggtgtttctgaatgtattgaaccagattctgcaagtttccgcgagcaggtctct
atgttgtttgctgagtggtaccgtatttgtgaaattcctggagcgaatgacgcaactcat
gctcattatatcttgcaattaaaccagagtggcctattaaaaggcgatgaaacttcagag
cgttttttccgcagactcacggaactttctgtttcacattgtctttcgtctgaggtcatg
agttccacccctcagtctcaccaagcacaaccactatcattccttgcaatcgatatctat
gccaaactagtgttctcaattttgaagttttatcctgtggatcaaggatctagtaaatta
ttgctgctgccaaaggttctcgctgtcactgtaagattcatccagagggacgctgatgaa
aagaagatgatctttaatcctagaccatattttaggcttttcattaattggttagtggat
ctcagttccctggaccctgtttttgatggtgcaaattttcaggttttaacagctttagcc
aatgctttccatgcccttcagcccctcaaagttccaggattcagctttgcatggcttgaa
cttgtaagtcaccgaagttttatgcctaaactacttgctggaaatgctcagaaggggtgg
ccttactttcaacgactattggtggatctcttccagtttatggagccctttctgaggaac
gctgagctaggagaaccggtccagtttctgtataaagggactctcagggttttgttggtc
ctcctccatgattttccggagttcctctgtgactaccatttcagcttctgtgatgttatc
cctccaagctgcatacagatgcgaaatataattttaagtgcatttcctcgcaacatgagg
cttcctgatccatcaactcccaacttaaagattgatctactagcagagattagtcaatcc
cctcgcattctttctgaagttgatgcagctcttaaatcaaagcagatgaagggtgatgta
gatgaatacctgaagacaaggcaacaggggtccccatttttgagtgaattaaaacagaag
ttactgctttctccaagtgaagctgccaaggctgggacgcgctacaatgtacccctgatc
aactcccttgtactctatgttggaatgcaggctatccagcagctccaggcaaaaactcct
catgctcagtcgatgcccagtagtgttccatttgcagtattcttggttggtgctgctcta
gatgtattccagactttgataatggacttggacaccgaggggcgttacttgtttttaaat
gcagtcgctaaccaattgcgatacccaaataatcacacacattacttctcctttattctg
ctctacctatttgcggaatcaaaccaggagatgatccaagaacagataaccagggtccta
ttagaacgcctgattgtaaatcgacctcatccatggggtcttctgatcacattcattgaa
ctgataaagaatccaaggtacaatttttggagtcgaccatttacaagatgtgcgccagag
atcgaaaagctgtttgaatcagtctcaagatcttgtggtggccctaaacctgtggatgag
aacgtggtgtcaggtggaatacctgatatccattag
DBGET
integrated database retrieval system
