Solanum pennellii: 107004961
Help
Entry
107004961 CDS
T04130
Name
(RefSeq) pentatricopeptide repeat-containing protein At2g15820, chloroplastic isoform X1
KO
K27936
pentatricopeptide repeat-containing protein, chloroplastic
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spen03041
]
107004961
Spliceosome [BR:
spen03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
107004961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LAGLIDADG_2
PPR_2
PPR
PPR_3
PPR_long
ARM_TT21_N
Motif
Other DBs
NCBI-GeneID:
107004961
NCBI-ProteinID:
XP_027768703
LinkDB
All DBs
Position
11:62391706..62397230
Genome browser
AA seq
816 aa
AA seq
DB search
MSTPLLCNTSLIQSSMPTVLRPPSSPLRHHHGGRRHHRHHLLPSSPFFLPLKPLSLSPSI
SLYTPFSSSSTSPQQLLLDSLENQVDFDNWDPVSASGVAESFNFDDSFDSVELKKFETPA
IEVRELEDIPDQWRRARLAWLCKELPAHKTPTMVRILNAQRKWFRQEDGSFVAVHCTRIR
ENEAAFRVYKWMMQQHWFRFDFALATKLADFLGKERKHLKCREIFDDIINQGRVPCESTF
HILIIAYLSSSGPSVLDEACNIYNRMVHLGGYKPRLNLHNSLFKALLGKTSSESKQFLKQ
AEFIYQNLTSSGLEIHRDIFGGLIWLHSYQDVVDMERIAALRAEMRSRGIKESKEVLVSV
LRACSKDGNVEEAERTWSKLLSIDGSPPSQAFVYRMEVYAKIGEPTKSLKVFRRMQEQLG
STSVAAYHKIIKVLSKYQKLDLADSIMSEFINSGMKQLVPSFIDLMRMYSVAGLHEKLES
TFLWYREVCHPNLTVFNIYLDLLVNTGNLSLAEEIFHEMRGNVAIGVDSRACNSILRGYM
TSAEYVKAVKIYNLMRQKKYDVEIESSLMERLDYVLSLREKVVEKPIRLKLTAEQREVLT
GLLLGGVQIRSDGERRLHAIHYEFNEESRIHSIFKRHIHDEFHEWLGSHDMMVDSTADIP
SSFTTISHSDFTFYANQFWPNGRPCIPKLIHRWLSPRVLAYWYMYGGYRTSSGDILLRVK
GSSEGVVSILKALKAKSLHCRVKNRGRVFWIGFLGDNATFFWKMVEPFILDELKGLLKAG
GDSNGSLEIQCINFDSESESDEKKSGYSEPDTSLSD
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgtccactccactgttatgtaatacttcccttatccaatcctccatgcccaccgtcctc
cgccctccctcctccccactccgccaccaccacggcggccggcggcatcatcgccaccac
ctcttaccttcatcaccctttttccttcccctaaaacccctttcattatctccctcaata
tccctttacacccccttttcttcatcttccacttcaccccaacaacttctactcgattcc
ctagaaaatcaagttgatttcgacaattgggaccccgtttctgcttctggggttgctgaa
agtttcaattttgacgattcttttgattctgtagagttgaagaagtttgaaaccccagct
attgaggtgagggaattagaggatatacctgatcaatggcgtagggcaagattagcttgg
ctttgtaaagagcttcctgctcataagacgcctactatggttaggattttgaatgcacaa
aggaagtggtttaggcaagaagatgggagttttgttgctgttcattgtacgcgaattcgc
gaaaatgaagctgcttttagggtttacaaatggatgatgcagcaacattggtttcgattt
gattttgctctagctacaaaactagcagatttcttgggaaaggaacgaaagcacttgaag
tgccgggagatttttgatgacataattaatcagggacgagtgccttgtgaatctacattc
catattctcattattgcctatcttagttcatctggaccatcagtgttagatgaagcatgt
aacatctacaatcgcatggtgcacttgggaggttataagcctcggcttaacttacacaat
tctctgtttaaagctcttttggggaagacatcgagcgagagtaaacaatttctgaaacag
gctgaatttatatatcagaacttgacttcctctggattggaaatacacagagatattttc
gggggtcttatatggcttcacagttatcaagatgtggtcgatatggaaagaatcgctgca
ctaagagcagaaatgcggtctagaggaattaaagagagcaaagaggtacttgtgtcagtt
ttaagagcttgctcgaaggatggaaatgtggaggaagccgaaagaacttggtcaaaactt
ctctccatcgatggcagtcctccttctcaagcttttgtctatcgtatggaagtatatgca
aagattggagaacctacaaaatctttgaaagtatttaggaggatgcaggaacaactgggt
tccacctccgttgcagcataccataaaataataaaggtgctgtctaaatatcaaaaacta
gaccttgcagattctatcatgtccgagttcataaacagtggtatgaaacagctggtccca
tcattcatcgatttgatgaggatgtactccgttgcaggtttacatgagaaactggaatct
acctttctctggtaccgtgaagtctgccatccgaatctgacagtttttaatatttatttg
gatttgttggtgaatactggcaatctgagcctggctgaagaaatcttccatgaaatgcgt
gggaatgtggcaattggtgttgattctcgtgcttgcaacagtatcttgagaggctatatg
acctctgcagagtatgtgaaggcagtaaagatatacaatttgatgcgccaaaagaaatac
gacgttgagattgaatcttcattgatggaaagacttgattatgttcttagcttgcgggag
aaagtagttgaaaaacctattaggctgaagctcacagcagagcaacgagaggttttgaca
gggttgcttcttgggggtgtgcaaattagatcagatggagagagaagattgcatgcaatc
cattatgaatttaatgaagagtcgaggatccattccatttttaagagacacatacatgat
gaatttcacgagtggttaggctctcatgatatgatggtggatagcactgcggacattcct
agttcttttactaccatttcacattctgattttactttctatgctaatcagttctggccc
aatggacgtccttgtataccaaaacttatacatagatggttgtcacctcgcgttcttgct
tactggtatatgtacggtggttaccggacatcatctggtgatattctgttgagagtaaag
ggaagttcagagggtgttgtgagtattcttaaagcactgaaagccaaatcgttacactgc
cgagtaaaaaatagagggagggtcttttggataggatttctgggggacaatgctacattt
ttctggaagatggtagagcccttcattcttgatgagttaaagggactccttaaagcaggt
ggcgactcaaatggatccctggaaatccaatgtatcaattttgacagcgaatcagagtct
gacgagaagaaatcaggttacagcgaacctgacacgtccttgtctgattga
DBGET
integrated database retrieval system
