Solanum pennellii: 107007424
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Entry
107007424 CDS
T04130
Name
(RefSeq) cleavage stimulation factor subunit 50 isoform X1
KO
K14406
cleavage stimulation factor subunit 1
Organism
spen
Solanum pennellii
Pathway
spen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107007424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107007424
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
107007424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
Beta-prop_EML
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_DCAF4
Ge1_WD40
Beta-prop_NOL10_N
Cytochrom_D1
Beta-prop_NWD2_C
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
107007424
NCBI-ProteinID:
XP_015061531
UniProt:
A0ABM1FTL0
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Position
12:49124563..49156242
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AA seq
437 aa
AA seq
DB search
MGSNHNNDNLEHKLQAGKLFRHVNSLIVAHLRDNNLNQAASAVASATMTPMNVEAPPNKL
LELVAKGLAVDKDETLRGVSTAVPFDPIVTAGYGSIPAPRAAYVDFSSMNNTKGPSKNIP
KHESRHISEHKNVARCARFSPDGRFLATGSADTSIKLFEIVKVKQMKQPEARDGPVRPVV
RTFYDHQQPINDLDFHPQNTVLISGSKDRTIKFFDFSKAVAKRAFRVIQDTHNVRSVSFH
PSGDYLLAGTDHSIPHLYDINTFKCYLPLNFQDMGVNSAINQVRYSSTGGMYVTASKDGA
IRLWDGVTASCVRSIDGAHGAAEATSANFTKDQRYILSSAKDSSVKLWEVGTGRLVKQYV
GATHTQLRCQAVFNDTEEFVLSIDESLNEIVAWDSLTTEIVARWPSNHIGAPRWLEHSPV
EAAFVSCGIDRSIRHWT
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggggagcaaccataacaatgataacttggagcacaaactgcaagccgggaaattgttc
cgtcatgttaattctctcatagtcgctcatcttcgcgataataatctcaatcaggctgca
agtgctgtagcttcagctacaatgacaccaatgaatgttgaagctcctcccaacaagcta
ctggaattggttgcaaagggtcttgcagtggacaaagatgagacactgagaggagtttct
acagctgtaccttttgatccaattgtaactgctggatatggctcaatcccagcccctcgg
gctgcatatgttgatttcagtagcatgaacaatacaaaagggccgtcaaaaaatatccca
aagcatgagtcacgacatatttccgagcacaagaatgttgcaaggtgtgccagatttagc
cctgatggaagattccttgctactggaagtgcagacacatcaattaaattgtttgagatt
gtaaaagttaagcaaatgaagcagccagaagcaagggatggcccagtgaggcctgtagta
cgaactttttatgatcatcaacaacctataaatgacttggattttcatccacaaaataca
gtactcatatctggatcaaaagatcgcaccatcaagttctttgatttttccaaagcggta
gcaaagagagcatttagagtaattcaggatacacataatgtaaggtcggtgtcatttcat
ccttcaggggactatcttctggcaggaactgatcattcaattccccacctatatgacatt
aacactttcaaatgctacctgccactaaatttccaagatatgggtgtcaatagtgctatt
aatcaggttaggtattcatctacaggtggaatgtatgtaactgcatccaaagatggtgca
attcggttgtgggatggggtaacagctagctgtgtgcgatctatagatggtgcacatgga
gcggcagaggctacaagtgcaaatttcacgaaggatcaaaggtatattctctcttcggca
aaagactcttcggtgaagctttgggaagttggcacaggaagactggtcaaacaatatgtt
ggagctacacatacacagttgcgctgccaggctgttttcaatgatacagaagaatttgta
ttatcaattgatgaatctctaaatgagattgttgcatgggattctctgacaactgaaata
gtggctagatggccctccaaccatattggtgcaccccgttggcttgagcattccccagta
gaagctgcatttgtgtcttgtgggattgaccgatccattcggcactggacttag
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