Solanum pennellii: 107009542
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Entry
107009542 CDS
T04130
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 21-like
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
3.6.4.13
]
Organism
spen
Solanum pennellii
Pathway
spen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107009542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spen03041
]
107009542
Spliceosome [BR:
spen03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
107009542
Complex C
U5 SnRNP specific factors
107009542
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
DUF2608
P-loop_SecA
HEM4
DUF3915
Motif
Other DBs
NCBI-GeneID:
107009542
NCBI-ProteinID:
XP_015064371
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All DBs
Position
2:41413116..41419199
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AA seq
669 aa
AA seq
DB search
MTTSERSMNRPVGIKLDPSKKPVYLTKSQREQLALHDEIADQKRGHEHLQVKYNRPSSDN
HCSEKNRKRERDRNSDRDREKELNRVRLENPAEKELEAIHEQYLGSKKPKKRVITSCAKL
RSSFDWENSEDTSRDVNLLYLNPHEARPHFGRGFFGGIDRREQKKLAIKNERKIQEEIWK
KGGVEATAVEAAALKKKEQIADLYDTFDMRVDRHWTDKKLEEMTERDWRIFREDYNISYK
GSRIPRPMRNWAESALTTDLLKAVERAGYRKPSPIQMASIPLGLQQRDVIGVAETGSGKT
AAFVLPLLNYITRLPPLSEENEAEGPYAVVMAPTRELAQQIEDEIVKFAHYLGIKVVSIV
GGQSIEEQGFRIRQGCEVVIATPGRLLDCLERRYCVLNQCNYVVLDEADRMIDMGFGPQV
VGVLDAMPSSNMKPKNEDEKLDENKIYRTTYMFSATMPPAVERLARNYLRNPVVVTIGTA
GKATDLITQHVFMVKESEKMFKLQRFLDELGDKTAIVFINSRKRVDTVAKHLDKAGYRVT
TLHGGKSQEQREISLEGFRTKKYNVLVASDVAGRGIDIPDVAHVINYDIPNKLEAYTHRI
GRTGRAGKTGVATTFLTLQDTEVFYDLKQMLIQSDSPVPPELARHEASKLKPGSIPGRPP
RRNDIVFTH
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgaccacatctgagagaagcatgaaccggcccgtcggaatcaagctggatccgtccaag
aagccggtgtacctcaccaaatcacagagagagcagttagccctccatgacgagatcgcc
gatcagaaacgcggccacgaacatcttcaggttaagtacaaccgcccttcctccgataac
cactgtagcgaaaagaaccgaaaaagagagagagacaggaacagtgacagagatagagag
aaggaattaaatcgagttagattggagaatccggcagagaaggaacttgaagctattcat
gagcaatatttgggatctaagaaacccaagaaacgggtgattacatcctgtgcaaaactc
cgatcatctttcgactgggagaactctgaagacacttctcgtgacgtgaaccttctttat
ctaaaccctcacgaagcccgtccacactttggtcgcggattctttggtggaatcgatcga
agggagcagaagaagcttgccatcaagaatgagaggaagatacaggaggagatttggaag
aagggaggcgttgaggcgactgcagtagaagcagctgccttgaagaagaaggaacaaatt
gctgatttgtatgacacttttgacatgagggttgatcgccactggacagataagaagctg
gaggaaatgacagagagagattggaggatatttagggaggattacaacatatcctataag
gggtcgaggataccccgtcccatgaggaattgggctgagagcgccttaactacagatttg
cttaaggcggttgagagggctggctacaggaagccctctccgattcaaatggcttccatt
ccgcttggacttcaacaacgtgacgtgattggggttgcagaaactggttcaggtaaaact
gctgcttttgttctccctttgttgaattatatcactaggcttcctccattgagtgaagag
aatgaggcagaggggccatatgcggttgtaatggcacccacacgagaactagctcaacag
attgaggatgagatcgtcaagtttgcacactatttgggtatcaaagttgtttctattgtt
ggtgggcagtccatagaagagcaaggttttaggattaggcaaggatgtgaagttgtgatt
gcgacccctgggcgacttctcgattgcttggagagacgttattgtgttctgaaccagtgt
aattatgttgttctcgatgaggctgaccggatgattgatatgggttttggacctcaagtt
gttggtgtactggatgcaatgccttcaagtaatatgaaaccaaagaatgaggatgaaaag
cttgatgagaataagatttatcgtaccacttatatgttcagtgctaccatgccacctgcc
gtagagcggctggctagaaattacctaagaaatcctgttgtcgtgactattggcactgct
ggaaaggctactgacctcattactcagcatgtcttcatggtaaaggaatctgagaaaatg
tttaagctgcagaggtttctggatgagcttggagataagactgctattgtgttcatcaac
tctagaaagcgggttgacacggtcgccaagcatctggataaagctggctatagggtaacc
acactgcatggtgggaaatcacaggagcagagggaaatcagccttgaaggatttaggacg
aagaagtataatgtgttagttgctagtgatgttgccggtcgtggaattgatatacctgat
gtggcccatgtgattaactatgatataccaaacaaacttgaagcatacacccatcgtatt
ggacgtacaggtcgtgcaggaaagacaggtgtagccacaacgtttttgaccttgcaggat
actgaagtcttttatgatcttaagcaaatgctcatccaaagcgacagtcctgttcccccc
gaacttgctaggcacgaagcttcaaagctcaagccgggaagtattcctggcagaccacct
aggcggaacgatattgtttttactcattaa
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