Solanum pennellii: 107010152
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Entry
107010152 CDS
T04130
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH17
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
spen03036
]
107010152
Enzymes [BR:
spen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
107010152
Chromosome and associated proteins [BR:
spen03036
]
Eukaryotic type
Meiosis-specific proteins
Others
107010152
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PPR
PPR_2
PPR_1
Sec63
DEAD
PPR_3
E_motif
PPR_long
Helicase_C
ResIII
HHH_5
Cdd1
HHH
AAA_22
Motif
Other DBs
NCBI-GeneID:
107010152
NCBI-ProteinID:
XP_027770022
LinkDB
All DBs
Position
2:53343989..53356878
Genome browser
AA seq
1989 aa
AA seq
DB search
MRSVMRSLLSNSRENLKDNVHKIVSVLNDFIEKRLIVQGAVFHGHLIKKGVSSQKNIAAK
LLIMYLKSRKPNEINQMLKEFEGFNLVVHNCLITANIEWGKLHEARRLFEEMPERNEVSW
TAIISGLLRSGKVEEAILYFEKNPFQNLFSWTAVISGLVQNGLSFKAMKLFLEMLQSGVM
PNAVTFTSIIRACGELGDFNLGMCVLGLIVKIGYEHNLSVSNSLITFNLRLNDTVSARSI
FDRMQCKDVVSWTAILDMYVQMGELVEARRVFGEMPERNEVSWSTMISRYSQSGDAEEAV
NLFICMVQQGFKPNKSCFASVVSALASLQALVMGKIVHGHILKIGMERDAYIGSSLVDLY
CKCGSTKDGHVAFDTILEKNVVCWNSLVSGYSLNNQLEEAKELFGKIPQKDNISWNSLIT
GYLEYEKFDEVFEVFCEMLLSGERPSKSTFSSVLCACASLASLERGKNSHGKAIKLGFHS
DIFVDTALVDMYAKSGDVESATKIFKRMPKRNEISWTAMIQGLAENGFAEEALAVFEEFE
RTKSITPNELLILAVLFACSHCGLVDKGLHYFNSMKKLYNIQPNDRHYTCVVDMLSRSGR
LSEAEKFILDMPCEPEVQAWAALLSGCKTYRNEVIAERVAEKISELAEKHPEGYVLLSNV
YASAGRWLDVLNMRKQMKEKGLRKSGGCSWIEVRNQPHFFYSQDGSHNESMEIYGVLELM
RSEMLSHIDCIKFLLLLLLPISSTECKVIADFLAVELSVELKRFVFSNFDGTIRRNWIIM
DGYALKSVLDLPPVFRSTFSFRYFNSLQSECFPACFQSDVNMVISAPTGSGKTVLFELCI
LRLLSRFISGEGNFIHIKGSLKAIYVAPSKALIQEKLRNWNQKLGSWGINCLELTGDNEN
YKITDIQDADVILTTPEKFDSVTRYRINDGGLSFFGDIALVLIDEVHFLNDPRGAALEAI
VSRIKMLSRKPELKSSALANVRFLAVSATIPNIDDLAEWLMVPRQGVKRFGEEMRPVKLT
NKVFGYTPAKNDFLFEKRLQNFVFDILMQHSRGKSALVFCSTRKGAQEAAQQLSQTAMTF
GHSNPFIKSREQQERLREASLSCSDKQMQSYILYGVGYHNGGLSMNDRNLIEGLFLNGDI
QVLCTTNTLAHGINLPAHTVVLKSTQYFNKEKGTYMEYDRSTVLQMSGRAGRPPFDDTGM
VIIMTRKETVHLYENLLSGCELVESQLLPCITEHLTAEIVQLTVSDITGAIEWMKCSFLY
VRIRKNPEKYAVRKGLTGDRLERHMQDICVQNVNELSRYQLIWTDEDGFLLKPLEPGKLM
TKYYLKFNTMKHIMQAPGSCSIEDALQIICRAEELSWIQLRRNEKKLLNDINIDKDNRLR
FHILGDKEKRKKRVQTKEEKIFVLANDCLTGDPLVFDLSLSQDVNSICANGYRIAKCMKE
YFLYRKNYRGALSSALLTKSLYQKVWDDSPYLLKQLPGIGMVTAKALHSMGVKSFASLSD
ADPRKIEMVTGRKYPFGNHIKESLLSLPPEIEMRVEETESQRQGKSKVMVTLTRLSQPAQ
TTKRHYADMVVGVEEDNLVLFHEKIRVDEFPSPYSKTVMVPSPQQGKLTVKADLIFDEFI
GVDLHQKVVLINMVDHNFVMKYRTKQPSSFQNNDACIIEDTQDAAQASCQVSHSLTEAGW
SSDMPSFKLIDEDLDEVVLAAAVEDDECRIINENTIFDHIREKAKNLPALTSLKGTRLPS
LETLNLIRKRTREKQLLLENAVGVSEELRRTKVPCHNMVIQSAEYIDLEENRPFSNKDQI
PYSHHVSNAIYLPDERGELFFETGSVPSETIAEETIFKYNPIDSEMFHSFENVKNTEHKL
HSVANGTCIIHQPEHYSSSFGFQETTPTKVTKDAASKQIEEVEDLTLHGHTPGTSEKTDL
FMETSRKDAEERSRLLSAADAYFIRNKVGYPLRSPSFKEQEGISSVQVGEISQPNSFLGF
KSIFTFLFE
NT seq
5970 nt
NT seq
+upstream
nt +downstream
nt
atgagaagtgttatgaggtctctcttatccaactcaagagaaaacttgaaagataatgta
cacaagatcgtctctgttttgaatgacttcattgaaaagagattaatagtccaaggggcc
gtgtttcatgggcatttgataaaaaaaggtgtgtcatcacagaaaaacattgccgctaag
ttgcttattatgtatcttaaatccagaaagccaaatgaaattaatcagatgctgaaggag
tttgaggggttcaacttagttgtacataattgtcttattactgctaatattgaatgggga
aaactgcacgaagctcgtagactgttcgaggaaatgcctgagagaaatgaagtttcttgg
actgctataatttcggggttgttgaggtctggaaaagttgaagaggcaatattgtacttt
gagaaaaacccatttcagaatctgttttcgtggacagcagttatcagtgggcttgttcaa
aatgggctaagttttaaagcaatgaagctgtttctcgagatgcttcaatctggagttatg
cctaatgctgtcacttttacttccattattagagcatgtggagagttgggtgattttaat
ttaggaatgtgtgtattgggtttgattgttaagattggttatgaacataacttgtcagtt
tcaaattctttgatcacgtttaacttgagactaaatgatactgtttcagctaggtcaatt
tttgataggatgcagtgtaaagatgtagtttcgtggacagcaattcttgacatgtatgtt
cagatgggagaattggtagaagctcgtcgtgtctttggtgagatgccagaaagaaatgaa
gtttcttggagtacaatgatctcgaggtacagtcagagtggtgatgcagaagaggcagtg
aatctcttcatttgcatggtccagcaggggtttaaaccaaataagtcatgttttgctagc
gtagtcagtgcattggccagcctgcaagctttagtaatgggaaagattgttcatggacat
atattaaaaatcgggatggagagagatgcttacattggtagctcacttgttgacctgtac
tgcaaatgtggaagcaccaaggatggacatgtagcattcgacacgatcttggagaaaaat
gttgtttgttggaattcattggttagtggctatagtctcaataaccagcttgaagaagct
aaggagctatttggcaagataccccaaaaagataacatctcatggaattcactaataaca
ggttatttagagtatgaaaaatttgatgaggtttttgaagttttctgtgagatgcttctg
tctggagaacgaccaagtaaatctactttctctagtgttttatgtgcctgtgcgagctta
gcttcactagaaagggggaagaactcgcatggtaaggcaattaaacttggttttcactct
gacatttttgtcgacactgcccttgtggacatgtatgccaaatccggagatgttgaaagc
gctacgaaaatcttcaaaaggatgcccaaacgcaacgagatttcctggacagctatgatt
caagggcttgcagaaaatggctttgcagaggaagcacttgctgtatttgaagaatttgaa
aggaccaagtccattacacctaatgagctgcttattttagctgttttatttgcttgctcc
cactgtggtctagtagataaaggacttcattacttcaattcaatgaaaaagctctataat
atacagccgaacgataggcactatacctgtgtagtggacatgctgtctcgttcaggacgt
ctttctgaagcagagaagttcatcttggacatgccttgtgaaccagaagttcaagcttgg
gcagctctcttaagtggttgcaaaacatacagaaatgaggtaatagcagaaagggtggcg
gaaaagatttcggagctggctgaaaagcaccctgaaggatatgtgttgctgtcaaatgtt
tatgcttcagctggcagatggttagatgtcttaaacatgagaaaacaaatgaaggaaaaa
ggactgaggaaaagcgggggatgtagttggatagaagtgcggaaccaaccccatttcttt
tattcccaggatggttctcacaatgagtccatggaaatttacggggttttggaactaatg
aggtcagaaatgctctctcacatagattgcatcaagtttctcctccttcttcttcttcca
atttcttcaacagagtgcaaagtgatcgctgattttctcgccgtagaattgtcagttgag
ttgaaacgctttgtcttctccaattttgacggtacaatacgaagaaattggataatcatg
gatggttatgcgcttaagtccgtgttggacttgcctcctgttttccgttcaactttcagt
ttcagatattttaattcgctgcagagtgaatgctttcctgcttgtttccagtcagatgtg
aacatggtaatttcagcgccaacaggaagtgggaaaacagtgctttttgaactatgcatt
ttgaggctcctctcaaggtttatctcaggagagggaaattttattcacataaaggggtct
ctgaaggctatatatgttgcaccctcaaaagcactgatacaagagaagcttcgtaattgg
aaccagaagcttggttcatgggggataaattgcttggaactgacaggggacaatgagaac
tacaaaatcacagatatacaggacgctgatgtaattcttaccactcctgagaagtttgat
tctgtgactcgttatcgcataaatgatggaggtctgagtttttttggtgatattgcattg
gtgctaattgatgaagtccatttcttgaatgatcctcgtggagcagctttggaggcaatt
gtcagtagaattaaaatgctttctcgcaaacctgaactgaaatcaagtgctctagctaat
gtccgttttttagctgtttctgcaaccattcccaacattgatgaccttgcagaatggctc
atggtccccaggcaaggagtaaaaaggtttggggaagaaatgagacccgtgaagttgact
aacaaagtttttggatacactccagcaaagaatgactttctatttgaaaagcgcctacag
aactttgtctttgatatcctcatgcaacattctagaggaaagtctgctctagttttttgc
tcaaccagaaaaggagcacaagaggcagcacaacagctctctcagacagcaatgaccttt
ggtcattcaaatcctttcatcaaaagcagagagcaacaagaaaggttgagggaagcttca
ctatcatgtagtgacaaacaaatgcagtcttatattctttatggtgttggttatcacaat
ggtggactttccatgaacgaccgcaacctcattgaaggcctctttctgaatggtgatatt
caagtgctgtgcactacaaatactcttgcccatggaattaatctaccagcacataccgtt
gtgcttaaatcaactcagtacttcaataaggaaaaagggacttacatggaatatgacaga
tcaaccgtcctgcagatgtcaggaagagcaggtcgaccaccatttgatgacacgggaatg
gtcataatcatgaccagaaaagaaactgttcacttgtacgagaatttattaagtggatgc
gaattggtggagtcgcaattgcttccatgtattacagagcacctaacagcagagattgtt
caactgaccgtgtcagatataacaggagcaattgaatggatgaaatgctcatttttgtat
gttagaataagaaagaatccagagaaatatgcagtaaggaaggggctaactggcgaccgt
ttagagaggcatatgcaagatatttgtgttcagaatgtaaatgagttgtcaaggtatcaa
ttgatttggacagatgaagatggtttcctcttaaagcctcttgaacctggaaagttgatg
acgaaatattatctgaaattcaatacgatgaagcacatcatgcaagcccctggaagctgt
agcatagaggatgcacttcaaatcatttgccgtgctgaggaacttagctggatacaactg
aggcgcaatgagaagaagctcctgaatgacataaacattgacaaagacaataggctccgg
tttcacatccttggggataaagagaagagaaaaaagagggtccaaaccaaagaagagaag
atatttgttttggcaaacgactgcttaacgggggaccctttggtctttgatttatccctt
agccaggacgtgaactctatatgtgcaaatggctatagaattgcaaagtgcatgaaagag
tatttcctatacaggaagaactatcgaggagctttgagttcagcacttctaaccaaatcc
ttgtatcaaaaggtctgggatgatagtccatacttgctgaaacaattacctggtattgga
atggtgacagcaaaggcacttcattcaatgggagtaaaatcatttgcctcactctccgat
gcagatccaaggaaaatagagatggtcactggaagaaaatatccttttgggaatcatata
aaagagtcattactatcgctacccccagaaattgagatgagggttgaggaaactgagagc
caaaggcaagggaagtccaaggttatggtaacactgactaggttgtcacaacctgctcaa
acaactaaacgacattatgctgatatggtggttggcgttgaagaagataatctggtactg
tttcatgagaaaattagggtggatgaatttcctagcccttatagcaagacagttatggtg
ccgagtcctcagcaagggaagctgactgttaaagcagatctgatatttgatgaatttatt
ggtgttgatctgcatcaaaaggttgtattgataaacatggttgaccataattttgtgatg
aagtacagaaccaagcaaccctcttccttccagaacaatgatgcctgcatcatagaggac
acacaagatgcagctcaagcatcatgccaagtgtctcacagtttaactgaagctggttgg
agctcagacatgcccagtttcaagctaatagatgaagatctagacgaagtggtacttgct
gctgcggttgaagatgatgaatgcagaatcataaacgaaaatacaatatttgaccatata
cgtgaaaaggctaaaaacctccctgctttgacctcactgaaaggtacacgtttaccatca
ttagagactttgaatctcatcagaaagcgcactcgcgagaagcagcttcttcttgagaat
gctgtaggagtatctgaagaattgagaagaaccaaagtcccatgtcacaacatggtcatt
caatctgcagaatacattgatctagaagaaaatagaccattttctaacaaagatcagata
ccatatagccatcacgtctctaatgccatttacctgcctgatgagagaggtgagcttttc
tttgaaactgggagtgttccatctgaaacaattgctgaagaaacgatattcaaatataac
cctatagattctgagatgttccacagctttgagaatgtgaagaacacagaacacaagtta
cacagtgtggccaatggaacctgcataattcaccaacctgagcattattcttccagcttt
gggtttcaagagacaactccaacaaaagttacgaaagatgcagcaagtaaacaaattgaa
gaggttgaggatctaactcttcatggacacacccctggtacaagtgaaaaaactgatctt
tttatggaaacctcaagaaaagatgcagaggaaagatcaagattgttgtcagctgcagat
gcttactttataaggaataaagttggatatccactacgttctccaagtttcaaggaacaa
gagggcatttcttcagtacaagttggagaaatcagccaacctaattcctttcttggattt
aaaagcatttttacatttctatttgaatga
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integrated database retrieval system
