Solanum pennellii: 107011069
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Entry
107011069 CDS
T04130
Name
(RefSeq) ATP-dependent RNA helicase-like protein DB10
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
3.6.4.13
]
Organism
spen
Solanum pennellii
Pathway
spen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107011069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spen03041
]
107011069
03009 Ribosome biogenesis [BR:
spen03009
]
107011069
Spliceosome [BR:
spen03041
]
Complex A
U1 snRNP components
U1 related factors
107011069
Complex B
107011069
Ribosome biogenesis [BR:
spen03009
]
Eukaryotic type
Pre-60S particles
Helicases
107011069
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
107011069
NCBI-ProteinID:
XP_015065877
LinkDB
All DBs
Position
2:complement(53434940..53445090)
Genome browser
AA seq
706 aa
AA seq
DB search
MAATATASSTGPRYAPEDPTLPKPWKGLVDGKTGYLYFWNPETNTTQYEKPVATPHVGAA
QHKSSVSVSSSVERPSQSQCSDRGDNRGTNGALSKLSSGEGIQTARANELSRDETSAPKG
YSASAAASDISPDAYRRQHEISVTGGDVPPPFTSFEATGFPSEILREIHQAGFPAPSPIQ
AQSWPIALQGRDIVAVAKTGSGKTLGFLLPGFILLKQRRSNPQSGPTILVLSPTRELATQ
IQDEAVKFGRSSKISCTCLYGGAPKGPQLRDLDRGVDIVVATPGRLNDILEMRRVRLDQV
SYLVLDEADRMLDMGFEPQIRKIVKEVPTRRQTLMYTATWPKEVRRIAADLLVNPVQVNI
GNVDELVANKSITQYIEVLSYMDKQKRLDQILRSQEPGSKIIIFCSTKKMCDQLARNLTH
PFGAAAIHGDKSQGERDHVLSQFRTGKSPVLVATDVAARGLDVKDIRVVVNYDFPTGIED
YVHRIGRTGRAGATGEAYTFFVDQDAKHASDLIKVLEGANQQVPTELRDMASRGGGMGRA
RRQWDSGSGGREGGRGGGYDAGYGGRDGARGGWEAPSSERSGRVYDSDSRDRDRHGHGSD
APASFHGRSFHETMMQGSQRRDRSRSRSPNRGSGWGDRKGRERSRSRSAERSERTRIQVP
VGGSFHEAMMGFSRSSAGDSRKDWEKERSQGDGKSGDGPRANNWEE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggctgctactgcaactgcatcttctactggtccacgttatgcaccagaggatcccacc
cttcccaaaccttggaaaggcctagttgatggtaagactggatatctctatttttggaat
ccagagaccaatactacccaatacgagaagcctgttgctactcctcatgtgggtgctgca
caacataaatcctctgtatctgtaagttcatcagttgagaggccttctcaaagtcaatgt
tctgaccgtggtgacaacagaggtaccaatggtgccttgagcaaactttcctctggagag
ggtattcagactgcaagagcaaatgagctttcccgcgatgaaacatctgcgcctaaaggt
tatagtgcttcagctgccgcgagtgacatatctccagatgcctatcgccgtcagcatgaa
atttctgtcacaggaggtgatgtgcccccacctttcacatcgtttgaagctactgggttt
ccttcagagattttgagggagatacatcaagctgggtttcctgctccttccccaatacag
gcacagtcctggcccattgcacttcagggccgtgacatagtagctgttgcaaagactggg
tctggaaaaactctaggtttcttgcttcctggctttattcttctaaagcaacgtcggagt
aatcctcaatcaggccctactattttggttctctcgccaacaagagaattagccacacag
atacaagatgaagctgtgaagtttggtagatcttcaaagatttcttgcacgtgtttatat
ggaggcgccccaaaaggccctcagctacgagatctggacaggggagttgatattgttgtt
gctacccctggtcgattgaatgatattttggagatgagaagagttaggctggatcaagtt
tcttacttggtgttagatgaagcggatcgtatgctggacatgggattcgaacctcagata
aggaagattgtgaaggaggtgcctacgcgacggcagacactgatgtacacagcaacatgg
cctaaggaggtccgtagaattgcagctgatctattggttaatccagttcaggttaacatt
gggaatgttgatgagcttgttgcgaacaagtctattacacagtacattgaagtcttgtca
tatatggataaacaaaagcgtctagaccagatcttgagatcccaagagcctggatcaaaa
atcattatcttctgttcaactaagaaaatgtgtgaccaacttgctcgcaatcttacacac
ccatttggagctgctgctattcatggtgataaatctcagggtgagagggatcatgtactg
agccagttccgcactggcaagtcccccgttcttgttgcaactgatgttgctgctcggggc
ttggatgtcaaagatatcagggtggtggtcaactatgattttccaactggaatagaggac
tatgtccacagaataggaagaactggtcgggctggtgcgactggtgaggcctacacattt
tttgttgaccaggatgctaaacatgcttcagatcttattaaagttttagaaggagcaaat
cagcaagtgcctactgaactacgtgatatggcttctcgaggaggtggtatggggagggct
aggcgtcaatgggattctggctcaggtggacgggaaggaggacgtgggggaggttatgat
gctggctatggtggacgagatggagcaaggggtggttgggaagccccttcatcagaaaga
agtggacgtgtttatgactcggattcacgtgacagagatagacatggtcatggctctgat
gctccagctagtttccatggtcgaagcttccatgaaactatgatgcagggttcacagaga
cgtgatagaagtcggagcagaagccctaatagaggttctggatggggtgacagaaaaggc
agggagcgaagtcgtagccgtagtgctgaaagatctgagcggactcgtattcaagttcca
gtaggtggcagtttccatgaagccatgatgggcttcagtagatcatcagctggtgattcc
cgaaaggactgggaaaaagaaagatcccaaggtgatgggaaatctggcgatggaccccgt
gctaacaattgggaggagtaa
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