Solanum pennellii: 107017733
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Entry
107017733 CDS
T04130
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107017733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107017733
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
107017733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_16
TPR_14
TPR_17
TPR_8
TPR_12
TPR_7
TPR_19
TPR_9
TPR_CcmH_CycH
TPR_6
ARM_TT21_C
TPR_15
UNC80_C
TPR_10
TPR_NPHP3
Y2_Tnp
DUF6584
Motif
Other DBs
NCBI-GeneID:
107017733
NCBI-ProteinID:
XP_015073462
UniProt:
A0ABM1GMY7
LinkDB
All DBs
Position
4:77154967..77172445
Genome browser
AA seq
1179 aa
AA seq
DB search
MSVEDDAAIRRLEEAVVSQPGDPSLHFDLGVLLWDKGGELPDIKEKAAQHFLIAAKLNPQ
NPAAFTYLGHYYARVAVDSQRAIKCYQRALSLNPDDSIAGEAVCDILDATGKETLEIAVC
REASLKSPRAFWALCRLGYLLVNQNKWSEAVQSLQQAIRGYPTCADLWEALGLSYQQMGM
FTAAVKSYGRAIELEESRVFALVESGNVYLMLGSFRKGIEQFRQALQISPLNLSAHHGLA
SALLSLAKESIDSGAFKWGASLLEEASKVALASTSIVGNISCAWKLLGDIQLTYAKCFPW
MDEGLGSGADENSFSSSILSWKRICCLAVRSACCSYQRALHLSPWQANVYTDVAIASDLL
FSLKENCKDDMSPWFVSEKMCLGGLLLEGCNSEFWVALGCLSDHSALKQHAFIRALQLDV
SLAVAWAYLGKLYRQEGESQLAQLAFDRARSIDPSLSLPWSGMSADATARNLKPDEAYEC
CLRAVQIFPLAEFQTGLVKLALQSGYLRSPEAFGAIQQALQRAPQYPESHNLKGLVCEAR
NDYESAVASYRLARLAARVFARKLSKSYLADISINLTRSLCMAGNADDAIEECKYLESKG
LLDVESLQLYALSYWKLGKYDLALSMAKRLASSALPTEHPLAAASVSFICRLVYHISGKE
LAIRNILQLPKRAFQSSRVRLVASAIHALDESHQLDSVVSCVRESLSSNKEIAALDFLAT
LGLLVKHGSKDCLEVQKGVNYLRRALHTSPNSHLIRTLLGYLLVSSREWKDVHISARCFR
VDPSEHQKKEGVKSSVQIFGAGAVACCNVGSGKKTLAMSICRENSTLECKTIKLLQKCVH
QEPWDHHSYYLLVLNYLQKAREKKFPRNLCVVLERLINVALRSELYAKDDISSQYQKFQL
LLCAAEVSLHCGNNFKCIMHAKSALEMQLPDNYLFFAHLLLCRAYAVEDNYSGLHEEYIR
CLQLKTDNHIGWICLKFLESRYKLQSDSSSLALAFQECGKEIKTSWNMWIAMYNLVQGLT
AAWNGEFIDAEESIAQACLLAGGESCLFLSHGVICMEIARQQSDSDFLSLAIRSLKKAKD
SSSTPLPFVSLLLAQAEASFGSESKWEKNLIEEWSSWQPEIRPAELFFQMHLLARRLTEG
SVAMSNLEPSTSPLRWILQAIHINPSCLRYWRALLKFME
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtagaagacgatgctgctataagacggttagaagaagcggttgtctcccagccc
ggcgacccttctctccattttgatctcggagtcttattatgggacaagggaggagaattg
ccagatattaaggagaaagccgcacaacattttctcatagcagccaagctcaacccacaa
aaccctgctgctttcacatatttgggacattactatgctcgagtagctgtcgactctcag
agggctatcaagtgttatcagagagcccttagccttaatccagacgattcaattgctggg
gaagcagtttgtgatatactggacgcaactggaaaagagaccttggagatagctgtatgc
cgtgaagcttcactcaagtcgcccagggccttttgggctttatgcagattgggttacctt
ctggtcaaccaaaacaagtggtccgaagcagtgcagagtcttcagcaggccatcagaggc
tatcccacatgtgctgatttgtgggaggccctgggtctatcctaccagcaaatgggcatg
tttacagccgctgttaagtcctatggaagagctattgaattggaggaatcacgagtattt
gcactggtagaaagtggaaatgtctatttgatgcttggttcgtttcggaagggaatagag
cagtttcgacaagctttacaaatctcacctctgaatttgtccgcgcatcatgggcttgcc
tctgcactccttagtttggcaaaggaatccattgattctggtgcctttaaatggggagct
tcactcttagaggaagcttcaaaggtggctctagcaagtacttccattgttggcaatata
tcttgtgcttggaagctgcttggagatattcagctcacatatgcaaaatgttttccatgg
atggatgaaggattgggctcaggagctgacgaaaattcattcagcagttcgatcttgtca
tggaagagaatctgctgtttagcagtcagatctgcttgttgctcctaccagcgggcattg
catttgtccccttggcaagctaatgtgtatactgatgttgccattgcatctgatcttctt
ttctcgttaaaggagaactgtaaagatgacatgagcccttggtttgtgtctgaaaagatg
tgccttggaggcttattgcttgaaggttgcaatagcgagttttgggtagccttagggtgt
ttatctgatcattctgcattaaagcaacatgctttcatacgagcactgcagttggatgtt
tctcttgctgttgcatgggcatatcttggaaagctttataggcaggaaggggaaagtcaa
ttggctcagctagcatttgatcgtgcaagaagtattgatccttcactttcattgccatgg
tcaggcatgtcggctgatgctactgcaaggaatctgaaaccagacgaggcttatgagtgc
tgtctgcgggcggttcagatctttccacttgcagaattccaaacaggtctagttaagctt
gctctgcagtcaggttatctgcgatctccagaggcatttggagccatccagcaggctttg
cagcgcgcacctcagtatcctgaatctcacaatctgaaagggctagtttgtgaggcacgg
aatgattatgaaagtgctgttgcctcatataggctggcacgccttgctgccagagttttt
gcaagaaagctttcaaaatcatatcttgcagatatatcgattaatttgaccaggtcactt
tgtatggcaggaaatgctgatgatgctattgaagaatgtaagtatttggaaagcaaaggt
cttctggatgtagaaagtttgcagctttatgcgctttcttattggaaacttggaaaatat
gaccttgctctttctatggcaaagagactggcctcatctgctttaccaacggagcatcca
ttggctgctgcctccgtcagtttcatctgtagattagtgtatcatatttcagggaaggaa
ttagctataagaaacatattacaactgccaaaaagagccttccagagttcaagagttagg
cttgtagcatctgctattcatgcattagatgaaagtcatcagcttgactcagttgtttca
tgtgttcgtgagtctctttcatctaacaaagagattgctgcgctggatttcctggccaca
ctgggcttactagtcaaacatggatctaaggactgcctagaagttcagaagggggtcaat
tatctaagaagagctcttcatacttctccaaacagtcatttgataaggacccttcttggc
tatctgttagtatccagcagggaatggaaagatgttcacatttcagctcgatgcttccga
gtggacccttctgaacatcagaaaaaggaaggtgttaaatccagtgttcagatttttggt
gctggagcagttgcttgctgtaatgtggggagcggcaagaagacactagcaatgtccatc
tgtagagaaaattcaacactggagtgcaaaacaatcaagctgctgcagaagtgtgtccat
caggagccttgggaccatcattcatattacctccttgtactaaattatcttcagaaggcg
cgggagaagaaatttcctcgtaacctgtgtgttgttcttgagaggttgataaatgtggct
cttcgaagtgagctttatgcaaaagatgatatttcttcccagtaccaaaagttccagctt
ctgctttgtgccgcggaggttagtttgcattgtgggaataatttcaagtgcattatgcat
gcaaaaagtgctctagagatgcagcttccagataactacctcttctttgcacacttgcta
ctatgtcgtgcctatgctgtagaagataattattcaggacttcatgaagaatacataagg
tgcttgcagctaaaaactgataatcatattggttggatttgtcttaagtttcttgaaagt
cgatacaagctgcagtcagattccagttcactagccttggcctttcaagagtgtggcaaa
gaaataaaaacttcgtggaacatgtggattgctatgtataatttggttcaaggtctaact
gcagcttggaatggggaatttattgatgcagaagagtctattgcgcaagcttgcttgttg
gcgggtggcgagagttgcctttttcttagccatggtgttatttgcatggagattgccagg
cagcagtccgattcagattttttatcacttgctattagaagtctgaagaaagcaaaagac
agttcttcaacgccactaccctttgtctcactgctactggcacaagcagaagctagcttc
ggctctgaatcgaagtgggaaaagaacctcattgaggaatggtcatcttggcagccagag
attaggcctgctgaactgtttttccagatgcatttgcttgctagacggctgacggaaggt
tccgtagctatgtccaatctggagccatctacaagtcctctaagatggatacttcaagct
atccatatcaatccatcttgtttgagatattggagagctttgctgaaatttatggagtaa
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