KEGG   Solanum pennellii: 107028862
Entry
107028862         CDS       T04130                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
spen  Solanum pennellii
Pathway
spen03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:spen00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107028862
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:spen03021]
    107028862
Enzymes [BR:spen01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     107028862
Transcription machinery [BR:spen03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     107028862
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_1 DUF2225
Other DBs
NCBI-GeneID: 107028862
NCBI-ProteinID: XP_015085574
LinkDB
Position
8:complement(68071538..68085192)
AA seq 1446 aa
MEHDRNIEQQVPDGILRGINFSILSETDAAKLSAKVIGAVNEVTDPALGFPNPIFQCTTC
GANDGKKCEGHFGLVNFPYTILNPYFVSEVAQILKKICPGCKSVRRDKVKVSDRTSACKY
CDGVLRGYPPTKFKVSPKDMFGRTAIIAEVNENLLKKVQKTTGVSLASDYWDFIPYDAQQ
EASVNSSNYKRVLSHAQVYSILKDIDPGFLEGLLRRKNSIFLKSCLLTPNSHRVTEFGQH
MIFDESNRLYRKLIDFRGTANDLSMCVLDRIKVSKIRADRSVINDPNAPATGLKYVKELV
LAKRTNHAFRMVVVGDPNIELGEIGIPCHVAENLHMAETLSLRNWERMTDLCDLMILQRG
GILVRRNGVLVRISVMDGLQKGDIIHRPLVDGDVVMINRPPSIHQHSLIALSVRILPINS
VLSINPLVCSPFRGDFDGDCLHGYIPQSIDSTIELSELVALKQQLLDGQNGQNLLSLSHD
SLTAAHLILEPGVFLDRFQMQQLQMFCPRQLGMTAIVKAPPGNICYWTGKQLFSLLLPSD
LEYVFPSNGVCISEGEIVTSSGGSSWLRDASDNLFYSLVKHNGGDTLDLLYAAQTVLCEW
LSMRGLSVSLSDLYISADSYSRENMIDEVCSGLQEAERLSYIQLLMIKYNKDFLSGNLEE
SKNSLGFDFEFMSIMQQKSASLSQASASAFKKVFRDIQNLVYNYASNDNSLLAMLKAGSK
GNLLKLVQHSMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIPS
AVVKNSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYVGYDGTVRNA
YGNQIVQFSYYEAEQIASTKVTGEALESHNHAIGGHPVGSLAACAISEAAYSALDQPVSA
LESSPLLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSEV
VSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSVLDALNMRYRAATTKAGND
LPNLHITCKDCSVAEAQKEKSEICITVSVVETSKDPSSLLDTLRDVVIPFLLDTVIKGFS
AFKKVDILWKELPSPSKSSRGSTGELYLQVFMSESCDRIKFWNALVDSCLQIRDLIDWER
SYPDDVHDLTVAYGIDLAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTATGEFVPLSA
KGLTLQRKAAGVVSPFMQACFTNPGDSFVRAAKMGLSDDLQGSLESLAWGKTPSIGTGSS
FDIMYSGKGYELAEQINVYTLLRNLVTVDTPNVKVTLGKDGGMDGTSLARRLDRLDDLDK
KSCKSELSFTKLRSYFSFNDIKKLSQSLKQMLSKYDIGRELNEADKCLAMMALQFHPRRN
EKIGKGAPKEIKIGYHQEYEGSRCFMVVRSDDTVEDFSYRKCMQHALELIAPQKAKTSRW
LNGASA
NT seq 4341 nt   +upstreamnt  +downstreamnt
atggagcatgatcggaatattgagcagcaagtgccagatggtattctgaggggcataaat
ttcagtatcttgtcagagactgatgcagccaaattatcagctaaggtaattggagcagtt
aatgaagtaacagatcccgcattggggtttccaaatccaatcttccagtgtacaacatgt
ggtgcaaacgatgggaaaaaatgtgaaggtcattttggattagtaaattttccatataca
attctgaatccgtatttcgtatcggaggttgctcagatcttgaagaaaatatgtccagga
tgtaaatctgtgcgtcgtgataaggtcaaggtttctgataggacatctgcctgcaaatac
tgtgatggagttttaagaggttatccgccaacaaaatttaaagtatctcctaaagacatg
tttgggaggactgccattatcgcagaagtgaatgagaatttgttaaagaaggttcagaaa
actacgggagtaagtttggcttctgactattgggatttcatcccatatgatgcacaacaa
gaagcaagtgtaaattcgtcaaattacaaaagagttttatcacatgctcaggtatacagc
attctgaaagatattgatccagggtttcttgaaggacttctcagaaggaagaattcaatc
ttccttaaaagctgccttttgactcctaatagtcatcgtgtcacagaatttgggcagcac
atgatatttgatgaaagcaataggctttacagaaagttgattgactttagagggacagca
aatgacttgagcatgtgcgttttagatagaattaaagtttcaaagatacgtgcagataga
tcggtaatcaatgatcctaatgcccctgctactggtttaaagtatgtgaaagaattggtt
ctagcaaaacgcactaatcatgctttccgcatggttgtggttggtgatcctaacatagag
ctaggtgaaattggtattccatgtcatgttgcagagaatctccacatggcagaaactctc
agtttacggaattgggaaaggatgactgatctctgtgatcttatgattcttcagagggga
gggattcttgtccgtagaaatggtgtcttagttcgtattagtgtaatggacgggttgcag
aaaggggatattatacatagaccccttgtcgatggagatgttgtgatgataaatcgacct
ccgtctattcatcaacactcgctaattgctctgtctgttaggattcttcctataaattct
gttctttcaatcaatccccttgtctgttctccattccgtggggatttcgatggtgattgc
cttcatggttatattccccaatcaatcgattctacgattgagcttagtgagcttgttgct
ctgaaacaacagttgcttgacggacagaatggtcaaaatcttctttcattaagtcatgat
agcttgactgctgctcatttaattttggaacctggagttttcttggaccgtttccagatg
cagcagctacaaatgttttgtccacgtcaattgggaatgactgctatcgtaaaagcacca
ccaggaaacatctgttattggactggcaaacagttattcagcttgcttttgccatcagac
cttgaatatgtttttccatcaaatggtgtctgtattagtgagggggaaattgtgacttct
tctggtgggtcttcttggctgcgtgatgccagtgataatcttttttatagtcttgttaag
cacaatggaggtgatactcttgacctcctttatgctgcacaaacagttctttgtgagtgg
ttgtcaatgagaggccttagtgtttcattgtccgatctttacatatctgctgattcatat
tcccgcgaaaatatgattgatgaagtctgttctggtttgcaagaggcagaacggctgtct
tacatccagctgctgatgataaagtataataaggatttcctttctggaaacttagaagaa
agcaagaactccttgggttttgattttgagtttatgtccatcatgcagcagaaatcagct
tcccttagtcaagcttctgctagtgctttcaagaaagttttccgggatatccagaatttg
gtatataattatgcaagcaacgacaattcgttactggctatgttaaaagctgggagtaag
ggcaacctgctaaaactggtccaacacagcatgtgtctgggtttgcagcagtctttggtt
ccagtgtcatttagaatgccccgccaactttcttgtgatgcatggaacaatcataaatca
catcttgttattgagaaaccgcataaggttcctgaatgtcctggttcttacatcccgtct
gctgtggtcaaaaattcatttcttgcgggtttgaatcctctagagtgttttgtgcattca
ttaaccacccgtgatagttcttttagtggacatgctgatgtttctggcactttgaaccgc
aaacttatgtttttcatgcgtgatctgtatgttggatatgacggaacagtgagaaatgct
tatgggaatcaaattgtgcagttctcttactacgaagcagagcaaattgcttccactaag
gtcactggtgaagccctagaaagtcataaccatgcaattggtggtcatcctgttggttca
ttggcagcctgtgccatttcagaagctgcatacagtgctttggatcaacctgtcagtgca
cttgagtcatcacctttactaaacctgaagaaaattttagaatctggagcggggagtcgt
actggagagaaaactgcatcaatgtttctttcaaaaagacttggcagatgggctcatggt
tttgaatatggagctttagaggtcaagggtcatctggaaaggcttcttctttccgaagtt
gtttccacagtaatgatatgcttctcccccgaaacacgtaaaagcactcacaattgtccc
tgggtctgtcattttcatattgataaggaaaatgttaagacgagaaggctgaagctgaga
tcagttttagatgctcttaatatgagatatagagccgcaacaacgaaagccgggaatgat
cttccaaatctgcatataacgtgcaaggattgttcagttgctgaagcgcaaaaagagaaa
tccgaaatttgcatcactgtttctgtggttgagacctcaaaagatccttcttcactgctg
gatacgcttcgtgatgtggtgattccattccttcttgacacggtgataaaaggtttctcc
gcatttaaaaaggttgatatcttatggaaagagttgccaagtccatcaaaatcttccaga
ggctctacaggggagctatatttgcaggtcttcatgtcagaaagttgtgacagaatcaaa
ttctggaatgcgcttgtggatagttgcctccagataagggatttgattgattgggaacgc
agttatcctgatgatgtccatgatctgactgtagcctatggaattgatttagcatgggag
tactttctatgtaaactacattcagctgtctctgaaactggcaagaaaattcttcccgaa
cacttggtacttgcagcagatagtctcacagctacaggagaatttgttcccttgagtgcc
aaagggctgacactgcaaagaaaggctgctggtgttgtttcaccatttatgcaagcgtgc
tttacgaatccaggggactcgtttgttagggctgccaagatgggattaagtgacgatctt
caagggagtcttgaatcattggcatggggaaagactccttccatagggactggttcttca
ttcgacattatgtactctggaaagggatatgagctggctgaacagataaatgtgtatact
ctgctgcggaaccttgtcacagtggatacgccaaatgtgaaggtcactcttggtaaagac
ggtggaatggatggaacgtctctcgcacgacgtcttgataggcttgatgatctcgataaa
aagagttgtaaaagcgagttgtcatttacaaagctgagaagttacttttcattcaacgac
ataaaaaagctctctcagtcattgaagcaaatgttgtccaaatatgatatcggtcgcgag
ttgaatgaagcagacaagtgcctagcaatgatggcattacaatttcatcctcgacggaat
gagaagattggaaaaggagcaccaaaggaaattaagattggttaccaccaagagtatgaa
ggctcccgctgctttatggtggttcgttcagatgacacagttgaagacttctcatatcgc
aagtgtatgcaacatgctctggaactgattgctcctcagaaggcaaaaacctctagatgg
ttgaatggagcatcagcctaa

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