Solanum pennellii: 107031205
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Entry
107031205 CDS
T04130
Name
(RefSeq) transcription factor bHLH140 isoform X2
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
spen
Solanum pennellii
Pathway
spen03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
107031205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spen03400
]
107031205
Enzymes [BR:
spen01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
107031205
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
107031205
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
107031205
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
107031205
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
107031205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
AAA_33
zf-C2HE
Macro
HIT
AAA_18
Zeta_toxin
CPT
AAA_29
AAA
AAA_17
nSTAND3
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
107031205
NCBI-ProteinID:
XP_015087976
LinkDB
All DBs
Position
9:62679..66797
Genome browser
AA seq
725 aa
AA seq
DB search
MEAMEIDSAGKDEEGKAKPVMVILIGAPGSGKSTFCDLVMRVSTRPWVRICQDTIGNGKA
GTKKQCLTGAASALKEGKSVFIDRCNLDREQRAEFVKLVGPEVEKHAVALDLPAKLCISR
SVKRTEHEGNLQGGKAAAVVNRMLQKKELPKLNEGYDRITVCQDEKDVQGAINTYTSLGP
SDKLPPGFFGQKTSDAKVQLGIMKFLKKKDPPGCSDAVMNVSRDNTLSHATKEKDSNQVL
ESCEEPKMASVGSSISLENAPTLAFPSISTADFHFNLEKASDIIVEKVEEYVNKLGNARL
VLVDLSQHSKILSLVRDKAAEKNIDSKKFFTFVGNITKLYSEGGLHCNVIANATNWRLKP
GGGGVNAAIFSAAGPILETATKAKAGSLSSGKAIVVPLPSSSPLFSGEGVTHVIHVLGPN
MNPQRPNCLDNDYIKGCKILREAYSSLFDGFASIVRTQEESCKDKFDKEFKGEVQLEQGS
RSGDQKAKREAVCETDMNKKFKSFVKELGPNVGSSVDGKTGGQSRKAWGSWVQALYDTAM
HPERHKNIIEMSDDVVVLNDLYPKAQKHLLVLARVEGLDSLEDVKKEHLTLLKTMHSVGL
KWAEKLLCENNSLTFRLGYHSVPSMRQLHLHVISQDFNSNHLKNKKHWNSFNSPFFRDSV
DVIDEVSQNGKAILKDENILSMELRCHRCRSAHPNIPRLKAHIGSCRAPFPASLLQNGRL
VFSER
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggaagcaatggagattgattctgcaggcaaggatgaagaaggaaaagcaaaacctgta
atggtaatactgataggagctccaggaagtggtaagtccactttttgtgaccttgttatg
cgagtctctaccaggccttgggttcgtatttgccaggataccattgggaatggtaaggct
gggacaaagaagcaatgtttaactggagcagctagtgcgctgaaggaaggaaaaagtgta
tttatagatagatgcaacttagatagagaacagagagccgagtttgtgaagcttgttggt
ccagaagtggagaaacacgctgtggcacttgatcttccagctaagctttgtatttctcgg
tcggttaagaggacagagcatgagggaaatttgcaaggtgggaaagctgctgcagttgtg
aataggatgctgcaaaagaaagagttgcctaagctgaatgaagggtatgatagaattaca
gtttgccaagatgaaaaagatgttcaaggtgctatcaatacgtacacttcacttggtcca
tcagataaacttccaccaggctttttcggccagaaaacctcagatgccaaagtccaactt
ggtataatgaagtttctcaaaaaaaaggatcctcctggatgttctgatgctgtgatgaat
gtctctcgggacaatactctttctcatgccaccaaggagaaggactccaaccaagtacta
gaaagctgtgaagaaccgaaaatggcatctgttggcagtagcatttctttagaaaatgcc
cccacacttgcatttccatctatttctacagcagatttccatttcaatcttgaaaaagca
tcagatataatagttgaaaaggtcgaggaatatgtaaataaacttgggaatgctaggctt
gtcttggtggatttatctcagcattcaaaaatattgtcccttgtcagggataaagctgca
gagaagaacatcgactccaaaaagttctttacgtttgtcgggaatataactaaactgtac
tcagaaggaggtttgcactgcaacgtgattgctaatgccactaactggcgactaaaacca
ggaggtggaggcgtaaatgctgctatatttagtgctgctggtcccattcttgaaactgca
accaaagctaaagctggatctcttagttctggaaaagctattgttgtccctcttccttcc
tcttctcccttgtttagtggggaaggagttactcatgtcatacatgtacttggaccaaat
atgaatccccaaagaccaaactgtctcgacaatgactacatcaagggctgtaaaatactc
cgagaagcttactcatccctctttgatggttttgcatctatagttaggactcaagaagag
tcatgtaaggataagttcgacaaagaatttaaaggagaagttcaactagagcaaggttct
agaagtggtgatcagaaagccaagcgtgaagctgtctgtgaaacagacatgaacaagaag
tttaaaagctttgtgaaagaactcggccccaatgttggaagttctgttgatggcaaaact
ggtggacagtcaagaaaggcatggggctcatgggttcaggctctctatgacactgcaatg
catcctgagaggcataagaatataatagagatgtcagatgatgttgtagtactgaatgat
ctttatccaaaggctcagaaacacctcttagtgttggcacgtgttgaaggtcttgacagt
cttgaagatgttaagaaggagcacctcactttattaaagacaatgcacagtgttggcttg
aagtgggcagaaaaacttctatgtgaaaacaattcattgacatttcgccttggatatcat
tcggttccttcaatgcgtcaattgcatcttcatgtgataagccaagacttcaattccaat
catcttaagaataagaagcattggaactcattcaactcccccttcttccgggattcggtt
gatgtaatagatgaagttagtcaaaatgggaaggccattttgaaggacgagaatatcctt
tctatggagctaaggtgtcatcgatgtcgaagtgcacatccaaatattcctcgtcttaaa
gcacatatcggttcttgtcgagcaccctttcctgcttctttgctgcaaaatggtcgttta
gttttctcagaaaggtaa
DBGET
integrated database retrieval system
