Streptococcus pyogenes Manfredo (serotype M5): SpyM50082
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Entry
SpyM50082 CDS
T00497
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spf
Streptococcus pyogenes Manfredo (serotype M5)
Pathway
spf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SpyM50082 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spf03021
]
SpyM50082 (rpoC)
03400 DNA repair and recombination proteins [BR:
spf03400
]
SpyM50082 (rpoC)
Enzymes [BR:
spf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SpyM50082 (rpoC)
Transcription machinery [BR:
spf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SpyM50082 (rpoC)
DNA repair and recombination proteins [BR:
spf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SpyM50082 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
CAM29424
UniProt:
A2RC52
LinkDB
All DBs
Position
99626..103267
Genome browser
AA seq
1213 aa
AA seq
DB search
MVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRAKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDM
SPRALEEVIYFAAYVVIDPKDTPLEPKSLLTEREYREKLQEYGHGSFVAKMGAEAIQDLL
KRVDLAAEIAELKEELKSASGQKRIKAVRRLDVLDAFNKSGNKPEWMVLNILPVIPPDLR
PMVQLDGGRFAASDLNDLYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMREIVAKEYAGNVKAAKRMVERGDERIWDILEEVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARLLMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEDAGREGEGMIFKDKDEAVMAYRNGYAHLHSRVGI
AVDSMPNKPWKDNQRLKIMVTTVGKILFNDIMPEDLPYLQEPNNANLTEGTPDKYFLEPG
QDIQEVIDGLEINVPFKKKNLGNIIAETFKRFRTTETSAFLDRLKDLGYYHSTLAGLTVG
IADIPVIDNKAEIIDAAHHRVEEINKAFRRGLMTDDDRYVAVTTTWREAKEALEKRLIET
QNPKNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFS
THGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLLIRAITDGKEVTETL
EERLQGRYTRKSVKHPETGEVLIGADQLITEDMARKIVDAGVEEVTIRSVFTCATRHGVC
RHCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRIQE
IFEARNPKGEAVITEVKGNVVEIEEDASTRTKKVYVQGKTGMGEYVVPFTARMKVEVGDE
VNRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGDKHVEVMVRQMLRK
VRVMDPGDTDLLPGTLMDISDFTDANKDIVISGGIPATSRPVLMGITKASLETNSFLSAA
SFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNIEPQAMNEIEVIDHT
EVSAEAVFTAEAE
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
gtggttgacgtaaatcgttttaaaagtatgcaaatcacattagcctcaccaagtaaggtc
cgttcatggtcttatggtgaagttaaaaaacctgaaacaatcaactaccgtacattaaaa
ccagaacgtgaaggactctttgacgaagtcatctttggtccaacaaaagactgggaatgt
gcgtgtggtaagtacaaacgtatccgttataaagggatcgtttgtgaccgctgtggggtt
gaggtaactcgtgctaaagtacgtcgtgaacgtatgggtcacattgagttaaaagctcct
gtatcacatatctggtatttcaaagggattccatctcgtatgggattgactcttgatatg
agtcctcgtgcccttgaagaagtgatctattttgcggcttatgtggtcattgatccaaaa
gatacaccgcttgaaccaaaatcattattaacagaacgtgaataccgtgaaaaactacaa
gagtatggtcatgggtcatttgtcgctaagatgggtgctgaagccattcaagatctcttg
aaacgtgtggacttggcagctgaaatcgctgaattaaaagaagagttaaaatctgcttct
ggtcaaaaacggattaaagcagttcgtcgtttagacgtccttgatgcctttaacaaatct
ggaaataaaccagaatggatggttcttaacatcctgccggttattccaccagatcttcgt
ccgatggttcaattggatggtggccgttttgcggcatcagacttgaatgacttgtaccgt
cgtgtgattaaccgtaacaaccgtttggcacgtttgttagaacttaatgcccctggcatc
attgttcaaaatgaaaaacgaatgcttcaagaagccgttgatgctttgattgataatggt
cgtcgtggtcgtccaatcactggaccaggaagtcgtccattgaaatcattgagccacatg
cttaaaggtaaacaagggcgtttccgtcaaaacttacttggtaaacgagtagacttctct
ggacgttccgttatcgctgttggtccaacccttaaaatgtatcaatgtggtgtcccacgt
gaaatggctatcgagctttttaaaccatttgtaatgcgcgaaattgttgccaaagaatat
gctggtaacgttaaagccgctaaacgtatggttgaacgtggcgacgaacgcatctgggat
atcttagaagaagttatcaaagaacacccagtcctacttaaccgcgcaccgacccttcac
agacttggtattcaggcttttgaaccggttcttattgacggtaaggcacttcgtcttcac
ccacttgtgtgtgaggcctacaatgccgacttcgatggagaccaaatggccatccacgtg
ccactttcagaagaagcacaagctgaagctcgtcttttgatgcttgctgcagagcacatc
ttgaaccctaaagatggtaaaccagttgttaccccatctcaggatatggttcttggtaac
tactatcttacgatggaagatgctggtcgcgaaggcgaaggtatgattttcaaggataaa
gacgaagctgtgatggcatatcgtaatggttatgctcatcttcatagtcgtgtgggtatc
gctgttgacagcatgccaaacaaaccttggaaagataatcaaagacttaaaataatggtg
acaactgttggtaagattttgtttaacgacatcatgccagaggaccttccttacctccaa
gagccaaacaatgccaacttgacagaaggaacacctgataaatacttccttgaacctggt
caagacatccaagaagtgattgatggcttagaaatcaatgtgccatttaagaagaaaaac
ctcggtaacatcattgcggaaaccttcaaacgtttccgtacaacagaaacatcagccttc
cttgaccgtttgaaagaccttggttactaccattcaacccttgctggtttgacagtgggt
atcgctgacattcctgttattgataataaagctgaaatcattgatgctgctcaccatcgt
gttgaagaaattaacaaagccttccgtcgtggtttgatgacagatgatgaccgttatgtt
gccgttacaacaacatggcgtgaagctaaagaagcccttgaaaaacgtctgattgaaaca
caaaatcctaagaacccaatcgttatgatgatggactcaggagctcgtggtaacatctct
aacttctcacagcttgcgggtatgcgtggtttgatggctgctcctaacggacgcatcatg
gaacttcctatcttgtcaaacttccgtgaaggtttgagcgttttggaaatgttcttctca
acccacggtgcacgtaaagggatgaccgatacggcccttaaaacagccgactcaggttat
cttactcgtcgtttggttgacgttgcccaagatgttatcattcgtgaggacgattgtggc
actgatcgtggtcttcttatccgtgctattacagatggtaaagaagttaccgaaacgctt
gaagagcgtcttcaaggtcgttacacacgtaaatcagtcaaacaccctgaaactggtgaa
gtcttgattggtgctgaccaattaatcactgaagacatggctcgtaagattgttgatgcg
ggtgttgaagaagtgaccattcgttctgtctttacctgtgcgactcgtcatggtgtctgc
cgtcactgttatggtatcaaccttgcaactggtgatgctgttgaagtgggtgaagcagtt
ggtactattgctgcccaatctatcggtgagcctggtactcagcttaccatgcgtaccttc
cacacgggtggtgtagcctcaaataccgatatcacacagggtcttcctcgtattcaagag
atctttgaagcacgtaatcctaaaggggaagcggtcattactgaagtgaaagggaatgtc
gtcgagattgaagaagatgcgtcaactcgtaccaagaaagtctacgttcaaggtaaaact
ggcatgggcgaatatgtcgtaccatttacagcacgtatgaaagttgaagttggcgacgaa
gttaatcgcggagctgctcttacagaagggtcaattcaaccgaaacgtctccttgaagtg
cgtgataccttgtcagttgaaacgtaccttcttgcagaagtacaaaaagtttaccgtagc
caaggggtagaaatcggagacaaacacgttgaggtaatggttcgccaaatgcttcgtaaa
gttcgtgtcatggatccaggtgatacagacctccttccaggtacacttatggatatttct
gatttcacagatgctaacaaagatattgttatctctggtggtatccctgcgacatctcgt
ccagttcttatgggtattactaaggcttcccttgaaaccaattccttcttatcagctgca
tccttccaagaaacaactcgtgttcttacagatgctgctatccgtggtaagaaagaccac
ttacttggtcttaaagaaaatgttatcattggtaaaatcatcccagctggtactggtatg
gctcgttaccgtaacatcgaaccacaagcgatgaatgagattgaagtgattgatcataca
gaagtctcagcagaagccgtttttacagcagaagcagaataa
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