Sphingopyxis sp. FD7: SPYCA_0822
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Entry
SPYCA_0822 CDS
T10393
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spfd Sphingopyxis sp. FD7
Pathway
spfd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spfd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SPYCA_0822 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spfd03021
]
SPYCA_0822 (rpoC)
03400 DNA repair and recombination proteins [BR:
spfd03400
]
SPYCA_0822 (rpoC)
Enzymes [BR:
spfd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SPYCA_0822 (rpoC)
Transcription machinery [BR:
spfd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SPYCA_0822 (rpoC)
DNA repair and recombination proteins [BR:
spfd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SPYCA_0822 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
BBB11564
LinkDB
All DBs
Position
890277..894554
Genome browser
AA seq
1425 aa
AA seq
DB search
MNQLTNFMNPVAKPETFDMIKIGIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFEAYIVLEPGLTPLEKFQLLTEDELLDAQDEYGEDAFSAG
IGAEAIRTLLENLDLEQERVDLMEELATTKSELKPKKIIKRLKVVESFIESGNRPEWMIL
EVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSLEREGEPGEGMLLADMAEVHQALHV
GAVTLHSKIISRVPQTDEDGNEYLKRFETTPGRMLIGECLPKSHTVPFDVVNRLLTKKEI
GDVIDQVYRHTGQKETVLFADAIMALGFRHAFKAGISFGKDDMIIPASKEQLVDETRALV
KDFEQQYQDGLITQQEKYNKAIDAWSQCGDKVANAMMDEIRATPKLEDGRLAPINSIYMM
AHSGARGSQAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCVVIEEDCGTTRGMEMRAIVQGGSTIASLGERILGRTTL
EDVVDKDGNVIAPVGTLLDEATTQRIEDAEVQSVKIRSPLVCEATMGVCGKCYGRDLARG
TPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQVNEQSNVEAISDGTIEYRDMATIV
DQRGRRLALSRSGEIAIIDSEGRERASHKLPYGAQIMHKDGEKVKKGDRIAEWDPFTMPL
ITEKQGVVKYQDLIDGKTLTEQVDEATGIAQRVVIEYRAAGRSKKEDLQPRLTLLDDASG
EAARYLLAVGTMISVEDGQEVQAGDVLARVSREASKTRDITGGLPRVAELFEARIPKDNS
VIAKISGRIEFVKDYKAKRKIAIVPEEGDPIEYLIPKSKVLEVQEGDMVKRGDALISGSP
NPHDILDVMGVEALAEYLVAEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDGGDTTLL
PGEQLDYLEMMEYNAKLPKNAKPAEGRPVLLGITKASLQTRSFVSAASFQETTRVLTEAS
VQGKIDSLQGLKENVIVGRLIPAGTGAAMNRVRVTASSKDAALRAAMRAANQEHLIAPRT
AAEEHEAELAQGPEAAIGDDPLGKVQGEDFTTDDVMVEERPDGEE
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagcttaccaacttcatgaacccggtcgcgaagcccgagaccttcgacatgatc
aagatcggcatcgcgagccccgagcgtatccgctcctggtcgttcggcgagatcaagaag
cccgagacgatcaactaccgcacgttcaagcccgagcgtgacggactgttctgcgcgcgc
atctttggcccgatcaaggattatgaatgcctgtgcggcaagtataagcgcatgaaatac
aagggcatcgtctgcgaaaaatgcggtgtcgaagtcacggtcacgaaagtgcgccgcgag
cgcatgggccatatcgagctcgccgcgccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgcatcggcctgctgctcgacatgcagctgaagcagctcgagcgcgtcctctat
ttcgaggcctatatcgtcctcgaacccggcctgaccccgctcgagaagttccagctcctc
accgaagacgaactgctcgacgcgcaggatgaatatggcgaggacgctttctcggccggc
atcggcgccgaggcgatccgcacgctgctcgaaaatctcgaccttgagcaggagcgcgtc
gacctgatggaagagctggcgaccaccaagtcggagctcaagcccaagaagatcatcaag
cggctgaaggtcgtcgaaagcttcatcgaatcgggcaaccgtcccgagtggatgatcctt
gaagtcgtccctgtgatcccgcccgaactgcgcccgctggtgccgctcgacggcggccgc
ttcgcgacgtcggacctcaacgacctctatcggcgcgtcatcaaccgcaacaaccgtctg
aaaaggctgatggaactgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgttg
caggaagccgtcgacgcgctgttcgacaacggccgccgcggccgcacgatcacgggcgcc
aacaagaggcccctcaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgc
cagaatctgctcggcaagcgcgtcgactattcgggccgttcggtcatcgtgaccggtccc
gaactcaagctgcaccagtgcggcctgcccaagaagatggcgctcgaactgttcaagccc
ttcatctacgcgcgcctcgacgccaagggtctgtcgatgaccctgaaacaggcgaagaag
tgggtcgaaaaggagcgcaaggaagtctgggacatcctcgacgaggtgatccgcgagcat
ccggtgctgctcaaccgcgcgccgacgctccaccgcctcggcatccaggcgttcgagccc
gtgctgatcgagggcaaggcgatccagcttcacccgctggtctgcgccgcgttcaacgcc
gacttcgacggcgaccagatggcggtccacgtcccgctttcgctggaagcgcagctcgaa
gcgcgtgtgctgatgatgtcgaccaacaacatcctcagccccgcgaacggcaagccgatc
atcgtgccgtcgcaggacatggtgctcggtctctattatctgtcgcttgagcgcgaaggc
gaaccgggcgagggcatgttgctcgccgacatggccgaagtgcatcaggcgctgcacgtc
ggcgcggtcacgctgcactcgaagatcatcagccgcgtcccgcaaaccgacgaagatggc
aatgagtatctcaagcgcttcgaaaccacgccgggccgtatgctgatcggcgaatgcctg
ccgaaatcgcacaccgtgcccttcgacgtcgtcaaccgccttctcaccaagaaggaaatc
ggcgacgtgatcgaccaggtctatcgccacaccggccagaaggagactgtgctgttcgcc
gacgcgatcatggcgctgggcttccgtcatgccttcaaggcgggcatctcgttcggcaag
gacgatatgatcatcccggcgtcgaaggagcagctggtcgacgagacgcgcgcgctcgtg
aaggattttgaacagcagtatcaggacggtctgatcacgcagcaggaaaaatataataag
gcgatcgacgcctggtcgcagtgcggcgacaaggtcgcgaacgcgatgatggacgaaatc
cgtgcaacgccgaagttggaggacggccgcctcgccccgatcaactccatctatatgatg
gcgcattcgggcgcgcgtggttcgcaggcccagatgaagcagctcgcgggtatgcgcggc
ctgatggccaagccgtcgggcgagattatcgaaacgccgatcatctcgaacttcaaggaa
ggcctgaccgtgctcgagtatttcaactcgacccacggtgcgcgcaagggtctggccgat
acggcgctcaagacggcgaactcgggttatctgacccgccgcctggtcgacgtcagccag
gactgcgtcgtgatcgaggaggattgcggcacgacccgcggcatggaaatgcgcgcgatc
gtgcagggcggctcgacgatcgcctcgctcggcgagcgtatcctcggtcgcacgacgctc
gaagatgtcgtcgacaaggatggcaatgtcatcgcgccggtcggcacgctgctcgacgaa
gcgacgacgcagcgcatcgaggatgccgaagtccagtcggtgaagatccgttcgccgctg
gtctgcgaagcgaccatgggcgtttgcggcaaatgctatggccgcgacctcgcccgcggc
acgccggtcaacatcggtgaagccgtcggcgtcatcgccgcgcagtcgatcggtgagccc
ggcacgcagctgacgatgcggaccttccacatcggcggtgcagcgcaggtcaacgaacag
tcgaacgtcgaagcgatttcggacggcacgatcgagtatcgcgacatggcgacgatcgtc
gaccagcgtggccgccgcctggcgctgtcgcggtcgggcgagatcgcgatcatcgacagc
gaagggcgcgagcgcgcgtcgcacaagctgccctatggcgcgcagatcatgcacaaggac
ggcgaaaaggtgaagaagggcgaccggatcgccgaatgggatccgttcaccatgccgctc
atcaccgaaaagcagggcgtcgtgaaatatcaggatctgatcgacggcaagacgctgacc
gaacaggtcgacgaagcgacgggcatcgcccagcgcgtcgtgatcgaatatcgcgccgcg
ggacgcagcaagaaggaggatcttcagccgcgcctgacgctgctcgacgacgcgtcgggc
gaagcggcgcgctatctgctcgcggtcggcacgatgatctcggtcgaggacggtcaggaa
gtgcaggcgggcgacgtgctggcgcgcgtcagccgcgaagcgtcgaagacgcgcgacatc
accggcggtctgccgcgcgttgccgagctgttcgaagcgcgcattccgaaagacaacagc
gtcatcgcgaagatcagcggccggatcgagttcgtcaaggattacaaggcgaagcgcaag
atcgcgatcgtgccggaggaaggcgatccgatcgaatatctgatccccaagtcgaaggtt
ctggaagtgcaggaaggcgacatggtcaagcgcggcgacgcgctgatcagcggttcgccg
aacccgcacgatattctcgacgtcatgggcgtcgaggcgctggccgaatatctggtcgcg
gaaatccaggaagtttatcgactccagggcgtgaagatcaacgacaagcacatcgaggtg
atcgttcgccagatgctgcagaaggtcgagatcaccgacggcggcgacaccacgctgctg
ccgggcgaacagctcgattatctggagatgatggaatataacgccaagctgccgaagaat
gccaagcccgccgagggccgtccggtgctcctcggcatcaccaaggcgtcgctgcaaacg
cgcagcttcgtctcggcggcgtccttccaggaaacgacccgcgttctcaccgaagcgtcg
gtgcagggcaagatcgactcgctccagggcctcaaggaaaatgtcatcgtcggccgcctc
atcccggcgggcaccggcgcggcgatgaaccgcgtccgcgtcaccgcctcgtcgaaggat
gccgcgctgcgcgccgcgatgcgcgccgcgaaccaggagcatctgatcgcgccgcggacc
gcggccgaggagcatgaagccgagctggcacagggtcccgaagcggcgatcggcgacgat
ccgctgggcaaggtgcagggcgaggacttcacgaccgacgatgtgatggtcgaagaacgc
cccgacggcgaggaataa
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integrated database retrieval system
