Sphingopyxis sp. FD7: SPYCA_1192
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Entry
SPYCA_1192 CDS
T10393
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
KO
K03666
host factor-I protein
Organism
spfd Sphingopyxis sp. FD7
Pathway
spfd02024
Quorum sensing
spfd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spfd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPYCA_1192 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
SPYCA_1192 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spfd03019
]
SPYCA_1192 (hfq)
03036 Chromosome and associated proteins [BR:
spfd03036
]
SPYCA_1192 (hfq)
Messenger RNA biogenesis [BR:
spfd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
SPYCA_1192 (hfq)
Chromosome and associated proteins [BR:
spfd03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
SPYCA_1192 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
BBB11934
LinkDB
All DBs
Position
complement(1277286..1277780)
Genome browser
AA seq
164 aa
AA seq
DB search
MSDKNQNLQDIFLNALRKSKTPVTMFLVKGVKLQGIITWFDNFSLLLRRDGQSQLVYKHA
ISTVMPSHDFDLSLLGGSLRDAPPSKGKALQDVFLNAVRRSDESVTMFLVNGVMLQGDIV
AFDLFCMLLERERQVQLVYKHAISTVQPNGPINLTDNDDEADDS
NT seq
495 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgataaaaatcagaatcttcaggatattttcctcaacgctctccgcaagagcaaa
acccccgtcacgatgtttctggtgaagggcgtcaagcttcagggcatcatcacctggttc
gacaatttctcgctgctgctccgccgcgacggccagtcgcagctggtgtacaaacatgcg
atttcgaccgtgatgccttcgcatgatttcgacctgtcgctgctcggcggcagtctgcgc
gatgcgccgcccagcaagggcaaggcgttgcaggacgtgttcctcaacgcggttcgccga
tcggacgaatcggtgacaatgttcctcgtcaacggcgtgatgttgcagggggatatcgtt
gcgttcgatctgttctgcatgttgctcgagcgcgaacggcaggtgcagctcgtttacaag
cacgcgatttcgacggtccagccgaacggtccgatcaacctgaccgataatgatgacgaa
gcggacgacagctga
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