Sphingomonas psychrotolerans: CVN68_08375
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Entry
CVN68_08375 CDS
T05307
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sphc
Sphingomonas psychrotolerans
Pathway
sphc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sphc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CVN68_08375 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphc03021
]
CVN68_08375 (rpoB)
03400 DNA repair and recombination proteins [BR:
sphc03400
]
CVN68_08375 (rpoB)
Enzymes [BR:
sphc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CVN68_08375 (rpoB)
Transcription machinery [BR:
sphc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CVN68_08375 (rpoB)
DNA repair and recombination proteins [BR:
sphc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CVN68_08375 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
B
Motif
Other DBs
NCBI-ProteinID:
ATY31988
UniProt:
A0A2K8MDM3
LinkDB
All DBs
Position
1833981..1838159
Genome browser
AA seq
1392 aa
AA seq
DB search
MATKAIEDGAQRPGSGGTMKRRIRKVFGNIHEVVQMPNLIEVQRESYEQFLRSDPSIGYV
SGLEKTLRSVFPIRDFAGTAELDFVNYELEQPKFDVEECRQRGITYAAPMRVTLRLIVFE
VDPDTEARSVLDIKEQDVYMGDMPLMTGNGTFFINGTERVIVSQMHRSPGVLFDHDRGKT
HASGKYLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTTLLYALNMNSEDILNYF
YNRVTYVRGPGGWQIPFDPINWRGAKPMFDIVDAKSGEIVFPAGQKISPRAANKAAKDGL
ETLLIPTEEIFGRYSAFDLINESTGEIYIEAGDEVSAENLELLDKAGIEKLELLDIDHIS
TGPWIRNTLKVDKAEEREQALSDIYRVMRPGEPPTLETAESLFSGLFFDPERYDLSAVGR
VKLNMRLDLDAEDTVTTLRTEDILAVVKTLVDLKDGKGEVDDIDNLGNRRVRSVGELLEN
QYRVGLLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLS
EVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSRVN
KYGFIETPYRRIIDGKVTNDVVYLSAMEEAKHTIAQASAELDEESRFTEELVSSRQAGEF
LMALPEQITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVKAEAPFVGT
GMEETVARDSGAAIGARRSGIVDQVDATRIVIRASGDVEATQSGVDIYTLMKFQRSNQST
CINQRPLVKVGEVVNAGDIIADGPSTEFGELALGRNALVAFMPWNGYNYEDSILISERIV
KDDVFTSIHIDEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDIL
VGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGIDKDE
RALAIEREEIERLKKDSDDERNILNRATWSRLKEMLIGQVATATPKGLRKGATIDADLLD
SVDRHEWWRFSVQDDAMQANLEAVKGQYDEAVKRIKDKFEDRREKLERGDELPPGVLKMV
KVFVAVKRKLQPGDKMAGRHGNKGVISRILPAEDMPFLADGTPVDLVLNPLGVPSRMNVG
QIFETHLGWAARQLGQQIGVALEDWRHANPDAVGGQMPDAVKTRLKEVYGDHYVAEIEAR
TSDQIIELATNLKPGVPMATPVFDGAREADVSEMLALAGLDTSGQSTLYDGRTGDTFDRK
VTVGIIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAA
YTLQEMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELKTDEP
GFDSDGVQIAAE
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggctaccaaagcgatcgaagacggcgcacagcgcccgggctcgggcggcacgatgaag
cgccgcatccgcaaggtgttcggcaacatccacgaagtggtccagatgccgaacctgatc
gaggttcagcgcgaatcctacgagcagttcctgcgcagcgatccctcgatcggctatgtc
tcgggcctcgaaaagaccctgcgctcggtcttcccgatccgcgacttcgccggcaccgcc
gaactcgatttcgtcaattacgagctcgagcagcccaagttcgacgtcgaggaatgccgt
cagcgcggcatcacctatgcggcgccgatgcgcgttaccttgcgcctgatcgtgttcgag
gtggatcccgatacggaagcccgttcggtgctcgatatcaaggagcaggacgtctatatg
ggcgacatgcccctgatgacgggcaacggcaccttcttcatcaacggcaccgagcgcgtg
atcgtctcgcagatgcaccgttcgccgggcgtgctgttcgatcacgatcgcggcaagacc
cacgccagcggcaagtatctcttcgccgcccgcgtgatcccgtatcgcggttcgtggctc
gatttcgagttcgacgccaaggacatcgtcaacgtccgtatcgaccgtaagcgcaagctg
ccggtgacgacgttgctctacgcgctgaacatgaacagcgaggacatcctcaattacttc
tacaaccgcgtgacctatgtccgcggtccgggcggctggcagatcccgttcgatccgatc
aactggcgcggcgccaagccgatgttcgacatcgtcgacgccaagtcgggcgagatcgtg
ttccccgccgggcagaagatcagcccgcgcgccgcgaacaaggccgccaaggacggtctc
gagacgttgctgatcccgaccgaggaaatcttcggccgctacagcgcgttcgatctgatc
aacgagtcgaccggcgagatttacatcgaggccggcgacgaagtgtcggccgagaatctc
gaactgctcgacaaggcaggcatcgaaaagctcgagctgctcgacatcgatcacatctcg
accggtccgtggatccgcaacacgctcaaggtcgacaaggccgaagagcgcgagcaggcg
ctgtcggacatctaccgcgtcatgcgccccggcgagccgccgacgctcgagaccgcggaa
tcgctgttcagcggcctgttcttcgatcccgagcgctacgacctctcggccgtcggccgg
gtcaagctcaacatgcgcctcgatctcgacgccgaggacaccgtcacgacgctgcgcacc
gaggacatcctcgcggtggtcaagaccctcgtcgacctcaaggacggcaagggcgaagtc
gacgacatcgacaatctcggcaatcgtcgcgtgcgttcggtgggcgaattgctcgagaac
cagtatcgcgtcggcctgctccgcatggagcgcgccgttaaggagcggatgtcctcggtc
gacgtgtcgacggtgatgccgaacgacctgatcaacgccaagcccgcggtcgccgcggtg
cgcgagttcttcggctcgtcgcagctctcgcagttcatggatcagaccaacccgctttcc
gaagtgacgcacaagcgtcgcgtttcggcgctcgggccgggtggtctcacccgcgaacgt
gcgggcttcgaagtccgcgacgtgcatccgacgcattatggccgcatctgcccgatcgaa
acgccggaaggcccgaacatcggtctgatcaacagcctcgcgtcgttcagccgcgtgaac
aaatacggcttcatcgagacgccctatcgtcgcatcatcgacggcaaggtgaccaacgac
gtcgtctatctgtcggcgatggaagaggccaagcacacgatcgcgcaggcttcggccgag
ctcgacgaggagagccgcttcaccgaggaactggtctcgtcacgtcaggcaggcgaattc
ctgatggcgttgcccgagcagatcacgctgatggacgtcagccccaagcagctcgtctcg
gtcgccgcatcgctcattccgttcctggaaaacgatgacgccaaccgcgcgctgatgggc
tcgaacatgcagcgccaggccgttccgctggtgaaggcggaagcgcctttcgtcggcacc
ggcatggaagagaccgtcgcccgcgattcaggtgccgcgatcggcgcacgccgttcgggc
atcgtcgatcaggtcgatgcgacgcgtatcgtcatccgcgcatcgggtgatgtcgaagcc
acccagagcggcgtcgacatctacacgctgatgaagttccagcgctcgaaccagtcgacc
tgcatcaaccagcgtccgctggtgaaggtgggcgaagtggtcaacgccggcgacatcatc
gcagacggcccgtcgaccgagttcggcgagctcgcgctcggccgcaacgcgctcgtcgcg
ttcatgccgtggaacggctacaactacgaggattcgatcctcatctccgagcggatcgtc
aaggacgacgtgttcacgtcgatccatatcgacgagttcgaagtgatggcccgcgacacc
aagctcgggcccgaggacatcacgcgcgacatcccgaacgtcggcgaggaagctctccgc
aacctcgacgaagccggcatcgtgtacatcggtgcagaggtcgagccgggcgacatcctc
gtcggcaagatcacgccgaagggcgagagcccgatgacgccggaagagaagcttctgcgc
gccatcttcggcgaaaaggcctcggacgtgcgcgacacctcgctgcgcctgcccccgggc
gttgccggcacgatcgtcgacgttcgcgtcttcaatcgccacggcatcgacaaggacgag
cgcgcgctggcgatcgaacgcgaagagatcgagcgcctcaagaaggactcggacgacgag
cgcaacatcctcaaccgtgcgacctggtcgcgcctgaaggaaatgctgatcggtcaggtc
gcgactgcgacgccgaagggcctccgcaagggtgcgacgatcgacgccgacctgctcgac
tcggtcgaccgccacgaatggtggaggttctcggtgcaggacgacgccatgcaggcgaac
ctcgaagcggtgaagggccagtatgacgaggccgtgaagcgcatcaaggacaagttcgag
gatcgccgcgagaagctcgagcgtggtgacgagctgccgcctggcgtgctcaagatggtc
aaggtcttcgtggcggtgaagcgcaagctgcagccgggcgacaagatggccggccgtcac
ggaaacaagggcgtcatctcgcgcatcctgccggcggaggacatgccgttcctcgccgat
ggaacgccggtcgacctcgtgctcaacccgctgggcgtgccttcgcgcatgaacgtcggt
cagatcttcgagacccatctcggctgggccgcgcgtcagctcggccagcagatcggcgtc
gcgctcgaagattggcgtcatgccaatcccgacgcggtcggcgggcagatgcccgatgca
gtcaagacgcgcctcaaggaagtttacggcgatcactatgtcgccgagatcgaggcgcgc
acgtcggaccagatcatcgagctggcgaccaatttgaagccgggcgtgccgatggcgacc
ccggtgttcgatggcgcccgcgaggcggacgtctccgagatgctggcgctggcgggtctc
gatacgtcgggccagtcgacgctgtacgacggtcgcaccggcgacacgttcgatcgcaag
gtgactgtgggcatcatctatatgctcaagcttcaccatctcgtggacgacaagatccac
gcgcgttcgatcgggccgtacagcctcgtcacgcagcagccgctgggtggtaaggcgcag
ttcggcggccagcgcttcggcgagatggaagtctgggctctgcaggcatatggcgcagcc
tataccctgcaggagatgctgacggtgaagtccgacgacgtggtcggccgcaccaaggtc
tacgaagcgatcgtcaagggcgacgacaccttcgaggccggcatcccggagagcttcaac
gtgctcgtcaaggaaatgcgctcgctgggcctcaacgtcgaactcaagaccgacgaaccg
ggcttcgacagcgacggcgtccagatcgcggcggaataa
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integrated database retrieval system
