Rhizorhabdus wittichii DC-6: HY78_01490
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Entry
HY78_01490 CDS
T05200
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sphd
Rhizorhabdus wittichii DC-6
Pathway
sphd03030
DNA replication
sphd03410
Base excision repair
sphd03420
Nucleotide excision repair
sphd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sphd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HY78_01490
03410 Base excision repair
HY78_01490
03420 Nucleotide excision repair
HY78_01490
03430 Mismatch repair
HY78_01490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sphd03032
]
HY78_01490
03400 DNA repair and recombination proteins [BR:
sphd03400
]
HY78_01490
Enzymes [BR:
sphd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HY78_01490
DNA replication proteins [BR:
sphd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HY78_01490
DNA repair and recombination proteins [BR:
sphd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HY78_01490
NER (nucleotide excision repair)
GGR (global genome repair) factors
HY78_01490
MMR (mismatch excision repair)
DNA ligase
HY78_01490
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HY78_01490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
PTCB-BRCT
5_3_exonuc
TF_Zn_Ribbon
Motif
Other DBs
NCBI-ProteinID:
ARR52223
LinkDB
All DBs
Position
284500..286626
Genome browser
AA seq
708 aa
AA seq
DB search
MTTESQAAERLAFLAAEIARHNALYHGEDAPEISDADYDALMRENAALEAEYPHLVRADS
PSKLVGAAPSGHLAKVAHAQPMLSLDNAFADEDVVDFVGRVRRYLSLGAEEPVALTAEPK
IDGLSCSLRYEKGVLVLAATRGDGTTGEDVTANVRTIDDIPERLRGGDLLSSPPDVFEIR
GEVYMAKADFAALNARLLAEAEDPAKARQFANPRNAAAGSLRQKDPGVTASRPLRFLAHG
WGEVSALPADTQKGVMDAIAAWGLPVSDDFVRVDGAAQALSHYRAIEAKRADLPFDIDGV
VYKIDRLDWQKRLGFVARAPRWAIAHKFPAEKAQTLLKDIDIQVGRTGKLTPVARLEPVT
VGGVVVTNATLHNADEIGRLDVHPGDRVVVQRAGDVIPQIVENLSRDETRDPWPFPQTCP
ECGSAAEREPGEVDYRCTGGLICPAQRVERLRHFVSRHALDIEGLGLTHIESFFRDGLVQ
SPADIFRLTKDILLTRERWAEVSAGNLIAAIDAKRHPPLDRFLFALGIRHVGEVTARDLA
RRYRSWEGLKAMIDRTIEARDAAVQAIGETDEKFAARTAKELAAIVETPGVGPEVALALV
DFFAEPHNADAVADLLSQLQPADVIHETRASEVSGKTVVFTGTLETMSRDEAKAQAEALG
AKVAGSVSAKTDLVVAGPGAGSKLKKASDLGIAVTDEAGWAKIVADAQ
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccgaatcccaggccgccgagcggctcgccttcctcgccgccgagatcgcccgg
cacaatgcgctctaccatggcgaggacgcgcccgagatcagcgacgccgactatgacgcg
ctgatgcgcgagaacgccgcgctggaagccgagtatccgcatctggtgcgcgccgattcg
ccgtcgaagctggtcggcgccgccccgtcggggcatctcgccaaggtcgcgcatgcgcaa
ccgatgctcagcctcgacaacgccttcgccgatgaggacgtggtcgacttcgtcggccgg
gtgcgccgctatctgagcctcggcgccgaggagccggtggcgctgaccgccgagcccaag
atcgacggcctgtcctgctcgctgcgctacgagaagggcgtgctggtgctcgccgcgacg
cgcggcgacggcacgaccggcgaggacgtcaccgccaacgtccgcaccatcgacgacatc
cccgagcggctgcgcggcggcgacctgctgtcgagcccgcccgatgtgttcgagattcgc
ggcgaggtctacatggccaaggccgacttcgccgcgctcaacgcccgcctgctggccgag
gccgaggacccggccaaggcgcgccagttcgccaatccgcgcaacgccgccgccggatcg
ctgcgccagaaggacccgggcgtcaccgcctcgcgccccctgcgcttcctggcgcatggc
tggggcgaggtatcggcgctgcccgccgacacgcagaagggcgtgatggacgcgatcgcc
gcctggggcctgccggtgtccgacgatttcgtccgggtcgacggcgccgcgcaggcgctg
tcgcattaccgcgcgatcgaggcgaagcgcgccgacctgccgttcgacatcgacggggtc
gtctacaagatcgaccggctcgactggcagaaaaggctgggcttcgtcgcgcgcgcgccg
cgctgggcgatcgcgcacaaattcccggcggagaaggcgcagaccctgctcaaggacatc
gacatacaggtcggccgcaccggcaagctgaccccggtcgcgcggctcgagccggtcacg
gtcggcggcgtcgtcgtcaccaacgccacgctccacaatgccgacgagatcggccggctc
gacgtccaccccggcgaccgggtggtggtgcagcgcgcgggcgacgtcatcccgcagatc
gtcgagaatctgtcgcgcgacgagacgcgcgatccctggcccttcccgcagacctgcccc
gaatgcggatcggcggccgagcgcgagccgggcgaggtcgactatcgctgcaccggcggc
ctgatctgcccggcgcagcgggtcgagcggctgcgccatttcgtgtcgcgccacgcgctc
gacatcgaggggctgggcctcacccatatcgagagcttcttccgcgacgggctggtccag
tcgccggccgacatcttccggctgaccaaggacatattgctgacccgcgagcgctgggcc
gaggtctcggcgggcaacctgatcgcggcgatcgacgccaagcgccatccgccgctcgac
cgcttcctgttcgcgctcggcatccgccatgtcggcgaggtgacggcgcgcgacctcgcc
cgccgctaccggagttgggagggcctcaaggcgatgatcgaccggacgatcgaggcgcgc
gacgccgccgtccaggcgatcggcgagaccgacgagaaattcgccgcccgcaccgccaag
gagctcgccgcgatcgtcgagacgcccggcgtcggaccggaggtcgcgctggcgctggtc
gacttcttcgccgagccgcacaatgccgatgcggtcgccgacctgctgagccagctccag
cccgccgacgtgatccacgagacgcgcgcgtcggaggtcagcggcaagacggtggtgttc
accggcacgctggagacgatgtcgcgcgacgaggccaaggcgcaggccgaggcgctcggc
gccaaggtggcgggatcggtgtcggccaagaccgacctggtggtcgcgggccccggcgcg
ggatcgaagctcaagaaggcgagcgacctgggcatcgccgtcaccgacgaggccggctgg
gcgaagatcgtcgccgacgcgcaatga
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