Sphingomonas sp. FARSPH: DM480_12360
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Entry
DM480_12360 CDS
T05685
Symbol
addA
Name
(GenBank) double-strand break repair helicase AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
sphf
Sphingomonas sp. FARSPH
Brite
KEGG Orthology (KO) [BR:
sphf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphf03400
]
DM480_12360 (addA)
Enzymes [BR:
sphf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DM480_12360 (addA)
DNA repair and recombination proteins [BR:
sphf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
DM480_12360 (addA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AXJ96173
LinkDB
All DBs
Position
2586759..2590184
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AA seq
1141 aa
AA seq
DB search
MAATDTLATLPRLKGAQAAASDPQAHVWLSASAGTGKTQVLAARVFRLLLRGVDPSAILC
LTFTKAGAAEMAQRINTRLAAWVRMAPTQLAADLDALGERATPDLQERARTLFARVLDAP
GGGLRIQTIHGFCQSLLAAFPVEAALTPGFRPLEAREEAVLARETLAALLADAERDGRLA
PIDTIGALSLRMGEGGAESFLLACARSLPALEALPSGIGPWLRRTLDLPQGDIGEALASG
CDLIDPHVIERLAAANRAWATATGLGHAARFDAWLAASPEDRALTLEDLAGTVLTGKGEP
RKASKKLVDADPDYEELAAYLGAHCLDLLSLTSRAAYADLLAAGLEVGRDYARAYAAAKR
RIGAVDFDDLIAVTVRLLEQPGIGDWVRYKLDQGTEHVLIDEAQDTNLNQWRIVTALASE
FFVGRGVFAPATRTLFTVGDYKQAIFGFQGTDPINFRWAEGHFAQRAAAVAGDLDWPEPE
RGLPFNQLSLTHSFRSTRPVLEFVDAAIAAIGDPGLGIAGDLERHASEVVGPGRVDLWPP
VAAGGSEEDEEAWIDDAVREQAVRIARAVRDWLRGGLMLESKGRALRPEDVMILVKRRGD
LASLIVARLYAEGVPVAGVDRLRLNAPLAVQDLLAAVRFVLQPEDDLSLASLLVSPLIGW
TQEELMTAAPRDAGSLWSRLTDTQADDRVAPLRDMLGRADIDTPYQFLEALLSGPLDGRR
KLIRRLGEEARDPIEELLNAALLFETTSTPSLQRFLDWFDRGDVEIVRDPSAPLDAVRVM
TAHGAKGLQAPLVILADATVDPTAAPRALVRWTPEAGAQPLPIFRPRSAERGGPLDAAIA
EIERRELEEHWRLFYVAATRAEERLVIGGALGPRAKGVPPAASWYAAASRAFDALGIAGE
GARSFIGTEPQPPVKPRPRAKAFAEEPATVPDWARRPAPQESRPSRPLAPSALGEDEVSD
PPPGPAMRAAAERGRLYHALFERLPAVAPPDRVRAADQWLASAGGLDDPRARADIVDCVL
SILDDARFIDLFGPAALAEAPIAATLDDGTVVSGTVDRLLVTADAVRVVDFKTGRRPPAS
ADDIPPYHLAQIGAYAAALAVVFPGRRVEAGLLYTAGPRLFDLTPAILAAHKPGLRRPQQ
S
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgactgacacgctcgcgacgctgccccggctgaagggcgcgcaggcggcggcc
agcgatccgcaggcgcacgtctggctgtcggcgtcggcgggcacgggcaagacgcaggtg
ctcgccgcgcgcgttttccgcctgctgctgcgcggcgtcgatccgtccgcgatcctgtgc
ctgacctttaccaaggccggcgcggccgaaatggcgcagcggatcaacacgcgcctcgcc
gcctgggtccggatggcgccgacgcagctcgcggccgacctcgacgcgctcggcgaacgc
gcgacgccagacctgcaggagcgcgcccgcacgctgttcgcacgcgtgctcgacgcgccc
ggcgggggcctgcgcatccagacgatccatggcttctgccagagcctgctcgccgccttc
cccgtggaagcggcgctgacccccggtttccgcccgctggaggcgcgcgaggaggcggtg
ctggcgcgcgaaacgctggcggcgctgctcgccgatgccgagcgtgacgggcggctcgcc
ccgatcgacacgatcggcgcgctgtcgctgcgcatgggggaagggggcgcggaaagcttc
ctgctcgcctgcgcgcggtcgctgcccgcgctggaggcgttgccgagcggcatcggtccg
tggctgcgccgcacgctcgacctgccgcagggcgatatcggcgaggcgctggcctcggga
tgcgacctgatcgacccgcacgtgatcgaacggctggcggcggcgaaccgcgcctgggcg
accgccaccggcctcggccatgccgcgcgcttcgacgcctggctcgccgcctcgccggag
gatcgcgcgctgacgctcgaggaccttgccggcaccgtgctcaccggcaagggcgagccg
cgcaaggcgtcgaagaagctcgtcgacgccgatcccgactatgaggagctcgccgcatac
ctcggcgcacattgcctcgacctcctctcgctgaccagccgcgccgcctacgccgacctg
ctcgccgcggggctggaggtcggccgcgactatgcgcgcgcctatgccgcggcgaagcgg
cggatcggcgcggtcgatttcgacgatctgatcgcggtcaccgtccgcctgctcgaacag
cccgggatcggcgactgggtccgctacaagctcgaccagggcaccgaacatgtgctgatc
gacgaggcgcaggacaccaacctcaaccagtggcggatcgtcaccgcgctcgcgtccgaa
ttcttcgtcggccgcggcgtcttcgcgccggcgacgcggacgctgttcaccgtcggcgac
tacaaacaggcgatcttcggttttcagggcaccgatccgatcaacttccgctgggcggag
gggcatttcgcgcagcgcgccgccgcggtcgcgggcgacctcgactggccggagccggag
cgcggcctgccgttcaaccaattgtcgctgacccattccttccgctcgacgcgccccgtg
ctcgaattcgtcgatgccgcgatcgcagcgatcggcgatccgggcctcggcatcgccggc
gatctcgaacgccacgccagcgaggtcgtcgggccgggccgcgtcgacctgtggcccccc
gtcgccgcgggcggcagcgaggaggacgaggaagcctggatcgacgacgccgtgcgcgaa
caggcggtgcgcatcgcgcgcgcggtgcgcgactggctgcgcggcgggctgatgctggag
agcaagggccgcgcgctgaggcccgaggacgtgatgatcctcgtcaagcggcgcggcgac
cttgcctcgctgatcgtcgcgcggctctatgcggaaggggtgccggtcgcgggcgtcgat
cgcctgcgcctcaacgcgccgctcgcggtgcaggacctgctcgccgcggtccgcttcgtg
ttgcagccggaggacgacctgtcgcttgccagcctgctcgtctcgccgctgatcggctgg
acgcaggaggaactgatgaccgccgccccgcgcgacgcgggcagcctgtggtcgcggctc
accgatacgcaggccgacgatcgcgtggcccctttgcgcgacatgctcggccgcgccgac
atcgatacgccctatcagttcctcgaggcgctgttgtccggcccgctcgatggccggcgc
aagctgatccgccggctgggcgaggaagcgcgcgatccgatcgaggaattgctcaacgcc
gccttgctgttcgagacgacgtcgaccccgtcgctgcaacgcttcctcgactggttcgac
cgcggcgatgtcgagatcgtccgcgacccctccgcgccgctcgatgcggtgcgcgttatg
accgcgcatggcgccaagggtctgcaggcgccgctcgtcatcctcgccgacgcgaccgtc
gatcccaccgccgcgccgcgcgctctggtgcgctggacgccggaagccggcgcgcaaccg
ctgccgattttccgcccgcgctccgccgagcgcggcgggccgctggacgcagcgatcgcg
gagatcgagcggcgcgagctggaggagcattggcggctgttctacgtcgcggcgacgcgc
gcggaggaacggctggtcataggcggcgcgctgggtccacgcgcgaagggcgtcccgccc
gcggcgagttggtacgccgccgcatcgcgcgccttcgacgccctcggcatcgcgggggag
ggcgcgcgcagtttcatcggcaccgaaccgcagccgccggtcaagccgcgaccgcgcgcc
aaggcctttgcggaggaacccgccaccgtccccgactgggcgcggcgacctgcgccgcag
gaaagccgcccgtcgcgcccgctcgccccgtccgcgctcggcgaggacgaggtcagcgat
ccgccccccgggccggcgatgcgcgccgccgccgagcgcggccggctgtaccacgccctg
ttcgagcggctgcccgcggtcgcgccgcccgatcgcgtccgcgcggccgaccagtggctg
gcaagcgccggcggcctcgacgatcctcgcgcgcgtgcggacatcgtcgactgcgtgcta
tcgatcctggacgatgcgcgcttcatcgacctgttcggcccggcggcgctggccgaagcg
ccgatcgccgcgacgctggacgacggcaccgtcgtatcgggcaccgtcgatcggctgctg
gtgaccgcggacgcggtgcgcgtcgtcgatttcaagacggggcgccgcccgcctgcgtcg
gcggacgacatcccgccctatcacctcgcgcaaatcggcgcttatgccgccgcgctcgcc
gtggtgtttccggggcggcgggtggaggcgggactgctctacactgctgggccgcgcctg
ttcgacctgaccccggcgatcctcgccgcgcacaagccgggcttgcgccgtccccagcaa
agctag
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