Sphingopyxis fribergensis: SKP52_06440
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Entry
SKP52_06440 CDS
T03542
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sphk
Sphingopyxis fribergensis
Pathway
sphk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sphk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SKP52_06440 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphk03021
]
SKP52_06440 (rpoB)
03400 DNA repair and recombination proteins [BR:
sphk03400
]
SKP52_06440 (rpoB)
Enzymes [BR:
sphk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SKP52_06440 (rpoB)
Transcription machinery [BR:
sphk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SKP52_06440 (rpoB)
DNA repair and recombination proteins [BR:
sphk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SKP52_06440 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Phage_Mu_Gam
Motif
Other DBs
NCBI-ProteinID:
AJA08213
UniProt:
A0A0A7PG95
LinkDB
All DBs
Position
1359719..1363897
Genome browser
AA seq
1392 aa
AA seq
DB search
MATKAKSVGKTLEATASKRIRKLFGNIHEAVEMPNLIEVQRESYEQFLRSDPSVGYVSGL
EKTLRSVFPIRDFAGTAELDFVHYELESPKYDVDECRQRGITYAAPMKVTLRLIVFEVDS
ETDTRSVLDIKEQDVYMGDMPLMTENGTFFVNGTERVIVSQMHRSPGVLFDHDRGKTHSS
GKFLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTSLLYALGMSGEEILNHFYDR
LVFERAENGWRVPFMVENWRGAKPAFDVVDAKTGEVVFAAGHKISPRLANKAAKDGLDTL
LIPTEEIFGRYSAYDLINESTGEIYIEAGDEVSAENLEKIDAAGIDKLVLLDIDHNNTGP
WIRNTLKADKAEDRDQALSDIYRVMRPGEPPTRETAEALFGGLFFDPERYDLSAVGRVKL
NMRLGLEAEDTVTTLRSDDILAVVKELVNLKDGKGEIDDIDNLGNRRVRSVGELLENQYR
VGLLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVT
HKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYG
FIETPYRKIIDGKVTTDVVYLSAMEEQKHTVAQANADLNPDGSFIDELISAREAGEFLMA
PKDQITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLIRAEAPVVGTGME
ETVARDSGAAIAARRGGVIDQVDATRIVIRATDMVEPGKSGVDIYRLQKFQRSNQNTCIN
QRPLVKVGEIVRAGDIIADGPSTELGELALGKNVLVAFMPWNGYNYEDSILISERIVKDD
VFTSIHIEEFEVTARDTRLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVGPGDILAGK
ITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTVVEVRVFNRHGIDKDERAI
AIEREEIERLKQDADDERAILNRATFSSLKELLIGQSTSAVPKGLKKGDVVTEEMLVNLD
RADWWKLAVVEDNAQTALEAIKAQYDEAIKRISAKYEDRVEKLQRGDELAPGVLKMVKVF
VAVKRKLQSGDKMAGRHGNKGIISRILPIEDMPFLEDGTHVDFVLNPLGVPSRMNVGQIL
ETHLGWASRGFGQQITAALEDWRMANPDPEAGAPPEAVREALLQAYGDEYADEIKARTTE
EVVELAGNLSVGVPFATPVFDGAREGDVSAMLERAGLDRSGQVDLYDGRTGDRFDRKVTV
GYMYILKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTL
QEMLTVKSDDVIGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELSSYEEVDP
DNAPDALPEAAE
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaaggcgaagtcggtgggcaagaccctcgaagcaaccgcaagcaagcgaatc
cgtaagctgttcggcaacatccacgaagcggtggagatgcccaacctcatcgaggttcag
cgcgaatcttacgaacagttcctgcggtccgacccctcggtcggctatgtttcgggcctt
gaaaagacgctgcgcagcgtttttccgatccgcgatttcgccggcacggccgagctcgac
ttcgtccattacgaacttgaatcgccgaagtatgacgtcgacgaatgccgtcagcgcggc
atcacctatgcggcgccgatgaaggtcacgctgcgcctgatcgttttcgaggtcgacagc
gaaaccgacacccgttcggtcctcgatatcaaggagcaggacgtttacatgggcgacatg
ccgctcatgaccgagaacggcaccttcttcgtcaatggcaccgagcgcgttatcgtgtcg
cagatgcaccgttcgccgggtgtgctcttcgaccatgaccgcggcaagacccactcgtcg
ggcaagtttcttttcgccgcgcgcgtgattccgtatcgcggatcgtggctcgacttcgaa
ttcgatgccaaggacatcgtcaacgtccgtatcgaccgcaagcgcaagctgccggttacc
agcctgctgtacgcgctgggcatgtcgggcgaagaaatcctcaaccatttctatgaccgg
ctggtcttcgagcgcgccgaaaacggctggcgcgtgcccttcatggtcgaaaactggcgc
ggcgcgaagccagctttcgatgtggtggatgccaagaccggcgaagtcgtgttcgcggcg
ggccacaagatcagcccgcgccttgccaacaaggcggcgaaggacggtctcgacacgctg
ctgatcccgaccgaggaaatcttcggccgttactcggcctatgacctgatcaacgagtcg
accggcgagatctatatcgaagctggcgacgaagtgagtgccgagaatctcgagaagatc
gacgccgcggggatcgacaagctcgtcctgctcgacatcgaccacaacaacaccggcccg
tggattcgcaacacgctgaaggccgacaaggccgaggaccgcgaccaggcgctttcggac
atctaccgcgtgatgcgccccggcgaaccgccgacgcgcgaaactgcggaagccttgttc
ggcggcctgttctttgaccccgagcgttacgacctgtcggccgtgggccgcgtcaagctc
aacatgcgccttggcctcgaagccgaggacacggtcaccacgctgcgtagcgacgacatc
ctcgccgtcgtcaaggagctcgtgaacctgaaggacggcaagggcgaaatcgacgatatc
gacaacctcggcaaccgccgtgtccgttcggttggcgaactgctcgaaaaccagtatcgc
gttggcctgctccgcatggagcgcgccgtgaaggagcgcatgagctcggtcgatgtgtcg
accgtgatgccgaacgacctgatcaacgcgaagccagcggtcgccgcggtgcgcgaattc
tttggttcgtcgcagcttagccagttcatggaccagaccaacccgctgtcggaagtcacc
cacaagcgccgcgtgtcggcgctcgggccgggtggtctgacccgcgagcgcgcgggcttc
gaagtccgcgacgttcacccgacgcactatggccgtatctgtccgatcgaaacgccggaa
ggcccgaacatcggtctgatcaactcgctcgcgacctttgcgcgcgtgaacaaatatggc
ttcatcgaaaccccgtatcgcaagatcatcgacggcaaggtcacgaccgacgtcgtttac
ctgtcggcgatggaagagcagaagcacaccgttgcgcaggcgaacgccgacctcaacccc
gatggcagcttcatcgacgagctgatctcggcgcgcgaagccggcgagtttctgatggcg
cccaaggatcagatcacactgatggacgtgtcgccgaagcagcttgtttcggtcgcggcc
tcgctgatcccgttcctggagaacgatgacgccaaccgcgcgctcatgggatcgaacatg
cagcgtcaggctgtgccgctgatccgggccgaagcgcccgtcgtcggcaccggcatggaa
gaaaccgttgcacgcgactctggtgccgccatcgcggcgcgccgcggcggcgtgatcgac
caggtcgatgcgacgcgtatcgttatccgcgcgaccgacatggtcgaacccggcaagtcg
ggcgtcgacatctatcgcctgcagaagttccagcgttcgaaccagaacacctgcataaac
cagcgtccgctggtgaaggtgggcgagatcgtccgcgcgggcgacatcatcgccgacggt
ccctcgaccgaactcggcgaactggcgctgggcaagaatgtgctcgtcgcgttcatgccg
tggaacggctacaattatgaggactcgatcctcatcagcgaacgcatcgtgaaggacgac
gtgttcacctcgatccacatcgaggaattcgaagtcaccgcgcgcgacacgcgtcttggg
ccggaagacatcacgcgcgacatcccgaacgtcggcgaggaagcgcttcgcaacctcgac
gaagcgggcatcgtctatatcggcgccgaagtcggccccggcgacatcctcgcgggcaag
atcaccccgaagggggaatccccgatgacgccggaagaaaagctgctccgcgcgatcttc
ggtgaaaaggccagcgacgtgcgcgacacctcgctccgcctgccgccgggcgtgtcgggc
acggtcgtcgaagtccgcgtcttcaaccgtcatggtatcgacaaggacgaacgcgcgatc
gcgatcgaacgcgaagagatcgaacgtctgaagcaggatgccgacgacgaacgcgcgatc
cttaaccgtgcgaccttctcgagcctcaaggaactgctcatcggtcaatcgaccagcgcc
gtgccgaagggtctgaaaaagggcgatgtcgtcaccgaagagatgctcgtcaatctcgac
cgcgccgactggtggaagctggctgttgtcgaagacaatgcccagaccgcattggaagcg
atcaaggcgcagtatgacgaagcgatcaagcggatcagcgcgaaatatgaagatcgcgtc
gaaaagctgcagcgcggcgacgaactcgccccgggcgtgctcaagatggtcaaggtcttc
gtcgcggtgaagcgtaagctgcagtcgggcgacaagatggccggccgtcacggcaacaag
ggcatcatcagccgcatcctgccgatcgaggacatgccgttcctggaagatggcacgcac
gtcgacttcgtgctcaacccgctgggcgtgccgtcgcgcatgaacgtcgggcagattctc
gaaacgcacctcggctgggcatcgcgtggcttcggccagcagatcaccgcggcgctcgag
gattggcgcatggcgaaccccgaccccgaagcgggcgctccgcccgaggcggttcgcgag
gcgctgttgcaggcctatggcgatgaatatgccgatgagatcaaggcgcggaccacggaa
gaggtcgtcgaactcgccggaaacctgtcggtcggcgtgcctttcgcgaccccggtgttc
gacggcgcgcgtgaaggcgacgtgtcggcgatgctggaacgcgcgggtctcgaccgctcg
ggtcaggtcgatctgtacgatggccgcacgggcgaccgtttcgaccgcaaggtgacggtg
ggatatatgtatatcctgaagctgcatcacctggtcgacgacaagatccacgcgcgttcg
atcgggccgtacagcctcgtcacccagcagccgctgggcggtaaggcgcagttcggtggc
cagcgcttcggtgaaatggaagtgtgggcgctgcaggcttatggcgcggcgtacacgctt
caggaaatgctgacggtgaagtccgatgacgtgatcggccgcaccaaggtttacgaagcg
atcgtcaagggcgacgacaccttcgaggccggcattccggaaagcttcaacgtgctcgtc
aaggaaatgcgctcgctgggcctcaacgtcgaactgtcttcctatgaggaagtagatccc
gacaacgccccggatgcccttcccgaagccgccgaataa
DBGET
integrated database retrieval system
