Staphylococcus piscifermentans: SAMEA4384060_2323
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Entry
SAMEA4384060_2323 CDS
T06938
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
spic
Staphylococcus piscifermentans
Pathway
spic03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spic00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAMEA4384060_2323 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spic03021
]
SAMEA4384060_2323 (rpoB)
03400 DNA repair and recombination proteins [BR:
spic03400
]
SAMEA4384060_2323 (rpoB)
Enzymes [BR:
spic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAMEA4384060_2323 (rpoB)
Transcription machinery [BR:
spic03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAMEA4384060_2323 (rpoB)
DNA repair and recombination proteins [BR:
spic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAMEA4384060_2323 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF2171
Motif
Other DBs
NCBI-ProteinID:
SNV09048
LinkDB
All DBs
Position
1:complement(2412599..2416150)
Genome browser
AA seq
1183 aa
AA seq
DB search
MAGKFVQYGRHRKRRNYARISEVLELPNLIEIQTKSYDWFLKEGLLEMFRDISPIEDFTG
NLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLINKETGEVKDQEVFMGDFPLMT
DTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGRENYDATVIPNRGAWLEFETDAKDIV
YVRIDRTRKLPLTVLLRALGFSTDQSIIDLLGDNEYLRNTLEKDSTENTEQALLEIYERL
RPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKMNKKLHLKHRLFNQKLAEPIVNSDTG
EIVAEEGTVLDRRKLDEIMDVLESNANIEVDELEDSIVNEPVETQSIKVYVPNDEEGRTT
TVIGNAFPDSEVKCITPADIVASMSYFFNLLHGIGQTDDIDHLGNRRLRSVGELLQNQFR
IGLSRMERVVRERMSIQDTDSITPQQLINIRPVIASIKEFFGSSQLSQFMDQANPLAELT
HKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFG
FIETPYRKVDLETNTVTDQIDYLTADEEDSYVVAQANSRLDDEGHFLSEEVVCRFRGNNT
IMDREKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPESPFVGTG
MEHATARDSGAAVINKHFGRVEHVESNQIKVRRIIEEDGQQFDGEVDTYRLAKFKRSNSG
TCYNQRPIVKDGDIVSQGEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAVIMSERL
VKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVAESALKNLDERGIVYVGAEVKDGDI
LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREDGDDS
LSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGTPIDIMLNPL
GVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWSTIEEAGMARDGKTVLYDG
RTGEPFDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEILTYKSDDTVGRVKTYEAIVKGENISKPSVPESFRVLMKELQSLGL
DVKVMDEDDKEIEMADVDDDDVNEHKVNIQQSSIPESQKETTD
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggtaaatttgtccaatatggaagacatcgtaaacgtagaaattacgcgagaatt
tccgaggttttagaattaccgaaccttattgaaattcaaacgaaatcgtatgattggttc
ttaaaagaaggattacttgaaatgttcagagatatttctccgattgaagatttcacaggc
aacctttctttagaatttgtggattacagattaggtgaaccgaaatatgatttagaggaa
tctaagaaccgtgacgcaacttatgctgcacctcttcgtgtcaaagtgcgtctcattaac
aaagaaacaggagaagtgaaagaccaagaagtattcatgggtgatttcccattaatgact
gatacgggtactttcgtaattaatggtgctgaacgtgttatcgtttcacaattagttcgt
tctccatccgtatatttcaatgaaaaaatagataaaaacggccgtgaaaactatgatgcg
actgtaattcctaaccgtggtgcttggttggaattcgaaacagatgcaaaagacatcgtt
tatgtgcgtattgatagaactagaaaattgccgttgactgtattacttcgtgcacttggt
ttctcaactgaccaatcaatcattgatttgttaggtgataacgagtacttacgtaatact
cttgaaaaagatagtactgaaaatactgaacaagcattattagaaatttatgaacgttta
cgccctggcgaaccacctacagtagaaaacgcaaaaagcttgctctactctcgtttcttc
gatccaaaacgttatgatttagcgagtgtaggccgctataaaatgaacaaaaaacttcat
ttgaaacatcgtttgttcaaccaaaaattggctgaaccaattgtgaacagcgatactggt
gaaattgttgctgaagaaggtactgtattagatcgtcgtaaattagacgaaatcatggat
gttcttgaatctaatgctaacatcgaagtagatgagttagaagacagtattgtaaatgaa
ccagttgaaactcaatcaatcaaagtttacgtaccaaatgatgaagaaggacgcacaaca
actgtaatcggtaacgcattccctgattcagaggttaaatgcattacgcctgcagatatt
gttgcttctatgtcatacttcttcaacttattgcacggcatcggacaaactgatgatatt
gaccatttaggtaaccgtcgtttacgttcagtaggcgaattgcttcaaaaccaattcaga
atcggtttatcaagaatggaacgtgtggtacgtgaaagaatgtcaattcaagatactgac
tctatcacaccgcaacaacttatcaacatccgtccggttattgcttcaattaaagagttc
ttcggaagctctcaattgtctcaatttatggaccaagcgaacccattagctgaattgaca
cacaaacgtcgtttatcagcattaggacctggtggtttaactcgtgaacgtgctcaaatg
gaagtgcgtgacgttcactattctcactatggccgtatgtgtccgattgaaacgccagag
ggtccgaacatcggtttgatcaactcgctatctagttatgcgcgtgtgaacgaatttggt
ttcatcgaaacaccatatcgtaaagttgaccttgaaactaatactgtaactgatcaaatt
gattatctgacagctgatgaagaagacagctatgttgtagcccaagcaaactctcgttta
gatgatgaaggccacttcctcagcgaagaagtagtgtgtcgtttccgtggtaacaacaca
atcatggaccgagaaaaaatggactacatggatgtatctcctaaacaagtagtgtcagct
gcgacagcatgtatcccattcttagaaaacgatgactctaaccgtgcattaatgggtgcg
aacatgcaacgtcaagcagtaccattgatgaacccagaatctccatttgtaggtacaggt
atggaacatgctactgcacgagattcaggtgctgccgttatcaacaaacactttggtcgt
gtagaacatgttgaatcaaatcaaattaaagtgcgtcgtattattgaagaagacggccaa
caatttgatggtgaagtagatacgtacagattagctaaatttaaacgttctaactcaggt
acttgttataaccaacgtcctatcgttaaagatggcgacattgtaagccaaggcgaaatc
ttagcagatggtccttcaatggaacttggtgaaatggcgttaggccgaaacgtagttgta
ggattcatgacttgggacggttataactatgaagatgcggttatcatgagcgaacgtctt
gtgaaagacgatgtctacacttcaattcatattgaagaatacgaatcagaagcacgtgat
actaaattaggacctgaagaaatcacacgtgacattcctaacgttgcagaaagtgcactt
aaaaacttagatgaacgcggaattgtttacgtaggtgctgaagttaaagatggtgacatc
ttagtaggtaaagtaacgcctaaaggtgtaacagaattaactgccgaagaacgtttatta
cacgctatctttggtgaaaaagcacgtgaagtccgcgatacttcattacgtgtacctcat
ggtgcaggcggtatcgttctagatgttaaagtgttcaaccgtgaagacggcgatgattca
ttatctccaggtgttaaccaattagtgcgtgtatatatcgttcaaaaacgtaaaattcac
gtaggggataaaatgtgtggtcgtcatggtaacaaaggggttatctctaaaatcgttcct
gaagaagatatgccttatttaccagacggaacaccaattgatatcatgttgaacccactt
ggtgtaccatcacgtatgaacatcggacaagtgcttgaattgcacttaggtatggctgct
aaaaacttaggtatccatgttgcatcaccagtatttgatggtgcgaacgatgacgatgta
tggtctactattgaagaagctggcatggcaagagatggtaaaactgtattatacgatgga
cgtacaggtgaaccattcgataaccgtatctctgtcggtgtaatgtacatgttgaaactt
gcacacatggttgacgataaactacatgcacgttcaactggtccttactcacttgttaca
caacaaccattgggtggtaaagctcaattcggtggacaacgtttcggtgagatggaggta
tgggcacttgaagcttacggtgctgcgtacacattacaagaaatcctaacttataaatct
gatgatactgtaggtcgtgtaaaaacttacgaagcaatcgttaaaggtgaaaacatctct
aaaccaagtgttcctgaatcattccgtgtattgatgaaagaattacaaagtttaggtcta
gatgttaaagtcatggatgaagatgataaagaaattgaaatggcagatgttgacgacgat
gacgtaaatgagcataaagtcaatattcaacaatcttcaattcctgaatcacaaaaggaa
actactgactaa
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integrated database retrieval system
