Sardina pilchardus (sardine): 134070954
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Entry
134070954 CDS
T10667
Symbol
smg8
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8
KO
K18734
protein SMG8
Organism
spil Sardina pilchardus (sardine)
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spil03019
]
134070954 (smg8)
Messenger RNA biogenesis [BR:
spil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
134070954 (smg8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
Motif
Other DBs
NCBI-GeneID:
134070954
NCBI-ProteinID:
XP_062383481
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All DBs
Position
23:815000..823587
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AA seq
937 aa
AA seq
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MALPVSIGAFLQSEIIEDPLYKDEGVCVLGIFGKSAMQPGSPKESLLNTLADKHIFSLFG
PGDADNQEDSGAVIQAYYNQESRVLYLVLTSVFDNRQLLKACENLCAGVGHAEAHELWKG
AEKQHCMQLLYLFSLCHVLLLIHPTCSFDVTYDKLFRALDALRQKVLPLLRATLKDSPVS
KEWKMNCRPCPPRLLFVFQMNGTLRVSGSGSGNGVDGSGGNSDKPKKHSPRRRLQHALED
QIYRIFRKSRVLTNQSSNCLFTVPANQAFVYVVPGPDEDPIGALLAQLRSNCALRDNDTS
TPAPGPRRYNQMRHSSRQPSFNVENTNLSSGGQLVDCTLKEFLWQHVELVLTKKGFDDSV
GRNPQPSHFELPTYSRWAQVAFRLHQVMMSNTEEETAEIAIKVQAQLKVLEGFLDAEAKF
SENRCQKALPLAHSAYQSNLPHNYTTAVHKNQLAAALRVYSQHARGIAFQRYARQLHEDC
YAFWSNGHQLCEERSLTDQHCVHKFHLLPKTGEKPELDHNPPIMQHNSRGRSTSACNCGR
KQSPREDPFDIQAANYDFYQMLEEKCCGKLERIQFPVFQASTPDPAPASDDTRSRSRTPE
PVAPPAGEEGAEQLKEKEGGVSVSHTHTPGDSTGLSLALSLGQSTDSLGPYGDGTEGPEK
RPSLVDRQPSTVEYLPGMLHSGCPKGLLPKFSSWALVKLGPAKSYNPHTGLEQPGFLPGS
HFLLPWDVVIRCRPEEDAGGVGEPLDGSVASSSSWPAPNKALGGKRGGAGYLWRGRRRDD
VARAFVGFEYEDSRGRRFLSSAPEKVVKVLGPGGAKETASRALSCDMPLYVPSPAQGRGL
KPHYAQLARLFIVVPDAPLELTLSPQVQPGPAPCPVFHPEQPEVVLAPDSVWVLRFPYAY
VTERGPCYPPKENQPLASHRVLRGILRANTASPPPPQ
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggctctgccagttagtataggagcttttttacagtcggagatcatagaggaccctcta
tacaaagatgagggtgtttgtgttttgggaatatttggaaaaagcgcaatgcaacccgga
tcccccaaagaatcactcctcaacaccctagccgacaagcacattttctctctgttcgga
ccgggtgacgcggataaccaggaggacagtggagccgtgatccaggcgtattataatcag
gaaagccgcgtattatatctcgtcctgacttcagtgtttgataatcgacagcttctcaaa
gcatgtgagaatttgtgcgcgggtgtcggacacgcagaagctcacgagttgtggaaggga
gcggagaagcagcactgcatgcagttgctctacctcttctctctgtgccacgttcttctg
ctcatacaccccacctgctcatttgatgtcacttatgataaactgttccgcgctttggac
gcacttcgtcaaaaggtactaccactactaagggctactttgaaagactcgcccgtatca
aaagaatggaagatgaactgtcgcccgtgtccgccccgtttgttgttcgtgttccagatg
aacggcacactccgggtgagtggttctggaagtgggaacggcgtcgacggttctggagga
aactcagacaagcccaaaaagcactctccgcgaagacgcctgcagcacgcgcttgaggat
caaatttatagaatatttcgtaaaagtcgagtgctcaccaatcaaagcagcaactgtctt
tttacagtacctgctaaccaagcatttgtgtacgtcgttcctggacccgacgaagaccca
atcggtgcgctgctggctcagttgcggtccaactgcgccttacgggacaatgacacgagc
actccagcaccgggtccacggcgctacaaccagatgcgccactcgtctagacagccctct
ttcaacgtggagaacacgaacctctcctccgggggtcagctggtggactgcactttgaag
gagtttctgtggcagcacgtggagttggtgttgaccaagaaaggcttcgatgacagcgtg
ggtcgcaacccccagccctcacacttcgagctgcccacctactccagatgggcgcaggtg
gccttccgtcttcaccaggtgatgatgagcaacaccgaggaggaaacggccgagatcgcc
atcaaggtgcaggcgcagctgaaggtgctggaggggttcctggacgccgaggccaagttc
tcggagaaccggtgccagaaggcgcttccgctggcccacagcgcgtaccagtccaacctg
ccgcacaactacaccaccgcggtgcacaagaaccagctggccgcggccctgcgcgtctac
agccagcacgcacgaggcatcgccttccagcgctacgcccgccagctgcacgaggactgc
tacgccttctggagcaacggacaccagctgtgcgaggagcgcagcctcaccgaccagcac
tgcgtgcacaagttccacctgctgcccaagacaggagaaaagccggagttggaccacaac
cctccaatcatgcagcacaacagcagggggcgctctaccagcgcctgcaactgcgggagg
aagcagagtcctcgggaggaccccttcgacatccaggccgccaactacgacttctaccag
atgctggaggagaagtgctgtgggaagctggagcggatccagttccccgtgttccaggcc
agcacgcctgacccggcgccggccagcgacgacaccagaagcagaagcagaaccccggag
ccagtagcgccccccgctggggaggagggggcggagcagctgaaggagaaggagggcggc
gtgagcgtgagccacacacacacgccgggcgacagcacgggcctgagcttggcgctgagt
ctgggtcagtccaccgacagcctgggcccctacggggacggcaccgagggcccggagaag
aggcccagcctggtggaccgccagccctccaccgtggagtacctgcccggcatgctgcac
tccggctgccccaagggcctgctgcccaagttctccagctgggctctggtcaagctcggc
cccgccaagtcctacaacccgcacacgggcctggagcagcccggcttcctgcccggctcc
cacttcctgctgccgtgggacgtggtcatccgctgccggccggaggaggacgcgggcggc
gtcggggagccgctggacggtagcgtagcgtcctcgtcctcgtggccggcccccaacaag
gcgctggggggcaagcgcgggggggcggggtacctgtggcgcgggcgtcgtcgtgacgac
gtggcgcgggcgttcgtgggcttcgagtacgaggacagcaggggccggcgcttcctcagc
tcggcgcccgagaaggtggtgaaggtgctggggccgggcggcgccaaggagacggcctcg
cgggcgctcagctgcgacatgccgctctacgtcccctcgcccgcgcagggccgcggcctc
aagccgcactacgcccagctggcacgcctcttcatcgtggtgcccgacgcccctctggag
ctcacgctcagcccgcaggtgcagcctgggccggccccgtgtccggtgttccaccccgag
cagccggaggtggttctagcgccggacagcgtgtgggttctgcggttcccctacgcctac
gtgacggaacgcgggccctgctacccgcccaaggagaaccagccgctggccagccacagg
gttctgaggggcatcctccgcgccaacacagccagccccccaccgccgcaatga
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