Sardina pilchardus (sardine): 134082513
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Entry
134082513 CDS
T10667
Name
(RefSeq) collagen alpha-1(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
spil Sardina pilchardus (sardine)
Pathway
spil04510
Focal adhesion
spil04512
ECM-receptor interaction
spil04518
Integrin signaling
spil04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134082513
04518 Integrin signaling
134082513
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134082513
09142 Cell motility
04820 Cytoskeleton in muscle cells
134082513
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
spil04147
]
134082513
00536 Glycosaminoglycan binding proteins [BR:
spil00536
]
134082513
Exosome [BR:
spil04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
134082513
Glycosaminoglycan binding proteins [BR:
spil00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134082513
Hyaluronan
Extracellular matrix or blood plasma proteins
134082513
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Motif
Other DBs
NCBI-GeneID:
134082513
NCBI-ProteinID:
XP_062394258
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All DBs
Position
6:7981717..8061031
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AA seq
599 aa
AA seq
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MNIFGIVVLLSWMTTACSLSLNDVGQFYDCPVDVYIVLDTSESVALRANKPYGSFVDKIK
QFALDFVDQLNMRYYRCDRNLTWSVGVLHYSDEVKIMSELISVHEAGGKPMLKKAIQDIR
YIGKGTHTDCAISVATGQLMTGSPLHGNKYMVVVTDGHPFDGYKEPCGGISYAVSEARGM
EIKIFGVAITPDHLDNRLSAIATDVRYRYNLSATSNNPQVVRDTINTIVSTIYKDSETLC
CSNECKAPRGSAGPPGEAGDAGTPGRQGVAGKPGSLGAKGSAGDQGPPGHRGEKGDSGPT
GDRGPRGPAGQKGEKGHNGVDGKDGLMGEPGLVGLSGCKGDDGMEGEPGPPGQRGDPGSF
GGLGEKGGTGPVGSPGVSGVPGPSGPKGDSGPSGTRGNKGDRGDDGDFGAPGLSGSEGGK
GEKGLRGPPGIRGGPGEKGDPGPPGAQGHEGPSGEVGLVGADGVSGLKGYKGEPGPAGPV
GVKGTSGLSGPPGERGSTGERGEDGFPSEGQIGYAGFQGLPGLRGPAGSKGVRGFPGIKG
DTGLPGDRGDDNNLPGREGPAGPKGYPGLAGEQGTPGAEGPTGPDECEILEIIQKLCCK
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgaatatattcggcattgtggtattgctgtcatggatgaccactgcatgttccctcagt
ctaaatgatgttggacagttctatgattgtccagtggatgtctacattgtcttggacacg
tctgagagtgtggccctaagggccaacaagccttatggctcctttgtggacaagatcaag
cagtttgcacttgactttgtggaccagctgaatatgaggtactaccgctgcgaccgcaac
ctgacttggagtgtaggcgtcctgcactacagtgatgaggtgaagatcatgagcgagctc
attagtgtgcacgaggctggtggcaaacccatgctgaagaaagccattcaggacatccgc
tacattggcaagggcacgcacaccgactgtgccatttctgttgccacgggccaactcatg
accggctctcctctccacgggaacaaatacatggttgttgtaacagacggccacccgttc
gatggctacaaggagccttgcggggggatcagctatgctgtgtctgaggcccgaggcatg
gagatcaagatcttcggggttgccatcacccccgatcacttggacaatcgcctaagcgcc
atagcaactgatgtcaggtaccgttataacctctctgccacaagcaacaacccacaggtg
gtgagggacaccatcaacaccatcgtctccaccatttacaaggactcggaaacattgtgc
tgttcaaatgaatgcaaggcccctagaggatcggccgggccgcctggagaggcaggagat
gcgggaactccaggaaggcaaggtgttgcagggaagcctggtagtcttggagctaagggt
tcagcaggtgatcagggaccccctggacacagaggagagaagggtgacagtggaccgact
ggtgatagaggtccaagaggcccagctggacaaaagggagagaaagggcataatggcgtg
gatgggaaagatggactgatgggggagcctggactggttggtctgtcaggttgtaaagga
gatgatggcatggagggggagccaggtcctcctggacagagaggagatccagggtcattt
ggaggtctgggtgaaaagggaggaactggaccggttggatctcctggagtctctggggta
cctggacccagtgggccgaagggtgattcaggcccctctggcacaagaggaaacaagggc
gacaggggtgatgatggtgattttggtgctcctgggctttctggatctgagggtgggaaa
ggagagaagggactaagggggcctcccgggattcggggcggaccaggcgagaagggtgac
ccagggcctccaggagcccagggacatgagggcccctcgggagaagtaggattagtgggt
gcagatggagtttctggtctaaaaggctacaaaggagaaccaggccctgcgggtcctgtg
ggggtgaagggcaccagcggcctgtctgggccccctggagaacgtggctcaacgggagag
aggggagaagatggattcccaagtgaaggtcaaataggatacgcaggattccagggactc
cctggcctaagggggcctgctggatcaaagggtgtccgagggtttccaggcataaagggg
gatactgggttacccggagaccgcggggatgataacaacctcccaggacgagaagggcct
gcaggaccaaaaggttatcccggcttggcaggagagcaagggactcctggagcagagggt
cccaccgggccggatgagtgtgagattctggagataattcaaaaactatgctgtaagtga
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