Sardina pilchardus (sardine): 134094759
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Entry
134094759 CDS
T10667
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134094759 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spil03019
]
134094759 (cnot1)
Messenger RNA biogenesis [BR:
spil03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134094759 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
134094759 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
134094759
NCBI-ProteinID:
XP_062404379
LinkDB
All DBs
Position
10:2281023..2310117
Genome browser
AA seq
2391 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVCLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LTKVQEVIFGLALLNSSSSDLRGFAAQFVKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGFSGVGQEQIDVFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELTKTMMESSLAEFMQEVGYGFCASVDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSISTPGSGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFMIRDSKGLQIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMNPDVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYDQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
NVSQELSETILTMAANCSNVMNKARQPPPGVMSKVRAPSTSSLDAISPVQTLEPLSMGSL
SLGTPAAPHTPSMPGFPTTLGGSAFSNPQSPAKVFPPLTTQNPSATFGIGLSTQLPAPLG
IGSTLGMPAVNSDPFGTRKGTPSLNPPTFQQTDLSQVWPEANQHFSKEIDDEANSYFQRI
YNHPPHPTMSVDEVLEMLQRFKDSSIKREREVFNCMLRNLFEEYRFFPQYPDKELHITAC
LFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHL
ASIAHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPGSLALAQAQAQSQVPKAPQP
GQASTLVTTATTTTTAAKTTTITRPTAVFKKDVPPSINTTNIDTLLVATDQTERIVEPPE
NVQEKIAFIFNNLSQSNMSQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFL
DTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILYQ
DLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVVFRPLNPWTMAIMNVLAELHQEH
DLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKDTLKNLEEQLSAPKKETKPPEEMLPVV
TTESLLFAPAPSAPATTTACTATGPPTPQFSYHDINVYALAGLAPHINININIPLLQAHP
QLKQCVRQSIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVAAHHMMRN
LTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEAAGRIAQDNCELACCFI
QKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPK
QLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWATDDVAQIYDKCIADLEQHLHAI
PPALAMNPQTQALRSLLEAVVLARNSRDGIAALGLLQKAVEGLLDATSGADPDLLLRYRE
CHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHL
AQSMENGLHYMAVAFAMQLVKLLLVDERSVSHITEADLFHTIETLMRTSAHSRANAPEGL
PQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSA
AAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAASAA
IIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQ
QLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRI
FIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGTLRVLLVLLHDF
PEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILT
NFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVGGATLGPWKHLQQSDTSLDQVSNE
PGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYL
FLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLIT
FIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7176 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacaacatattgtgaatcgtcacggc
cctgaggcagacaggcatctacttcgctgtctcttctcgcacgtcgatttcagtggcgat
ggtaaaagtagtggcaaagacttccaccagacacagtttttgatccaggagtgtgtgtgt
ctgatcacaaagccaaactttatttcaacactctgttacgccattgacaatcccctgcac
tatcagaagagcttaaaaccatcaccccatttgtttactcagttgagtaaagtcctcaag
cttacaaaggttcaggaggtgatatttggcctcgctctccttaactccagcagctcagac
ctacgaggctttgctgcccagtttgtgaagcagaagcttccagacctccttcgctcatac
gtggacgccgaccttgggggcaaccaagaaggtggattccaggacatagcaatagaggtt
ctgcacctgcttctttcccatcttctgttcgggcagaagggctttagtggggttggacaa
gagcaaatcgacgtattcctcaaaacactgtgcagagattttccgcaggagcgttgtcct
gtggtgctcgcaccacttctgtaccctgagaaacgggacattctcatggataggatcttg
ccagactctggagagttaaccaagaccatgatggaaagttcgcttgccgagtttatgcag
gaagttggttatggcttctgtgcaagtgtggatgaatgccgaaacataatcctgcagtat
ggcgtgagggaggtcactgcaagccaggtggccagagtgctgggcatgatggcccgcaca
cactctggtctatctgatgggattcctctacagtccatttccacgcctggtagtggcata
tggagcgatgggaaggacaagagcgacggctctcaggcccacacctggaatgttgaagtt
ctaatagatgttgtcaaggaagttaatcctaatttgaacttcaaagaggtgacttatgag
ctggaccaccctgggtttatgatccgggacagcaagggattgcagattgtagtctacggg
attcagaggggacttggcatggaggtcttccctgtagatctcatttatagaccctggaag
catgcagaagggcagttgtctttcatccagcactccttgatgaatcctgatgtgttctgc
tttgctgattatccctgtcacactgtcgccattgacatcttgaaggctccccctgaagac
gataaccgggagatagctacctggaagagtctggacctggtggagagtctcctgcggctg
tctgaggtgggccagtacgaccaggtgaagcagctgttcagcttccccatcaagcactgc
ccagacatgctggtgctggcactgctgcagatcagcacgtcctggcacacgctgcgccac
gagctcatctccaccctcatgcccatcttcctggggaaccatcccaactctgccatcatc
ctgcactacgcctggcatggacagggccagtccccatccatccgccagctcatcatgcac
tcaatggcagagtggtatatgagaggggagcagtacgaccaagccaagctctcgcgcata
ttagacgtggctcaggacttaaagtctctctccatgctgctaaatggtactccatttgcc
tttgtaattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaatgg
ctgaccgataaaatccgagagcacggggagcccttcatccaagcctgcgtgacatttcta
aagagacgctgcccctccatcatgggcggtctagcacctgacaaggaccagcccaaaagt
gctcagcttcctcctgaaacactggctaccatgttagcgtgtctgcagtcttgtgctggg
aatgtgtcccaggagctttcggaaaccatcctgaccatggcggctaactgtagtaatgtg
atgaacaaagcgcgccagccaccgccgggagttatgtcaaaggtccgcgctccgagcacc
agcagtctcgacgccatctctccagtccagactctggaacctctttccatgggctccctg
agcctgggcacgccggccgccccccacaccccgagcatgccaggcttccccaccacattg
gggggctctgctttcagcaacccacagtctccagccaaggtctttcctcctctgaccacc
caaaaccccagtgccacttttggaataggtctctccacacaacttccagctccacttggt
attggctctacacttgggatgccagcggtcaacagtgacccatttggcactaggaagggc
accccgagtctgaacccacccacctttcagcagactgacctatctcaggtttggcctgag
gctaaccagcactttagtaaggaaattgatgatgaggccaacagctacttccagcgcatc
tataaccatcccccacaccccaccatgtctgttgatgaggtgctggagatgctgcagagg
tttaaggactccagtatcaagcgcgagcgtgaggtgttcaactgtatgctgaggaacctg
tttgaggagtatcgcttcttcccccagtacccagacaaagagctgcacatcacggcttgt
ctgtttgggggcatcattgagaagggcctagtcacatacatggctctggggctggcactg
agatatgttcttgaagccttaagaaaaccctttggatccaaaatgtattactttgggatt
gctgcactagataggtttaaaaataggctaaaggattatccacagtattgtcagcacttg
gcatccatagctcattttctccagttcccccatcatttacaagagtgtgtgcagtatatc
gagtatggacagcagtcacgggacccccctgtgaagatgcagggctccatcaccacacca
ggcagtctagcgctggcccaggctcaggcccagtcccaggtccccaaagccccccagcct
ggacaggccagcaccctggtcaccaccgctaccaccaccaccaccgctgccaaaaccacc
accatcaccaggcctactgctgtctttaagaaagatgtgccaccctctataaatacgacc
aacattgacacactgctggtggccactgatcaaacagagaggattgtagagccacctgag
aatgtgcaagagaaaattgccttcatcttcaacaacctctctcagtccaacatgtcccaa
aaggttgaggagctaaaggagaccgtaaaggaggagttcatgccttgggtatctcagtac
ctagtcatgaagagggtcagcattgagccaaatttccacagcttgtattccaacttcctg
gatacactgaagaacccagagtttgtgaagatggttctgaatgagacttaccggaacatc
aaggtccttcttacctctgacaaggcagctgctaacttttctgatcgctccctgctgaag
aacttgggacactggctggggatgattactcttgcaaaaaacaagcccatcttatatcag
gatttggaattgaaatccttgctgcttgaggcctatgtcaaaggccagcaggagttgctg
tatgtggtaccatttgttgccaaagtcctcgagtccagcctccgcagtgtggtcttcagg
cccctgaatccttggacaatggccattatgaatgtactggcagagctgcatcaggaacac
gacttaaagttgaacctgaagtttgaaattgaggttctgtgtaagaacttgtcactggac
atcaacgacctgaagccggggaacctgctgaaggacaaggacacactgaagaacctggag
gagcagctgtctgcaccaaagaaggagaccaagccgcccgaagagatgttgcctgtagtc
actacagaatctcttctgtttgcacctgctccctcagctccagccactaccacagcctgc
accgctaccggtccccccacgcctcagtttagctaccacgacatcaatgtgtatgcccta
gcagggctggccccgcacatcaacatcaacatcaatatccccctgttgcaggcccaccct
cagctgaagcagtgcgtgcggcagtccatcgagcgcgccgtgcaggagctggtgcacccc
gtggtggaccgctccatcaagatcgccatgaccacctgcgagcagatcgtcaggaaggac
tttgcgctggactcggaggagtcccgcatgcgcgtggcggcccatcacatgatgcgcaac
ctgaccgccggcatggccatgatcacctgcagagagccgctcctcatgagcatcgccacc
aacctcaagaacagcttcgctgcagcacttagggctcccacccctcagcagagagagatg
atggaggaggcggccggccgcattgcccaggacaactgcgagctggcgtgctgcttcatt
cagaagaccgccgtggagaaggccggtcctgagatggacaagcggctggccacagagttt
gagctgaggaagcacgcccggcaggagggccggcgctactgtgaccccgtggtgctcacc
taccaggccgagcgcatgccagagcagatcagactgaaggtgggtggtgtggacccaaag
cagctggctgtttatgaggagtttgcccgaaatgtccctggctttctcccaagcaatgat
ctgtctcagcccacaggattcctggcccagccaatgaagcagcaggcatgggccactgat
gacgtggctcagatctatgacaagtgcattgccgatctggagcagcacctgcatgccatc
cccccggccctggccatgaacccacagacccaggctctgcgcagcctgctggaggccgtg
gtgctcgcacgcaactcccgcgacggcatcgccgccctgggcctgctgcagaaggctgtg
gagggcttgctggatgccaccagcggtgctgatccagacctgctcctgcgctacagagaa
tgccacctgctggtgctcaaagcactccaggacggacgggcctacggcccacagtggtgc
aacaagcagatcaccaggtgcctgattgagtgccgtgacgagtacaaatacaatgtggag
gcagtggagctgctgatcagaaatcacctggtgaacatgcagcagtatgacctccacctg
gcacagtccatggagaacgggctgcattacatggccgtggcatttgccatgcagctggtc
aagctgctgctcgtagatgagcgcagtgtgagccacatcacggaggccgacctcttccac
accatcgagaccctgatgaggaccagcgcccactccagagctaatgccccagaagggctg
ccccagctgatggatgtggtccgctccaactatgaagccatgattgaccgcgctcacggc
ggccccaacttcatgatgcactctgggatctcccaggcatctgagtacgatgaccctcca
ggcctccgcgagaaggccgagtacctgctgagggagtgggtcaacctgtaccactctgca
gccgccggccgggacagtaccaaagccttctcggctttcgtgggccagatgcaccagcag
ggcatcctcaagacggacgacttgatcacgcgcttcttccgtctctgcacggagatgtgt
gtggagatcagctaccgggcgcaggccgagcagcagcacaaccctgcggccagcgccgcc
atcatcagagccaaatgctaccacaacctggacgcctttgtgcgcctcatcgccctactg
gtcaagcactctggagaggccaccaacacggtcaccaagatcaacctgctcaacaaagtg
ctgggcattgtggtgggcgttctgatccaggaccacgacgtgagacagactgagttccag
cagctgccttaccaccgcatcttcatcatgctgctgctggagctcaacgccccggagcac
gtgctggagaccatcaacttccagaccctcactgccttctgcaatacctttcacatcttg
aggcctacaaaagcccctggctttgtctacgcatggctggagctgatttctcacagaatc
ttcattgccaggatgctagcacacaccccacagcagaagggttggcctatgtatgctcag
ctgctcattgatctgttcaagtacttagcccccttcctgaggaatgtcgagctcaacaaa
cctatgcaaatcctgtacaagggcactctccgggtgcttctggtcctgctccatgatttc
ccagaattcctgtgtgactaccattatggcttctgtgacgtcatccctcccaactgcatc
cagctgcgaaacctgatcctgagtgccttcccccgcaacatgagacttccagaccccttc
acccccaatctgaaggtggatatgttgagtgaaattaacattgctccacgcatcctcact
aactttactggagtgatgccctcccaatttaagaaggatctcgactcctacctgaagacg
cgctctcctgtcaccttcctctctgagctgcgcagcaacctgcaggtagggggcgccact
ctgggtccctggaagcacttacagcaaagcgacacatccttagaccaggtgtccaatgag
cccggcaatcgctacaatattcagctgatcaatgcgctggtgttgtacgtgggcactcag
gccatcgctcacatccacaataagggcagcaccccctctatgagcaccatcacacactcg
gcacacatggacatcttccagaaccttgccgtggacctggacactgagggccgctatttg
ttcctgaacgcaatagccaaccagctccgctacccgaacagccacacacattacttcagc
tgcaccatgctttacttgtttgctgaagctaacacagaggccattcaggagcaaatcacc
agagtcctgctggagaggctgattgtgaacaggccgcacccatggggattgctcatcacc
ttcattgagctcatcaagaacccggcctttaagttctggagccacgactttgtccactgc
gctccggagatcgagaagttgttccagtcggtggctcagtgctgtatggggcagaagcag
gcccagcaggtgatggagggcacgggtgccagctag
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integrated database retrieval system
