Spirosoma sp. SC4-14: WBJ53_31160
Help
Entry
WBJ53_31160 CDS
T11499
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
spio Spirosoma sp. SC4-14
Pathway
spio03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spio00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
WBJ53_31160 (rpoB)
Enzymes [BR:
spio01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
WBJ53_31160 (rpoB)
Transcription machinery [BR:
spio03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
WBJ53_31160 (rpoB)
DNA repair and recombination proteins [BR:
spio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
WBJ53_31160 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WXC15437
LinkDB
All DBs
Position
complement(7533681..7537550)
Genome browser
AA seq
1289 aa
AA seq
DB search
MATNAKISTRKNFATIQPVIGYPDFLDIQVKSFKDFFQLDTPSNQRSEEGLFKVFQENFP
ISDSRENFKLEFIDYSVDPPKYSVDESIDRGLTYSVPLKAKLRLSNNDPDNEDFETIEQE
VFLGNIPYMTEKGSFVINGAERVIVSQLHRSPGVFFSMSKHTNGTKLYSARIIPFKGSWI
EFSTDVNNVMYAYIDRKKKFPVTTLLRAIGFGSDKDILDLFGLSEELPATPANLKKAIGR
RLAARVLRTWTEDFVDEDTGEVVSISRNEVLLERDSAISPDDIDVIMDSGQKSVILHKED
MNMADYNIIYNTLQKDSSNSEKEAVEQIYRQLRNADAPDEQTAREIIQSLFFSDKRYDLG
DVGRYRINKKLGLDISSDMKVLTTEDIVSIVKYLIGLINSKAVVDDIDHLSNRRVRTVGE
QLYAQFGVGLARMARTIKERMNVRDNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQT
NPLAEVTHKRRMSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVY
AKINSMGFIETPYRIIENGKVAMDKPVMYLTAEEEDTHYIAQANAGVDDSGNFHVDRLKA
RFEGDFPMAEPSNVTFMDIAPNQIVSVAASMIPFLEHDDANRALMGSNMQRQAVPLLRPE
APIVGTGLEGRVAVDSRTLVIAEADGVIEFVDSTKIVVRYELDDDQLAVTFDDDQKTYNL
IKFRRTNQDTCINLKPTVLKGQRVKKGDVLCEGYATQAGELALGRNMKVAFMPWQGYNFE
DAIVISERVVREDIFTSIHIEEFELEVRDTKRGEEELTSEIPNVSEETVRNLDENGIVRV
GTEVKEGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASKKAPPSLKGVVIDTKL
FARPAKEERGKHKDEIKALMKKYSRELTDFRARMIEKTVALLDGKTSAGVKHKFGDEIVS
KGVKFNRKNITDNLFPDKNPYRDESGYAVPEEANILIDLNLDGWTEDDKVNQMVVLLVKN
YNNRRSEITGRFKRERFTLEVGDELPAGIVKLAKVYIAKKRKLKVGDKMAGRHGNKGVVA
RIVRDEDMPFLEDGTKVDIVLNPLGVPSRMNLGQIYETVLAWAGQKLDRKYATPIFDGAT
EQQVADELNEAGLPSFGRTYLYNGLTGERFDQPVTVGIIYMLKLGHLVDDKMHARSIGPY
SLITQQPLGGKAQFGGQRFGEMEVWALEAFGASNILQEILTVKSDDVVGRAKAYEAIVKG
ENLPKPNIPESFNVLVHELRGLALEITLE
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
ttggctacaaacgcgaaaatcagtacgcgcaaaaattttgcgacgattcagccagtgatt
gggtatccggatttcctggatattcaagtaaaatccttcaaagattttttccagcttgac
acgccttctaaccagcgctcggaagagggcttgtttaaagtgtttcaggaaaatttccca
atttcagactcccgcgaaaactttaagctggagttcattgattactctgttgatccacca
aaatactcggtcgatgaatccattgatcgtggattaacctattcggtgccactgaaagcc
aaactgcgcttgtcgaacaatgatcctgataatgaggattttgagacaattgaacaggag
gtttttctgggaaatatcccatacatgaccgaaaagggatcattcgtgattaacggagct
gaacgggtgattgtttctcaattgcaccgttcgccgggcgtgttcttctcgatgagcaag
cacacaaacggaacaaaactctattcggcccggattattccatttaaagggtcgtggatt
gagttttcaaccgatgttaacaacgtcatgtatgcctacattgaccggaaaaagaaattc
ccggttacgacgttgctacgtgctatcggatttggctcagataaagatattctggatttg
tttggtttgtcagaagaactaccagcaacaccagcaaatctgaaaaaagccattggccgt
cggttagcagcccgcgtacttcgtacatggacggaagacttcgttgatgaagatacgggt
gaagtagtatcgatcagtcggaatgaagtgctgcttgagcgtgactctgccatttcgcct
gatgatattgatgtgattatggattcgggccaaaagtcagtgattctccataaggaggac
atgaacatggccgattacaatatcatttataatacgttgcagaaagatagctcgaactct
gaaaaagaggctgtcgagcaaatctatcggcaacttcggaatgccgacgcacccgatgag
caaaccgcccgtgaaattatccagagtctgttcttctcagataaacggtatgatttgggc
gatgtgggccgttaccgaattaataaaaagctcggtcttgacatttcgtcggatatgaag
gttctcacaacagaagatattgtttctattgtgaagtacctgattggtctgatcaactca
aaggccgtagttgatgatattgaccatctcagcaaccgccgtgttcggacggtaggtgag
cagctatacgcccagtttggcgttgggctggctcgtatggcgcggacgattaaggagcgg
atgaacgttcgggataacgaggatttcaaacccgttgatctgattaatgcccgtacgtta
tcgtcggttattaactcgttcttcggaaccaaccagttatcgcagtttatggaccaaacc
aatccgctggccgaagtgacgcataagcgtcggatgtcggcactgggaccggggggtcta
tcacgcgagcgggctggttttgaggttcgtgacgtacactacacgcactatggccggttg
tgtaccatcgaaaccccggaaggtccgaacatcggtctgatttcgtcgctgtgcgtttat
gctaaaatcaacagcatgggctttatcgaaacaccatatcgcattattgaaaacggtaag
gtggccatggataaacccgtaatgtatctgacggctgaagaagaagatacgcactacatt
gctcaggcaaatgccggggttgatgatagtggtaatttccatgttgatcgtctgaaggct
cgttttgaaggtgacttcccaatggctgaaccttcgaacgtaacctttatggatattgca
ccgaaccagattgtgtcggtggcggcttcgatgattcctttccttgagcatgacgacgct
aaccgcgccctgatgggatcgaacatgcaacgtcaggcggtgccattactccgtccggaa
gctccaattgtaggaacaggtctggaaggtcgggtggccgtagattcgcggacgctggta
attgctgaggcagatggtgttattgagtttgtcgattctacgaaaattgtcgttcgctat
gagctggatgatgatcagctagcggttacgttcgatgatgatcagaaaacatataacctc
atcaagttccgtcggacaaaccaggatacctgcattaacctgaagccaactgtgctgaaa
ggccagcgtgtgaagaaaggtgatgtgctgtgtgaaggctatgcaacacaggcaggggaa
ctggcactgggccggaacatgaaggttgcctttatgccatggcaagggtataactttgag
gatgcgatcgtgatttcggagcgtgttgtacgcgaagatattttcacctcaattcatatt
gaagagttcgaactggaagttcgtgatacgaaacgtggcgaagaggaattaacgtctgaa
atcccgaacgttagcgaagaaacagttcgtaacctcgatgaaaacgggattgttcgtgtt
ggtaccgaagtaaaagaaggtgatatcctgatcggtaagattactccgaaaggagaaagt
gatccaacaccggaagaaaaactgcttcgcgctatctttggcgataaagcgggtgatgta
aaagacgcatcgaagaaagcaccaccatctttaaaaggtgttgtgattgatacgaagctg
tttgctcgcccagccaaagaggagcgcggtaagcataaagatgaaatcaaggcactgatg
aaaaaatacagccgtgagttaaccgacttccgtgctcgtatgatcgaaaaaacagtagcg
ttacttgatggcaaaaccagtgccggggttaaacacaaatttggcgacgaaattgtgagc
aaaggggtgaagtttaaccggaaaaatattacggataacttattcccagacaaaaaccct
tatcgtgatgaaagtggttatgccgttccggaagaagcgaacatcctgattgatcttaat
ctggatggttggaccgaggatgataaagtaaaccaaatggtggttctgttagtgaaaaac
tacaataaccgccggagcgaaatcacaggtcgattcaaacgggagcgctttacgcttgag
gtaggcgatgagctgccagccggtattgtaaaacttgccaaagtatacattgccaaaaag
cgtaagctgaaagtgggggataaaatggctggtcgtcacggtaacaagggggttgttgcc
cggattgttcgtgacgaagatatgccattcctcgaagatggaacaaaagtggatatcgtt
ttgaatccgcttggcgtaccatcccggatgaacctcggtcagatttacgaaaccgtgttg
gcatgggcaggccagaaacttgatcggaagtatgcaacgccaatttttgacggggcgact
gaacaacaggtggctgatgaactgaatgaagccgggttgccatcctttggtcgtacatat
ctctacaacggtttgacaggtgagcgttttgatcagccggtaacggttggcatcatttat
atgcttaaactaggtcacctggtagatgataagatgcacgctcgttcgattgggccatac
tcgctcattactcagcagccgctgggtggtaaagcgcagtttggtggtcaacggtttgga
gaaatggaagtatgggcgctggaagcctttggggcttcgaacatcctacaggagatccta
accgttaaatcggatgacgttgttggccgtgcgaaggcatatgaggcaattgtgaaaggt
gaaaacctgccgaagccaaatattccggagtcgttcaatgtacttgtgcacgaattgcgc
ggtctggcccttgaaattacattagaataa
DBGET
integrated database retrieval system
