Stylophora pistillata (Smooth Cauliflower Coral): 111341230
Help
Entry
111341230 CDS
T05774
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
spis
Stylophora pistillata (Smooth Cauliflower Coral)
Pathway
spis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111341230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spis03019
]
111341230
Messenger RNA biogenesis [BR:
spis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111341230
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111341230
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
NOT1_connector
ARM_Cnot1
DUF3819
CNOT1_HEAT
CNOT1_1st
Msap1
HrpE
DUF6082
Motif
Other DBs
NCBI-GeneID:
111341230
NCBI-ProteinID:
XP_022803918
LinkDB
All DBs
Position
Unknown
AA seq
2461 aa
AA seq
DB search
MSTCVDSLSLALGQISFAVNDLTKKNYKATLKEIHELIEKHGYEAERHLFRCLFSFIDFA
GDGKNNGKDFLQCQFLIQECQLLVSKPNFSSILCYAIETPEHKQRTLRPSQQLLPNISRV
LKLNKVQEVIFGLSLLSSSNDELKNHAGQFVKLKLPDLLRSYTDADVGGVQEGGLTDVAI
EVLHRVLSHVIHGPSEQVGVGDDQVSAFLETLKKDFPKERVPVVLAPLLYPETKDISTDN
LLPEPSTPSKIVMEDDLADLMQEIGYSSCASVEDCRDTLSHFGVQDITPASVARVLGMMV
RTMYGLGEHVIVQNYGNSSVPLDKLGLSELTLGPAKWNKWNVEVFVQALRELIPLFNWRQ
VIQELDYPEFVVPSREGLELLLKACHRGLMEIFPVDVLYRTWTNTEGQLSWIQQILVNPD
LFCFADYPCHTVVIDLLKTAPEDDNREIATWKSLNLSETLLRLAEAGHYETVKSLFSFPL
KHCPDVLLLALLQINPLWLSLRNELVSQLIPVFLANHPNSGSVLHYVWHGQGQSASIRQL
VMQAMAEWYVKGDMDQGRLSRILDVAQDLKALSMLLNGSPFVFVIDLAALASRREYLKLD
KWLKDKLKEHQEEFAQSCIVFLRRRCPSLLGVAIDKELPKSAQLPQETVVTMLSCLQAFL
SQASPELAETISQMLTNHGPLVKTRPSAAVVGIPFKRQGSLDAGIPPNLSGQLDPLTGLN
IPQSPLPTTPATPTTQLPSFPPHPLTGSVLGPSSSLGAVGSIGTGLSQTVQKPQSQLGQL
PLTTPATSSSGLQSPSFSSSQNPLLPQLHQAGGLGQSMGGSVMDNARLLAGLGIQKQLGG
SLLQQQQQQQSALLSQSKNQADKLRQAASTADVAQVWPGMDQSFTKEVEDEANSYFQRIY
NHPPNPTISIDEVLEMLKKFKDSPVKKERDIFLCMLRNLFEEYRFFPQYPDKELHTTACL
FGGIIEQGLVTYMALGIALRYVLEALRKPFGSKMYMFGIAGLDRFKTRLKDYPHYCQHLA
SIPHFMEFPPALIEYIEYGQQSREPPMGSRNVQDPLASRLLNRATPTLTSVSGTSTFTST
AVSRPVPLGPSIPSIPLASGPVPSLPLVPSVSSTNTVVSSPSKPATTSAASPVRGKEPSI
ATANNIDTLLGATESSEIVQPPENIQDKVHFIFNNISQATLSQKADEMKNLVQNEYTLWV
SQYLVMKRASIEPNFHQLYLEFMESLDITNFSKEVLKETYRNIKVLLQSDKVPANFSDRS
LLKNLGHWLGLQTLARNKPIRMKDLDVKSLIMEAYFKGQQEMLYVVPFVAKIVESSAKSR
VFRPPNPWVMAIMSVLVELHQVPDLKLNLKFEVEVLCNTLSIEMKEIKASELLKDPEKLK
HIPHQLSSPEKDKQPAVSSSSTPTPTGSAQPGQPPVAPPPPQYSYQEINVASLAGLAPHI
QINAQIPLFQQHPHLKQFVRPSIERAVQELVHPVVERSIKICLTTAEMIVKKDFALDPEE
SRMRAAAHHMVRFMTAGMALITCREPLLISINNNLRSNFQAALRGANQQQKDLIEQAASV
ISEENTELACGFIQKTAVEKALPEMDKRLTTEFDVRRHARSEGRRYCDPVVLTYQAERMP
EQIRLKVGGVNASQTAVYEEFARSIPGFQPPTAGEAISTPPLPKPVQYEHGILGNAEAFM
PEEVVQILGKCAAEIEQHLHAIIAPPNNQHVVTIHSLLDAVVQARISRDNIAALRLLHKA
VEGLLEGVAPLASDAELSLRYRDCHLIVLRGLQDPRGYGPMWTARHVTKFVCDCPPDLKF
NVDAIDTLIRSHLINMREFDLHLVQCIDNGHNLQALHFAIQLAKYVSDEKHSPYVTENDL
YHTIEALTRIAHSRQNNEGLSSLLEASHNGPPSQSVGGGHHEMGDNKAPGGPTSLTSSVS
SGVSSHFQGYEDPPGLHEKVEYLLREWVRLCHQPGAGKESEKAFSTLVALLHQQGILRTD
DLITRFFRISTELCVEVTYRALGDHPNSPTMARAKCHNTLDAYCRLIALLVRHSGDASNN
VTKINLLSRVLGTVATVLFQDHEIRHTEFQQLPYHRIFIMLLVELNQPEPILEAINFQVL
QTFSTVFHALRPSRAPGFAYAWLELISHRLLMSKLLLNTPQQKGWVLFQQLIIDLFKFLA
PFLRNAELAKQTHLLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPNCIQMRNLILSAF
PRNMRLPDPFTPNLKVDLLTDIAHSPRILTNFASAIQPATFKKELDSYLKTRAPVTFLTE
LRTHLQVSNEAGTRYNVPLMNALVLYVGTQAITYIHSKSGTPSMSTITHSSHMDIFQNLA
VDLDTEGRYLFLNAIANQLRYPNSHTHYFSCVLLYLFAEANTEAIQEQITRVLLERLIVN
RPHPWGLLITFIELIKNHQYKFWTHEFVHCAPEIEKLFESVARSCMQQKQAPPRDNAESR
E
NT seq
7386 nt
NT seq
+upstream
nt +downstream
nt
atgagtacatgtgtagactctttgtctctagctctcgggcaaattagctttgcagtcaac
gatttaacaaaaaagaattacaaagcgaccctgaaggaaatacatgagcttattgaaaaa
catgggtatgaggcagagcgtcacttattccgttgcttattctcctttattgactttgct
ggtgatggtaagaacaatggcaaggacttccttcagtgccagttcctgattcaagaatgc
cagctgcttgtttccaaacccaacttttcttccattttgtgttacgcaattgagacacca
gaacataagcaaaggacactgagaccttctcaacaattactgccaaatattagcagagta
ttgaagctcaacaaagtgcaagaggtaatctttggcctaagccttttgagttcctcaaat
gatgaattgaaaaaccatgctggccaatttgtcaaactcaagttgcctgaccttttaaga
tcatacactgatgcagatgttggaggtgtacaagaaggaggcttgactgatgttgctatt
gaagtgttacatcgtgttttgtctcatgtgatccatggaccaagcgaacaggttggagtt
ggagatgatcaagtgtctgccttcctggaaacactgaagaaagattttcctaaagaacgt
gtgccagtagtccttgctcctcttctctatcctgagacaaaggatatttcaactgacaac
cttcttccagagccatcaactccttcaaaaatagtgatggaagatgatttggctgatctt
atgcaggaaataggatattcaagttgtgcaagtgttgaagactgtcgggataccctaagc
cactttggtgtccaagacatcacaccagcatcagtagccagagtactaggaatgatggtc
agaacaatgtatggtctgggtgaacatgtgattgtacagaattatggaaatagttcagtt
ccattggacaaattgggactcagtgaactcactttggggcctgctaaatggaataaatgg
aatgtggaagtttttgtccaggctctgagggaattgattccattgttcaactggcgtcaa
gtgattcaagagttagattatcctgagtttgttgttccaagccgggagggtcttgagcta
ttgttaaaggcttgccacaggggactgatggagatatttccagtggatgttctctacaga
acatggaccaacacagaaggccagctttcctggatccaacagatccttgtcaatccagat
ctgttctgttttgctgactatccttgtcacacagtagtaatagacctgctgaagacagct
cctgaggatgataacagggagattgcaacatggaaatctctcaatctctcagaaacattg
ttaagactagcagaggctggtcactatgagacagtaaaatctttgtttagttttcctttg
aaacactgcccagatgttctgctgcttgccctgctgcagataaatccactatggctttca
cttcgcaacgagcttgtgtcacaactgatcccagtgtttttggctaaccatcccaactct
ggcagtgttttgcattatgtgtggcatgggcagggccaatcagcatcaattcgccaactt
gtgatgcaagccatggcagaatggtacgtgaaaggagacatggaccaaggaaggctgtcc
aggatcttggatgtggctcaggaccttaaggccctgtccatgcttctcaatggatctcca
tttgtgtttgtgattgaccttgctgctctagcatcacgccgtgaatacctcaagctggat
aagtggttaaaagacaagcttaaagagcatcaggaggaatttgcgcaatcatgtattgtt
ttcttgagacgtcgctgtccctctttgcttggggtagctattgacaaagaacttccaaag
agtgctcagcttcctcaggagacagtggttactatgctttcatgtcttcaggcattcttg
agtcaagcatctccagaacttgcagaaaccatcagtcaaatgttgaccaaccatggtccc
ttggtgaagacacgacccagtgctgctgtagttggaattccattcaagagacaaggaagc
ttggatgcaggaatacctccaaacctttctggccagcttgatcctctgacagggctcaac
atccctcagtcacctctccctacaactccagccacacccactacccaactaccttcattt
ccgccacacccccttactggttccgtacttggaccctcaagcagcctaggggctgttggt
agcataggcacaggtctgtcccagacagtacaaaagccacagtctcagcttggacagctt
cctcttacaacaccagcaacatcaagctcagggctacagtcaccaagtttcagctcttca
cagaatcctttgttgccgcagcttcaccaagcaggtggactgggacagtctatgggtgga
tcggtaatggacaacgctaggctcttagcaggtcttggaatccagaaacagcttgggggc
tctttactacagcaacaacaacaacagcaaagtgctctcctctctcagtcaaaaaatcag
gcagataaattacgacaagctgcttccacagcagatgtagctcaagtgtggccaggtatg
gatcaatcctttacaaaagaagtagaggatgaggcaaactcatattttcagaggatttac
aatcatcccccgaatcctaccatcagcattgatgaggtgctcgaaatgctgaagaaattc
aaagattcacctgtcaaaaaggagagggatattttcctttgcatgcttcggaacttgttt
gaagagtacagattctttccccagtatccagacaaagagcttcacacaacagcttgcttg
tttggaggaataattgaacagggacttgtgacgtacatggcgcttggtattgctctgcgt
tatgtcctggaggctttgaggaaaccatttggctcaaaaatgtacatgtttggaatagct
gggctggatagattcaagacaaggctcaaagactatccgcactactgccagcatcttgca
tcaatcccgcattttatggaatttccgcccgcgttaatagagtacattgagtacggacag
caatccagagagccaccaatgggcagcagaaatgtacaggaccctttggcgtcaagactg
ctcaaccgagctactccaaccctgaccagtgtatcaggcacctcgaccttcaccagcaca
gcagtgagcaggccggttccactaggtccttctattccttccatcccgttggcttcagga
ccagtgccatcattacctttagttccctctgtctcttctacgaacactgttgtatcgtcg
ccttcgaaaccagccacaacatcagccgcatctcccgtccgaggtaaggaaccatccatt
gccactgcaaacaacattgacaccctactaggtgccacagaatcaagtgaaatagtccaa
ccaccggaaaatattcaagataaagtacattttatattcaacaatatctctcaggcgact
ctttcacagaaggctgacgaaatgaaaaatcttgtccagaatgagtacactttgtgggta
tcacaatacttggttatgaagagagcgagcattgaacctaatttccaccagctgtacttg
gagtttatggaatcactggacattacaaatttttccaaggaagtgctcaaggaaacatac
agaaacatcaaggtactactacaatcagacaaagtcccggcaaacttctctgatcgatcg
ttgctaaagaacctcggccactggttgggactgcagaccttggccagaaacaagccaatc
cgtatgaaggatcttgatgttaagtcgttgattatggaagcttactttaaaggacagcag
gaaatgctctatgttgttccatttgtggcgaaaatcgtagaatcatcagctaagagtaga
gtttttaggccgcccaacccgtgggtgatggccatcatgtcagtgctggttgagctgcat
caagtgcctgacttaaagctgaatcttaaatttgaagtagaagtcctctgcaacacgcta
tccattgagatgaaggaaatcaaagcgtcagagctgctcaaggatcctgaaaaactgaag
cacatccctcatcagttgtcttctcccgaaaaagacaaacaacctgcggtgagtagcagc
tccacccctacccccacgggatcagcccaaccaggacagcctcctgtggcacctccaccc
cctcagtattcatatcaagagatcaatgtagcttcactcgcagggctggcgcctcacatt
cagattaacgcacagatcccactgttccagcagcaccctcatcttaaacagtttgtacgt
ccatccattgagagagctgtgcaagagctagttcatccagtggtagagagatccattaag
atttgtcttacaacagctgagatgatagtgaagaaggattttgccttggatcctgaagag
tcccggatgagagccgccgcccatcacatggtccgcttcatgacagcaggcatggctctg
atcacgtgcagggaaccgctccttatcagcatcaataacaatcttagatcgaacttccag
gctgctctgagaggtgctaaccagcaacaaaaggatttgattgaacaagctgcatctgtc
atcagtgaggaaaacacggaactggcgtgtgggttcattcagaagacagcagtagagaaa
gctttacccgagatggacaaacgactcacaacagaatttgacgttcgtcgccatgctcgc
agtgagggacggcggtactgtgatccagtggttttaacatatcaggcagagcgcatgcct
gaacagattcgactaaaggttggtggagtgaacgccagtcaaacagctgtgtatgaagag
tttgcacgaagtatccctggattccaacctcctactgcaggcgaagctatctccactcca
cctctgccaaaacctgtccagtacgaacacggaatactcggcaatgctgaggcctttatg
cctgaggaggtggtacagattctgggcaagtgcgcggcagaaatcgaacaacatcttcac
gccataatcgctccacccaacaatcagcatgtcgtcactatacacagcctgctggacgct
gtagtgcaggcgcggatatcaagagacaacattgctgctctgaggctgttacacaaggct
gtagaaggtcttcttgaaggtgttgcaccattagcttctgatgcagagttgtctctaaga
tatcgtgattgtcacctgatagtgcttagaggacttcaagaccccagaggatacggaccc
atgtggaccgctcgacacgtaaccaagttcgtgtgtgattgtcctcctgacttgaagttt
aacgtagacgccatcgacactctgatccgtagccacttgatcaacatgagagagtttgat
cttcatctcgttcagtgtattgacaacggtcacaatcttcaggcacttcactttgctatt
cagcttgctaaatacgtatccgatgagaagcacagcccgtatgttacagagaatgatctt
tatcacacgattgaagctctaacgaggatagctcacagcaggcagaataatgaaggtttg
tcgtctttgttggaagcctcgcataatggccctccttcccagtctgtcggcggagggcat
cacgaaatgggtgacaacaaggcacctggagggcctacatctttgacctctagtgtgtca
tcaggtgtgagctcccatttccaaggttacgaggatccacctggtctgcacgaaaaggtg
gagtacttgttgagagagtgggttcgcctctgccaccagcctggagcaggtaaggaaagc
gagaaggccttctcaacattggttgccctgcttcatcagcaaggcattcttagaactgat
gatctaatcacaaggtttttccgaatcagtactgagctgtgtgtggaggtgacgtacaga
gctttgggagatcatcccaacagccccaccatggcgcgggctaagtgtcacaacaccctg
gatgcttactgtcgtttgatagcgctcctcgtacgtcactcaggagatgcctcgaacaac
gtgacaaagattaacctcctcagcagagtccttggcacagtcgctacggtgttgttccaa
gatcacgagattcgtcacacagagtttcaacagctgccttatcacagaatttttattatg
ctgcttgtggaactaaaccaaccagagcccatcctcgaggctataaatttccaggtcctg
caaacttttagcactgtgttccatgccctccgaccgtcccgtgcaccaggattcgcgtac
gcctggctcgagctcatatcgcatcgtctcctgatgtccaagctgcttctaaacacaccg
cagcagaagggctgggttttgtttcagcagctgataatcgatcttttcaagtttttggct
ccattcctgagaaacgccgagttagctaaacagactcatttgctttacaagggtacatta
cgcgtgttgttggtcctgcttcatgacttcccagagttcctatgtgactaccacttcagt
ttctgtgacgtcatccctcccaactgtattcagatgaggaatcttatccttagtgctttc
cctcgaaacatgagactcccagaccccttcacgccaaacttgaaggttgatttgttgact
gacatcgctcattcgccacgtatcctgacgaactttgcctctgctatccagcctgccacc
ttcaagaaggagttagattcgtatctgaagacgcgtgctccagtaaccttcctgacggaa
ctcagaacgcatttgcaggtatccaatgaagctggaacgcgctacaacgttcctttgatg
aatgccttggtcctttatgtcggaacccaagccattacttatattcacagtaagagtggt
accccatccatgtcaaccatcactcattcgtcgcatatggacatcttccaaaatctggct
gtggatttggatactgaaggtcgatacctattcttaaatgcgattgcaaatcagctgcgg
tacccgaacagccacactcattacttcagttgtgttctgctttatctcttcgctgaagca
aacacagaagccattcaggaacagatcaccagagtattgttggagcggttgatcgtgaac
cgacctcatccgtggggactgctgatcaccttcattgagctcataaagaatcaccagtac
aaattctggacgcacgaatttgttcactgtgccccagagatcgaaaagttgttcgagtct
gttgctcgcagctgtatgcagcagaaacaggcaccgccccgagataacgctgagagccga
gagtga
DBGET
integrated database retrieval system
