Sphingomonas sp. KC8: KC8_12585
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Entry
KC8_12585 CDS
T04987
Name
(GenBank) tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
KO
K03495
tRNA uridine 5-carboxymethylaminomethyl modification enzyme
Organism
spkc
Sphingomonas sp. KC8
Brite
KEGG Orthology (KO) [BR:
spkc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spkc03016
]
KC8_12585
03036 Chromosome and associated proteins [BR:
spkc03036
]
KC8_12585
Transfer RNA biogenesis [BR:
spkc03016
]
Eukaryotic type
tRNA modification factors
Other tRNA modification factors
KC8_12585
Prokaryotic type
KC8_12585
Chromosome and associated proteins [BR:
spkc03036
]
Prokaryotic type
Chromosome partitioning proteins
Other chromosome partitioning proteins
KC8_12585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GIDA
SAM_GIDA_C
FAD_oxidored
GIDA_C_1st
Pyr_redox_2
Pyr_redox
AlaDh_PNT_C
FAD_binding_2
DAO
NAD_binding_8
HI0933_like
Pyr_redox_3
NAD_binding_9
Motif
Other DBs
NCBI-ProteinID:
ARS28110
LinkDB
All DBs
Position
complement(2636582..2638444)
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AA seq
620 aa
AA seq
DB search
MSDSFDIIVVGGGHAGTEAAAAAARMGARVALVSMRRDMIGAMSCNPAIGGLGKGHLVRE
VDACDGLIGRAADHAAIHYRMLNGSKGAAVQGPRVQADRKRYTAAIHAMLADLPTLSIVE
GEVASLILQGIDDRDVRGIVLADGRSLPARAVVLATGTFLNARLHFGMDSVVGGRVGEGA
SVLLADQLRQQLALPIARLKTGTPPRIDGRTIDWAALERQESDSDPWTMSPMGPGRVAPQ
LFCAITRTTTETHAIIRAGLDRSPLYAGVIEGQGPRYCPSIEDKVVRFGDRDGHQIFLEP
EGLDTHLVYPNGISTSLPIDVQDAMVRSIAGLQRAVIVQPGYAVEYDHIDPRALDSRLAV
RGVSGLFLAGQINGTTGYEEAAAQGLVAGLSAAAEVADRSPMRFDRTESYIGVMVDDLVL
HGVTEPYRMLTARAEYRLRLRADNAHARLTGAAIAAGAVGADRREWFERRSAMLTQIAAA
TTARVSADRMITAGAEVTRDGSVHSLAEWLRFPGVGREVLLSLAPELAVVPTDVIDEFRT
DAHYAPYLARQEDEIRRLRADEAVLLPGDLDYEGIPGLSNEMVELLGKARPETIGAAARM
RGITPAALAAILVQVRRRAA
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacagtttcgatatcatcgtcgtcggtggcggccacgccggtactgaagccgct
gccgctgccgcccgcatgggtgctcgcgttgcactggtatcgatgcggcgggacatgatc
ggcgcgatgtcctgcaatcctgcgatcggcggcctcggcaagggacatctggtccgcgaa
gttgatgcgtgcgacgggctgatcggccgcgccgccgatcatgcggcgatccattatcgg
atgctcaatggcagcaagggtgcggcggtacaggggccgcgcgtccaggccgaccggaaa
cgctataccgccgccatccacgcgatgttggccgatctgccaaccttatcgattgtggaa
ggcgaggtcgcgtcattgatcctgcaggggatcgatgatcgcgatgtccggggtatcgtg
ctggccgatggccgttcgctaccggcgcgcgccgtggtgctcgccacaggaaccttcctc
aacgcccgcctccatttcggaatggatagcgtcgttggcggtcgcgtcggggaaggggct
tcggttcttctggcggatcaattgcgtcagcaactcgctttgccgattgcccgcctgaag
acgggtacgccgccgcgcatcgatggccgcacgatcgactgggcggcgctggaacggcag
gaatccgatagcgatccgtggacgatgtcgcccatggggccgggccgggttgcgccgcag
ctattctgcgcgatcacgcgcaccacaacggaaacacatgcgatcattcgcgcgggcctc
gatcgttcgccgctttatgccggggtgatcgaagggcaggggccgcgttactgcccgtcg
atcgaagacaaggtggtccgtttcggcgatcgcgacgggcaccagatctttctcgaacct
gaaggcctcgacacgcatctcgtttaccccaatggcatttccacatcgcttcccatcgat
gtgcaggatgccatggtgcgcagcatcgccgggcttcagcgcgccgtgatcgtgcaaccg
ggttatgccgtcgaatatgatcatatcgatccgcgcgcgctggacagccggcttgccgta
cgcggggtgagcggattgtttctggccgggcagatcaacggcacgaccggctatgaggag
gccgccgcccaggggctggtcgccgggctgtctgcggcggccgaggtggcggatcggtcg
ccgatgcggttcgatcgcaccgaaagctatattggcgtgatggtcgacgatctggtcctc
cacggcgtgaccgaaccctatcggatgctgacggcgcgcgcggaatatcgattgcggctt
cgggccgacaacgcccatgcccgcctgaccggggcggcgatcgcggcaggagcggtgggc
gccgatcgccgggaatggtttgaacggcgtagcgcgatgctcacccagatcgccgcggcg
acgaccgcgcgtgtttccgccgaccgcatgatcacggccggtgcggaggttacgcgcgac
ggtagcgtccatagccttgccgagtggttgcgctttccgggtgtgggacgagaggttttg
ctaagcctcgcgcccgaactggccgtggtgccgacggatgtgatcgacgaatttcgcacc
gatgcgcactacgccccctatcttgcgcggcaggaggatgagatccgtcgtttgcgggcc
gacgaggccgtgctgttgcccggcgatctcgattatgaagggatacccggcctgtcgaac
gaaatggtcgaactgctgggcaaggcccgcccggaaacgatcggcgcggccgcccggatg
cgcggaatcacgcccgctgcgttggccgcgattctggtccaggtgcggcggcgcgcggca
tga
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