Streptomyces pluripotens: LK06_022710
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Entry
LK06_022710 CDS
T04845
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
splu
Streptomyces pluripotens
Pathway
splu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
splu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LK06_022710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
splu03400
]
LK06_022710
Enzymes [BR:
splu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LK06_022710
DNA repair and recombination proteins [BR:
splu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LK06_022710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
SPOR
Motif
Other DBs
NCBI-ProteinID:
ARP72299
UniProt:
A0A221P3C2
LinkDB
All DBs
Position
complement(5047139..5048131)
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AA seq
330 aa
AA seq
DB search
MTPITEVEGRRIALSNLEKVLYPETGFTKAELLHYYATTATALLPHLRDRAVSFLRYPDG
PEGQRFFTKNVPPGTPEWVMTAEVPRSSLEGPARMVVIQDLPSLVWAANLVPEFHTHQWL
VQRPDEADRLVLDLDPGTPANIVHCCEVALWLRERLAADGIEAYPKSAGSKGLHLLAATH
GSSPERASEYAKLLALEAERAMPGLVVHRMTKSLRPGKVFVDWSQNAARKTTAAPYTLRA
RGTPLVSAPVTWEEVVDCRRPEQLEFRADDIASRLRDYGDLMAGLLDAERSAELPRPSGA
GRAAPKKAEGTEGDRKGGKGRAGPRGADET
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgacgcccatcacagaggtggaggggcggcggatcgcgctcagcaacctggagaaggtg
ctgtatccggagacgggcttcaccaaggcagagctgctgcactactacgcgaccaccgcc
accgccctgctgccgcacctgcgcgaccgcgcggtctccttcctgcgctatccggacggt
ccggagggacagcggttcttcaccaagaacgttccaccgggtacgcccgagtgggtcatg
acggccgaggtgccgcggtcctcgctcgaaggacccgcccggatggtggtgatccaggac
ctaccgagtctggtctgggcggcgaacctggtgcccgagttccacacgcaccagtggttg
gtccagcgcccggacgaggccgaccggctcgtcctcgacctcgatccgggcactcccgcg
aacatcgtccactgctgcgaggtcgccctgtggctgcgggagcggctggcggcggacggg
atcgaggcgtacccgaagtcagcggggtcgaagggactgcacctgctggcggcaacacac
ggcagttcccccgaacgcgcgtccgagtacgcgaagctactggcgctggaggccgagcgg
gcgatgcccgggctggtggtgcaccggatgacgaagagcctcaggccggggaaggtgttc
gtcgactggagccagaacgcggcccgcaagaccacggccgccccctacaccctgcgcgcc
cgtgggaccccactggtgtccgcgccggtgacgtgggaggaggtcgtggactgccgccgc
ccggaacagctggagttccgcgcggacgacatcgcctcacgtctgcgcgactacggcgac
ctgatggcgggcctcctggacgcggagcgatcggccgagctgccccgtccctccggagcg
ggccgagcagcaccgaagaaggccgaagggacggaaggagaccgaaagggcgggaagggc
cgagcggggccgaggggggccgacgaaacctga
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