Sphingomonas sp. M1-B02: OKW87_06280
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Entry
OKW87_06280 CDS
T11063
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
spmb Sphingomonas sp. M1-B02
Pathway
spmb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spmb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OKW87_06280 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spmb03021
]
OKW87_06280 (rpoB)
03400 DNA repair and recombination proteins [BR:
spmb03400
]
OKW87_06280 (rpoB)
Enzymes [BR:
spmb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OKW87_06280 (rpoB)
Transcription machinery [BR:
spmb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OKW87_06280 (rpoB)
DNA repair and recombination proteins [BR:
spmb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OKW87_06280 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
B
Motif
Other DBs
NCBI-ProteinID:
UZK67436
LinkDB
All DBs
Position
1310073..1314257
Genome browser
AA seq
1394 aa
AA seq
DB search
MATKAIEGGTVKQRGGEGGTMKRRIRKVFGNIHEVVQMPNLIEVQRESYEQFLRSDPSIG
YVSGLEKTLRSVFPIRDFAGTAELDFVNYELEPPKFDVEECRQRGITYAAPMRVTLRLIV
FEVDPDTEARSVLDIKEQDVYMGDMPLMTGNGTFFINGTERVIVSQMHRSPGVLFDHDRG
KTHASGKYLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTTLLYALGLNSEDILN
YFYGRVVYVRGQGGWQVPFVVENWRGQKPMFDIVDAKSGEVIFPSGQKISPRAANKAQKD
GLEMLLIPTEEIFGRYSAYDLINEATGEIYIEAGDEISAENLEALDKAGIERIELLDIDH
VTTGPWIRNTLKVDKAEEREQALSDIYRVMRPGEPPTLETAESLFSGLFFDPERYDLSAV
GRVKLNMRLDLDVEDTVTTLRTEDILEVVKTLVNLKDGKGEVDDIDNLGNRRVRSVGELL
ENQYRVGLLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNP
LSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSR
VNKYGFIETPYRKIIDGKVTNDVVYLSAMEEAKHTIAQASAELDEENRFTEELVSSRQAG
EFLMAFPDQITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVQAEAPFV
GTGMEETVARDSGAAIGAKRAGVVDQVDATRIVIRASGEVDANASGVDIYTLMKFQRSNQ
NTCINQRPLVKVGDVIAAGDIIADGPSTEFGELALGRNALVAFMPWNGYNYEDSILISER
IVKDDVFTSIHIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGD
ILAGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVEVRVFNRHGIDK
DERAMAIEREEIERLKKDSDDERNILNRATWSRLKEMLIGQVATAAPKGLKKGATIDADL
LDSVDRHEWWKFSVADDGMQSNLEAVKGQYDEAVSRIKEKFEDRREKLERGDELPPGVLK
MVKVFVAVKRKLQPGDKMAGRHGNKGVISRILPAEDMPFLADGTPVDLVLNPLGVPSRMN
VGQIFETHLGWAARELGHQVGRALEDWREANPDAKPGDMPEAVKARLLEVYGEHYADDIQ
GRDSTQIIELANNLKTGIPMGTPVFDGAREADVSAMLELAGLDTSGQSDLFDGRTGDQFD
RKVTVGIIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYG
AAYTLQEMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELKND
EPGFDSDGVQIAAE
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atggctaccaaggcaatcgaaggcggcactgtaaagcagcgcggcggcgaaggcggcacg
atgaagcgccgcatccgcaaggtgttcggcaacatccacgaagtcgtgcagatgccgaac
ctgatcgaggttcagcgcgaatcctacgagcagttcctgcgctccgatccgtcgatcggc
tatgtctcgggcctcgagaagacgctgcgctcggttttcccgatccgcgatttcgccggc
accgccgagctcgacttcgtcaattacgagctcgagccgccgaagttcgacgtcgaggaa
tgccgtcagcgcgggatcacctatgcggcgccgatgcgcgttaccctgcgcctgatcgtg
ttcgaggtggatcccgatacggaagcccgttcggtcctcgatatcaaggagcaggatgtc
tatatgggcgacatgcccctgatgacgggcaacggcaccttcttcatcaacggcaccgag
cgcgtcatcgtcagccagatgcaccgttcgccgggcgtcctgttcgatcatgatcgcggc
aagacccacgccagcggcaagtatctcttcgccgcgcgcgtcatcccctatcgcggctcg
tggctcgatttcgagttcgacgcgaaggacatcgtcaacgtccgcatcgatcgcaagcgc
aagctgccggtcacgacgctgctctatgcgctgggcctgaacagcgaggacatcctcaac
tatttctacggtcgcgtggtctatgtccgcggccagggcggctggcaggttccgttcgtc
gtcgagaattggcgcggccagaagccgatgttcgacatcgtcgacgccaagtcgggcgaa
gtgatcttcccgtcgggccagaagatctccccgcgcgccgcgaacaaggcgcagaaggac
gggctcgagatgctgctgatcccgaccgaggaaatcttcggtcgctacagcgcctatgac
ctgatcaacgaagccaccggcgaaatctatatcgaagccggcgacgagatttcggccgag
aatctcgaggcgctggacaaggccggcatcgagcggatcgaactgctcgacatcgatcat
gtcaccacgggtccgtggatccgcaacacgctcaaggtcgacaaggccgaggagcgcgag
caggcattgtccgacatctaccgcgtcatgcgccccggcgagccgccgacgctggagacc
gcggagtcgctgttctcgggcttgttcttcgatcccgagcgctacgacctttcggccgtg
ggccgcgtcaagctcaacatgcgcctcgacctcgacgtcgaggacacggtgacgacgctg
cgcaccgaggatattctcgaggtcgtcaagacgctcgtgaacctcaaggacggcaagggc
gaagtcgacgacatcgacaatctcggcaaccgccgcgtgcgttcggtgggcgaattgctc
gagaaccagtatcgcgtcggcctgctccgcatggagcgcgccgttaaggagcggatgagc
tcggtcgacgtgtccacggtcatgccgaacgacctcatcaacgcgaagccggcagtcgcc
gcggttcgcgagttcttcggctcgtcgcagctctcgcagttcatggaccagaccaatccg
ttgtcggaagtcacccacaagcgccgcgtgtcggcgcttgggccaggtggtctgacgcgt
gagcgcgcaggcttcgaagtccgcgacgtgcatccgacccattatggccgcatctgcccg
atcgagacgccggaaggcccgaacatcggcctgatcaactcgctggccagcttcagccgc
gtcaacaagtacggcttcatcgagacgccgtaccgcaagatcatcgacggcaaggtgacc
aacgacgtcgtctatctgtcggcgatggaagaggcgaagcacacgatcgcgcaggcatcg
gccgagctcgacgaggaaaaccgcttcaccgaggagctggtctcgtcgcgtcaggcgggc
gaattcctgatggctttccccgatcagatcacgctgatggacgtcagccccaagcagctc
gtctcggttgcagcatcgctcattccgttcctggaaaacgatgacgccaaccgcgcgctg
atgggctcgaacatgcagcggcaggccgtgccgctcgtccaggccgaggcgccgttcgtc
ggcaccggcatggaagagacggttgcgcgcgattcgggcgccgcgatcggcgccaagcgc
gccggcgtggtcgatcaggtcgacgcgacccgcatcgtcatccgggcttcgggcgaagtc
gatgccaatgccagcggcgtcgacatctacacgctgatgaagttccagcgctcgaaccag
aacacctgcatcaaccagcgtccgctggtgaaggtgggcgacgtgatcgccgccggcgac
atcatcgccgacggtccgtcgaccgagttcggcgagctggcgctgggccgcaacgcgctc
gtcgcgttcatgccctggaacggctataattatgaggattcaatcctcatcagcgagcgc
atcgtcaaggacgacgtcttcacttcgatccacatcgaagagtttgaagtcatggcccgc
gacaccaagctcgggccggaggacatcacccgcgacatcccgaacgtcggcgaggaagca
ctccgcaacctcgacgaagcgggcatcgtctatatcggtgccgaggtcgagcccggcgat
attctcgccggcaagatcacgccgaagggtgaatcgccgatgacgccggaggaaaagctc
ctccgcgccatcttcggcgagaaggcctcggacgtgcgcgatacttcgctgcggctgccc
ccgggcgtcgccggcaccgtcgtcgaagtgcgcgtgttcaatcgccacggcatcgacaag
gacgagcgcgcgatggcgatcgagcgcgaggaaatcgagcggctgaagaaggactcggac
gacgagcgcaacatcctgaaccgcgcgacctggtcgcgcctgaaggagatgctcatcggc
caggtcgcgaccgcggcgccgaagggtctcaagaagggcgccacgatcgacgccgacctg
ctcgacagcgtcgaccggcacgaatggtggaaattctctgtggccgacgacggcatgcag
tcgaacctcgaagccgtgaagggccagtatgatgaggccgtgagccgcatcaaggagaag
ttcgaggatcgccgcgagaagctggagcggggcgacgagcttccgccgggcgtgctcaag
atggtcaaggtcttcgtcgcggtgaagcgcaagctgcagccgggcgacaagatggccggc
cgtcacggcaacaagggcgtgatctcgcggatcctgccggcggaggacatgccgttcctc
gccgacggaacccccgtcgatctcgtgctgaacccgctcggcgtgccttcgcggatgaac
gtcggtcagatcttcgagacccatctgggctgggccgcgcgcgagctgggtcaccaggtc
ggccgtgccctcgaggattggcgcgaagccaatcccgatgccaagccgggcgacatgccc
gaggcggtcaaggcgcggctgctcgaagtctatggcgaacattatgcggacgatatccag
ggccgcgattcgacccagatcatcgagctggcgaacaatctgaagaccggtatcccgatg
ggaaccccggtgttcgacggcgcccgcgaagccgacgtgtcggcgatgctggagctggcc
ggtctcgatacgtcgggccagtcggacctgttcgacggccgcaccggggatcagttcgat
cgcaaggtcaccgtgggcatcatctacatgctcaagctgcaccatctggtcgacgacaag
atccacgcgcgttcgatcgggccgtacagcctcgtcacccagcagccgctgggcggcaag
gcccagttcggcggacagcgtttcggcgagatggaagtgtgggcgctccaggcatatggc
gccgcctacacgctccaggagatgctgacggtgaagtcggacgacgtcgtcgggcgcacc
aaggtctatgaggcgatcgtcaagggtgacgacacgttcgaggccggcattcccgagagc
ttcaacgttctcgtcaaggaaatgcgctcgctgggcctcaacgtcgaactcaagaacgac
gagccgggatttgactcggacggtgtccagatcgcggcggagtaa
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