Sphingobium sp. MI1205: K663_06785
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Entry
K663_06785 CDS
T04383
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spmi
Sphingobium sp. MI1205
Pathway
spmi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K663_06785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spmi03400
]
K663_06785
Enzymes [BR:
spmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K663_06785
DNA repair and recombination proteins [BR:
spmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K663_06785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
MFD_D3
RecG_dom3_C
UB2H
P-loop_SecA
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AMK17738
UniProt:
A0A126R6Q1
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All DBs
Position
1:complement(1411685..1415146)
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AA seq
1153 aa
AA seq
DB search
MTDLLKILKAKSPITLSGVPAGFQPWLLADIARAAPARTMFVAPDEQLMRAVADTAHYFA
PEIETVEIPAWDCLPYDRASPSLRTASARLAGLYALQGEPKGPQLVLTTLNALTQRTLTP
FRVRQLVAKLAPKERIAISRLAEMLQANGYVRTDTVHDRGEFAIRGGIVDLFPGGEEQPL
RLDFFGDEIETVRRFDPADQRTSGSVEGFTLLPASEALLDEETIKRFRGRYRETFGATAT
GDPLYQAVSDGRRLAGMEHWLPLFEERLVPMTEHLGDDTVILLDHGVPGSADARFEAIRD
YHANRVQAKSSDPGAYRPLEPKALYLDAGEWAGIVRDWPMHETTPFHEPESATVLDFEVD
GPRDFAPERAQNANVYEAVGKHIASLHKAKKKVVIASYSVGARERLSGLLIDHGLKRIAA
ADSWQEALGIAAGGSTVLTVLPLDHGFTAPDVAVLTEQDMLGDRLVRRAKRKKSADAFLA
ELATLSPGDLVVHMDHGIGRYEGLTQIPVAKAAHDCVALEYAGGDKLYVPVENLEVLSRY
GSDSDGVSLDKLGGEAWQRRKAKMKERIREIAGELLKTAAERALRAATVAEPDSAGYPAF
VDRFPYQETEDQDRAIGDVIEDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMAGMQVV
LICPTTLLARQHHMNFEERFRGFPVNIGRLSRLVPDKEAKAVKAGLADGTIDIVVGTHAL
LAKGLEFKRLGLVIVDEEQRFGVTHKERLKSLKTDVHVLTLTATPIPRTLQMAMSGLREL
SVIQTPPVDRLAVRTYIMPWDGVVIREALLREHYRGGQSFFVVPRIADLTEIEEFLRTEV
PEVRPVVAHGQMSASEVEERMSAFYDKRYDVLLSTTIVESGLDIPSANTLIIHRADRFGL
AQLYQLRGRVGRAKTRAYAYFTTPTNRIITETAEKRLKVLSDLDTLGAGFQLASHDLDIR
GAGNLVGDEQSGHIKEVGFELYQSMLEDAILEAKAGGAGVERRDSFSPQISVDAPILIPE
DYVPDLDLRMGLYRRLNEVEDRQGLEAFAAELIDRFGKLPAPTQNLFKIIEIKQNCVAAN
IAKIDVGPKGALVSFFEDRFPNPAGLVSYIQRLDGVARLRPDSKVVVNRAWADPAARLNG
ALQLSKGLAKAAG
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatcttctgaaaatcctcaaagcgaaatctcccatcaccctttcgggcgtgccg
gccgggtttcagccctggttgctggcggacatagcgcgggctgcgcctgcgcgaaccatg
tttgttgcacccgatgagcaactgatgcgggcggtggcggatacggcgcactatttcgcc
ccggaaattgagactgtcgagataccggcctgggactgcctgccctacgaccgggcgagc
ccttcgctccgtacggcttctgcgcggttggcggggctttatgcgcttcaaggtgagccg
aagggaccgcagcttgtcctgaccacgctcaatgccctgacgcaacgcacgctgacgccc
tttcgcgtccggcaactggtggccaagctcgctcccaaggagcggatcgcgatttcgcga
ctggccgagatgttgcaggccaacggctatgtgcggaccgatacggtgcacgaccgcggc
gagtttgcgattcgcggcggcatcgtcgatctgtttcccgggggcgaggagcagccgtta
cgactcgacttcttcggggacgaaattgagacggtgcgccgcttcgatcccgccgaccaa
cgaaccagcgggagcgtcgagggcttcaccctgctccccgcctccgaggcgctgctcgat
gaggagacgataaagcgttttcggggccgctatcgcgaaacgttcggagcgacagcaacg
ggcgatccactctatcaggcggtgagcgacgggcggcggctggcggggatggagcactgg
ctgccgctgttcgaggaacggctggtgccgatgaccgagcatctgggcgacgataccgtc
atcttgctcgaccacggcgtgcccggatcggcggacgcccggttcgaggcgatacgtgac
tatcacgccaatcgcgtgcaggcgaagtcatccgatccgggggcatatcggccgctggaa
cccaaagcgctttatctggatgccggggaatgggccgggatcgtgcgcgactggcccatg
catgagaccacgccctttcacgaaccggaaagcgcgaccgtcctcgatttcgaggttgac
gggccgcgtgatttcgcgcctgagcgggcgcagaacgccaatgtttatgaggcggtaggg
aaacatattgcctccctccacaaggcaaagaagaaggtcgtcatcgccagctattccgtg
ggcgcacgggaacgactttcggggctgctcatcgatcatggactgaaacggattgcggcc
gcggatagctggcaggaggcgctgggcatcgccgccggcggcagcaccgtgctgaccgtc
ctgccgctggatcatggcttcacggcgccggatgtggcggtgctgaccgaacaggacatg
ctaggtgaccggctggtgcggcgcgccaagcggaagaagagcgctgacgccttcctcgcg
gagctggcgacgctctcgccaggcgatctggtcgtgcatatggaccatggcattggccgc
tatgagggactgacacagatcccggttgcaaaggcggcgcacgattgcgtcgcccttgag
tatgcgggcggcgacaagctctacgtgccggtggagaatctggaggtcctctcccgctat
ggctccgacagcgatggcgtcagcctcgacaagctgggtggcgaggcttggcagcggcgc
aaggcgaagatgaaggagcgcatccgcgagattgcgggtgaattgctcaagacggctgcg
gagcgcgcccttcgcgcagcgaccgtggcggaacccgatagcgccggctatccagcgttc
gtggatcgcttcccctatcaggaaaccgaagatcaggatcgcgcgatcggcgatgtgatc
gaggacctgggagcgggccgtccgatggatcggttggtgtgcggagacgtaggtttcggc
aagaccgaagtcgccctgcgtgcagccttcgtcgcagcgatggctgggatgcaggttgtg
ttgatctgcccaaccaccctgctcgcccgtcagcatcatatgaatttcgaggagcgcttc
cggggttttcctgtgaacatcggacgcttgtcgcgtctggttccggacaaggaagccaag
gccgtgaaggcgggtcttgccgatggaaccatcgatatcgtggtcggcacccacgcactc
ctcgccaagggtctggagttcaagcggctcggtcttgtcatcgtcgatgaggaacagcgg
ttcggcgtcacccacaaggagcggctcaagagcctcaagaccgatgtgcatgtgctgacg
ctgactgcgacgccgatcccccgcaccttgcagatggctatgtcgggattgcgggagttg
tccgtcatccagaccccgccggtcgatcgcttggcggtgcgcacctatatcatgccctgg
gatggggtggtgatccgcgaggctctgctgcgcgaacattatcgcggggggcagagcttc
ttcgtggtgccgcgcattgccgacctgacagaaatagaggagttcctgcggaccgaagtg
ccggaggtgcgccccgtcgtcgctcacggccagatgtcggcgagcgaggtcgaggagcgc
atgtcggccttctacgacaaacggtatgatgtgcttctctcgaccacgatcgtggagagc
ggccttgatatcccctcggccaacacgctcatcatccaccgcgcggatcggttcgggctc
gcacagctctatcagttgcgcggacgcgtcggccgggccaagacgcgggcctatgcttat
ttcacgacgcccacgaaccggatcatcaccgaaacggcagagaagcggttgaaggtgctg
tccgacctggacacgcttggcgcaggcttccagttggcgagccacgatctcgatattcgc
ggggcgggcaacctggtgggcgacgagcaatcgggccatatcaaagaggtcggattcgaa
ctttatcagtcgatgctggaggacgccatcctcgaagcaaaggctggcggagccggtgtg
gaacggcgggacagcttctccccgcaaatcagcgtggacgcgccaatcctcatcccggag
gattatgtgccggatctggacctgcgcatgggtctgtaccgacgcctgaacgaggtcgaa
gatcggcaggggctggaggctttcgcagccgagttgatcgaccggttcggaaaactgccc
gcgccgacccagaacctcttcaagatcatcgagatcaagcagaattgcgtcgcagccaat
atcgcaaagatcgatgtcggcccgaagggtgcactggtcagcttcttcgaggatcgcttt
cccaaccctgcgggattggtctcatatattcagcggctggacggcgtcgcgcggttgcgg
ccggatagcaaggtcgtggttaacagagcctgggctgatcccgcagcgcgattgaatgga
gcgttgcaactttcgaagggactcgcaaaggcggcaggataa
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