KEGG   Schizosaccharomyces pombe (fission yeast): 2539042
Entry
2539042           CDS       T00076                                 
Symbol
lig4, SPOM_SPCC1183.05C
Name
(RefSeq) DNA repair ligase Lig4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Pathway
spo03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:spo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    2539042 (lig4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:spo03400]
    2539042 (lig4)
Enzymes [BR:spo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     2539042 (lig4)
DNA repair and recombination proteins [BR:spo03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     2539042 (lig4)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N RNA_ligase DNA_ligase_A_C BRCT_2 mRNA_cap_enzyme
Other DBs
NCBI-GeneID: 2539042
NCBI-ProteinID: NP_587888
PomBase: SPCC1183.05c SPCC1183.05c.1
UniProt: O74833
LinkDB
Position
III:complement(join(599520..599601,599654..600061,600101..600209,600247..600378,600416..600679,600728..601885,601940..602025,602065..602161,602227..602326,602367..602429,602517..602527,602572..602803))
AA seq 913 aa
MDEAKETVFTKPQNHSSTLEFYDFVTTLLEPLSRIGKTRKSKTSNLDPYELKRKILLDYF
NKWRQHVGPDLYPLLRLMLPDLDRERGSYGFKEFGLGKLFIRAMHLSPTSEDAKSLKNWR
GSESKHTGDFSTMLQDILQRRAYRTFPGAFTVGDVNALLDQLADASSEDTRVNILEQFYR
SLSPLELRWLIPILLKVRKYGTSEKFILSVFHPDAARLYRLCSSLKRICWELYDPSRSLD
ETETDVEVFSCFQPQLANFKKKDLHQTLEAMGNKPFWIEEKLDGERIQLHMSSGKFQFYS
RNARSYTYAYGSSYFDEQSRLTQYIIGAFDKRISQIILDGEMVTWDPVLETVIPYGSLRS
IFEDSSSHSSYSPYYVVFDILYLNGKSLVKYSLESRRRILEKVIVRESHRMSILPYKVGS
TIEDIEAELRNVIQEGSEGLVIKKPSGSYHLGERMDDWIKVKPYYLQGFGEDLDCLILGG
YFGRGKQSGKINSFLCGLRMDYTPKDHSEKFQSFVRVGGGFTYFDRDIIRKETEGKWLPW
SSDALEYMELAGTKQDFEKPDMWIHPKDSLVLQIKAAEVVVSNRFKTNYTLRFPRLEKVR
LDRSWKDALTINEFFTLKNAVEKQDNVSFHVNKKRKVSQKREKQKKFLYDEPTFKKEASP
HSDVLKNLHFVVLPPTELHETKAGLQQIIIENGGLIHQGVGNFGKERLFLVADRVSTRVS
IERSKNMCTIIRSQWVMDSVNNQRLMPQWSYLLFSKDEKYSWKTALESLSAKSLSNLLVE
LKQLDLSKEYSKISDDTSILNLTISKEEASFVGAFPFLKFTVFLDLKGIENSELYDVRMG
QYRLTKCILLWNGATIEKDISSKKLTHVVMFVEDSTRLEQLTKACELYQIEPKFVNFEWV
VNEWKKASTNILG
NT seq 2742 nt   +upstreamnt  +downstreamnt
atggacgaagccaaagagacggtatttacgaaacctcaaaatcattcaagcacccttgaa
ttctatgattttgttacaacattattggaaccgttatcaagaattggaaagactaggaaa
tccaaaacatcaaaccttgacccttatgaattaaagcgcaaaatcctcttggattacttt
aataaatggcgacaacatgtaggaccagatctttatccattacttcgactaatgcttcct
gatttggatcgtgaaagaggatcatatgggttcaaggaatttgggcttggaaaactgttt
attcgagctatgcatttgagtcctacttctgaagatgcaaaatctttgaaaaattggaga
ggatccgagtccaaacatactggagatttttctaccatgttgcaggatattttacaaaga
agggcatacaggacctttcctggtgcctttacagttggtgatgtcaacgccctgctggat
caattagcagatgcttcttctgaggatacccgagttaatattttggagcaattttataga
tccttgagtcctcttgagcttcgatggctaattcccattttactgaaagttcgaaaatac
ggaacatcggaaaaattcatactttctgtgttccatcctgatgcagctcgattatatcga
ctgtgtagctccttaaagagaatttgttgggagctctatgatcctagtcggtctcttgat
gaaactgaaacagatgtggaagtctttagttgcttccagcctcagctagccaatttcaaa
aaaaaggatctccatcaaacgctggaagccatgggaaataaaccgttttggattgaagaa
aagctagacggggagcgtattcaattacacatgagttcaggaaaattccaattctatagt
cgaaatgccaggtcgtacacttatgcctatggctctagttatttcgatgaacaatctagg
ctgacacaatacatcattggagcatttgacaaacgtatttcacaaattattcttgatgga
gaaatggttacatgggatccagtgttggaaacagtgatcccatacggaagtttaagaagc
atttttgaagattcttcctctcattcatcctacagcccttattacgttgtgttcgatatt
ttgtatcttaatgggaagtctttggtaaagtactcattagaatcaagaagacgaatatta
gagaaagtaattgttcgcgaatctcatcgtatgagtattctaccttacaaggtcggcagt
actattgaagatattgaagcagagttacggaatgttattcaagaaggatccgaagggttg
gttatcaagaaaccaagtggaagttatcaccttggagaacgaatggatgactggatcaaa
gttaagccttactatcttcagggtttcggagaagatttggattgccttattttaggcggg
tattttggccgaggtaagcagtcgggaaaaataaattcgtttctttgtggactacgcatg
gactacactccaaaagaccattctgagaagtttcagtcatttgttcgtgtaggtggtgga
tttacttactttgatcgcgatataattcgaaaggagacagaaggaaaatggcttccttgg
tcttctgatgctttagaatatatggaattggctggcactaaacaagactttgaaaagcct
gatatgtggattcatccgaaggattcattagttctccaaatcaaagctgcggaagttgta
gtatctaatcggtttaagacaaactatacgttaagatttccaagactagaaaaagtgagg
ctggatcgaagctggaaagacgcattgactatcaatgaattttttacgctaaaaaacgct
gttgaaaaacaggataacgtttcctttcatgttaataaaaaaagaaaagtgtctcaaaaa
agagaaaagcagaaaaagtttctttatgatgaacccacgtttaaaaaggaagcttctcct
cactctgatgtattgaaaaacttacattttgtcgtcctgcctccaacagaattgcatgaa
actaaagccggtttgcaacaaataataatcgaaaacggaggtttaattcatcagggtgtt
ggaaattttgggaaagaaaggttatttttagttgccgacagagtatctactagggtttct
atcgagcggagcaaaaacatgtgtactattattcgatctcaatgggtaatggacagtgta
aataatcaacgcttaatgccacaatggtcatatcttctcttttctaaagatgaaaaatat
tcatggaagacagcattggagtccttgagtgcgaaatccttgtctaatttattggtggaa
ttgaaacagctggacttgagtaaagagtactcaaaaatttccgatgacacttctattttg
aatcttacaatttcgaaggaagaagccagttttgttggtgcctttccttttttaaagttt
acagtattcttagatttgaaaggaatcgaaaattctgagttgtatgatgttcgaatgggg
caataccgcttaaccaaatgtatattgctatggaacggagctacaatagagaaagatatt
tcttcaaaaaaattgacacacgtggtaatgtttgtggaagattcaactcgtttagaacaa
ctaacaaaggcgtgcgaactatatcaaattgaacccaaatttgttaattttgaatgggtc
gttaatgagtggaaaaaggcgagtactaacatattaggctga

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