Schizosaccharomyces pombe (fission yeast): 2540475
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Entry
2540475 CDS
T00076
Symbol
lsm4, SPOM_SPBC30D10.06
Name
(RefSeq) U6 snRNP-associated protein Lsm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03018
RNA degradation
spo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
2540475 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
2540475 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spo03019
]
2540475 (lsm4)
03041 Spliceosome [BR:
spo03041
]
2540475 (lsm4)
Messenger RNA biogenesis [BR:
spo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
2540475 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
2540475 (lsm4)
Spliceosome [BR:
spo03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
2540475 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
SM-ATX
Motif
Other DBs
NCBI-GeneID:
2540475
NCBI-ProteinID:
NP_001342832
PomBase:
SPBC30D10.06
SPBC30D10.06.1
LinkDB
All DBs
Position
II:complement(join(3088425..3088595,3088661..3088852,3088891..3088893))
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AA seq
121 aa
AA seq
DB search
MLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECY
IRGNNIKYLRIQDEVLSQVAKQQAQQRENRGSRFRGRGQRGRGNYGHTAPNRRGRGRGGH
M
NT seq
366 nt
NT seq
+upstream
nt +downstream
nt
atgcttccattaacattattgaatgcaactcaaggtcgtcccatacttgttgagttaaaa
aacggtgaaacgtttaatggtcatttagagaattgtgataattacatgaacctcacactg
cgcgaagtcattcgtactatgcctgatggtgataaatttttccgtcttcctgagtgctat
attcgtggaaataatatcaaatacctgcgtattcaagatgaggtgcttagtcaagtagct
aaacaacaagcgcagcaaagagaaaatcgcggatcgcgatttcgcggacgtggtcaacgc
ggtcgtggaaactatggtcacacagcaccaaaccgtcgtggccgtggtagaggtggacac
atgtaa
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integrated database retrieval system
