KEGG   Schizosaccharomyces pombe (fission yeast): 2542058
Entry
2542058           CDS       T00076                                 
Symbol
vps41, SPOM_SPAP27G11.05C
Name
(RefSeq) HOPS complex subunit Vps41
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Pathway
spo04138  Autophagy - yeast
spo04142  Lysosome biogenesis
spo04145  Phagocytosis
spo04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:spo00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagocytosis
    2542058 (vps41)
   04142 Lysosome biogenesis
    2542058 (vps41)
   04138 Autophagy - yeast
    2542058 (vps41)
   04148 Efferocytosis
    2542058 (vps41)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:spo04131]
    2542058 (vps41)
Membrane trafficking [BR:spo04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    2542058 (vps41)
SSDB
Motif
Pfam: TPR_Vps41 Beta-prop_Vps41 Clathrin WD40_WDHD1_1st Beta-prop_HPS5 Beta-prop_IFT122_1st Beta-prop_WDR3_1st WD40_CDC20-Fz Beta-prop_ACSF4 Beta-prop_WDR5 Beta-prop_CAF1B_HIR1 Beta-prop_WDR35_2nd WD40_Prp19 WDR55 VPS18_solenoid_2nd Beta-prop_THOC3 Tas3_C-hel Beta-prop_EML_2 EIF3I
Other DBs
NCBI-GeneID: 2542058
NCBI-ProteinID: NP_593409
PomBase: SPAP27G11.05c SPAP27G11.05c.1
UniProt: Q9P7N3
LinkDB
Position
I:complement(join(1615930..1616168,1616214..1618127,1618191..1618349,1618391..1618532,1618583..1618744))
AA seq 871 aa
MSVDESNSDSEIDSISSSDEDEEPKLIYERITEKFQGCFMNDTISACAISKEHFFFGSHN
GAIYIYQKNGILLRKMILHSASVVDLSVDLESENLASCSMDGKMIISNITTRETTVHDFK
RPLLSVAIDPYYSTRSSRQVLSGGRAGKVVLSEKGWLGNKDTVLQADCGAVYKISWYTTY
IAWASDLGITVYSTEFGKVLGRLEPPKRLPNDEIFPYQLFWQSESRLVIGWSDQIMIVSI
QRSNVANELPKISLQALLEIDSIVSGVLMLGFNILTLAYIANVEDFTSAIPSQRIEGCRP
ELRLIDSSFKELCGDAIGLANYSRLQPSDYHLLPDPSSNSHSFVISPNDIVYVRERNQID
HVKYLVSKEMYAEAIDAVKKLPEIPPSLQISELAKKYIFHLLGKGQYKEAGMVIPSLYND
NLAEWEQWVFVFAENDHLEDIADFLPTGENHLSPLVYEMILAQYLATDERTFNKKLHEWP
TMLYSVSTIRNATLKKFKENQKSSTLTESLAFLYLEDNMPIDAFHLYLKLHSELCIDLIL
QHNLYDEARASVLLLMLISSKGKSSDTKSAMSSMLVQHVHSFPPQEVIMQIHSVPQFLYE
YFCEFELMYPNSLMEYGDLKLDVFAEFDRKRFFDFLVNTQCYSLDHAAQICKQYNYLDEL
VYILGRMGNNKEALMLIINELLDIGRAIRYVKEQADRELWDDLISYSLDKPEFICTLLEN
IGTDENARNLLSKIPPGTKLPHMKKSISKLLADHQSQVQLYQSCYKLFKNESISMAIKYR
EQEQSGLEFLVKDNPFNSFGDEQLDYNYRKRIPMIYDLRTKKYIRPEDVRIDTDDVFKDD
KIAYFKTRMHLKPEVQMRNKLDLLMMLYKQT
NT seq 2616 nt   +upstreamnt  +downstreamnt
atgtctgtcgatgagagcaattcggacagtgaaattgattcgatcagctcgtctgatgaa
gatgaagagcctaaactgatttatgaaagaattactgaaaaatttcaaggatgctttatg
aacgacaccatatctgcttgtgcaatctctaaggaacattttttttttggttcgcataat
ggtgcaatttacatttatcagaaaaatggtattttattacgaaaaatgatactgcactca
gcatctgtagtagatctttctgtggaccttgaaagcgaaaatttagcttcatgttctatg
gatggaaaaatgatcatttctaatattactactcgcgaaactactgttcatgatttcaag
cggcctttattgagcgtcgcaattgatccatactacagtactagatcatcccgtcaggtt
ctttcaggaggacgagctggaaaagttgtactttctgaaaaagggtggttaggaaataaa
gacaccgtgctgcaagctgattgtggagcagtttataaaatatcgtggtacacaacatat
attgcttgggcttctgacctgggtattacagtttatagcactgagttcggaaaggtttta
ggccgtttggaacccccaaaacgactaccgaatgatgagatttttccgtatcagttattc
tggcaatcagaatctaggcttgtaataggatggagtgatcaaataatgattgtctcaata
caaaggtctaatgtggctaatgaattgcctaaaatatctttacaagctttattggaaata
gattccatagtcagcggagttttgatgcttggttttaatattctcaccctggcatatatt
gccaatgttgaagattttacttctgctattccctcgcaaagaattgaaggttgtcgtcct
gaactccgtttaatagactcttctttcaaagagctttgtggtgatgccattgggctcgcc
aattactcgcgattacaaccttctgattatcatcttttgcctgatccatcgtcgaactct
cattcttttgttatatctccaaatgacatagtgtatgttagggaaaggaatcaaatcgat
catgttaaataccttgtttcaaaagaaatgtatgctgaagctattgatgctgtaaagaaa
ttgccagaaattcctccttctttacaaatttctgagctcgccaaaaaatatatattccat
ttactcggaaaaggtcaatataaagaggcaggaatggtgatcccttctctttataatgac
aaccttgcagaatgggaacaatgggtttttgtatttgctgaaaatgatcatctggaggat
attgcagatttccttccaacaggggaaaatcatttaagccctcttgtctatgagatgata
ttggctcaatatctggccacagatgagagaacttttaacaagaaacttcatgaatggcct
acaatgctttattcagtctcaaccatacgtaatgcaacactcaaaaagtttaaagaaaat
caaaaaagctcaacgctaactgaaagtcttgccttcttgtatttggaagacaacatgcca
attgatgcattccatttgtatctcaaattacatagtgagctatgcatcgacttaattttg
cagcataatctctatgatgaagcgagagcctctgttttgctgttgatgcttatatcttcc
aaaggtaaatcatcagatacaaaaagcgcaatgagtagcatgttggttcagcacgtccac
tcttttcctccgcaagaagttattatgcaaatacattcggttcctcagtttttatacgaa
tatttttgtgagttcgagctcatgtatcccaactcattaatggaatatggtgatttaaag
ttggatgtttttgcagaatttgatcgaaaacggttttttgactttttagtaaatacccaa
tgctattctttggatcatgctgcacaaatttgtaaacagtacaattaccttgacgaactt
gtttacatccttggacgtatgggaaacaataaagaggcattaatgctgataataaatgag
ctactggatattggaagggctataagatatgttaaagagcaagcagatagggagttatgg
gatgatctcatttcttattctttggataaaccagaatttatatgtacattactcgaaaac
attgggactgatgaaaatgcccgaaatctcttatcaaaaatcccccctggtacaaaactg
ccacacatgaaaaagtctatttcgaaattactagcagaccaccaatcccaagttcaattg
taccaaagttgctacaagctctttaaaaatgaaagcataagcatggctattaagtataga
gaacaagaacaatctggtctcgaatttttggtgaaggacaatccttttaattccttcggt
gatgaacaattggattataattaccggaaaagaattcctatgatttatgatttacgaaca
aaaaagtacattcgtcctgaagatgttagaatagacacagacgatgtctttaaagacgat
aaaattgcatattttaaaacaaggatgcatctgaaaccggaggttcaaatgaggaacaag
cttgatttactgatgatgctatataaacaaacttag

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