KEGG   Sphingobium phenoxybenzoativorans: KFK14_19135
Entry
KFK14_19135       CDS       T07582                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
spph  Sphingobium phenoxybenzoativorans
Pathway
spph03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:spph00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    KFK14_19135 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:spph03400]
    KFK14_19135 (ligD)
Enzymes [BR:spph01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     KFK14_19135 (ligD)
DNA repair and recombination proteins [BR:spph03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     KFK14_19135 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: QUT08354
UniProt: A0A975KBI2
LinkDB
Position
complement(3871994..3874498)
AA seq 834 aa
MATADPLAHYNAKRDFKRTREPKGKVARAGGNSFVVQKHAATRLHWDFRLEIDGVLKSWA
VTKGPSLDPADKRLAVKTEDHPLAYGSFEGNIPKGEYGGGSVMLWDRGTWESMPGKSAND
LKAGHLHFILRGDRMKGEWLLVRMKGRAGEKRENWLLRKIDDEYAREDEDLVKRALTSVL
TNRSMAEIEADTGGTQSLKGVKGIAFADKMQAAKSHNARVKTKGATARAVIPRFVKPQLA
TLVDEAPTGNGWLHEIKYDGYRAMIAVNGGTVKLFTRNGLDWTDKFGPLVENIAALDLPP
ALIDGEIVAFGEDGNPSFSALQSVLKRGYGAQRADTPFHFFAFDLLALDGMDLKLLTTIE
RKERLEALLAPVEPPIHISDYLIGAGETLYRKMCDAGQEGIIAKRIDAPYRSGRTRDWVK
VKCTRRQEFVIIGWTKSRARARAFSSLLLAQYHGHKLVYRGKVGTGFDAMIMEDLAQAMA
PLAIDAAPIEIPRAETRTAQWIKPKLVAEVAFAEFTSDDRVRHGSFLGLRTDKSAKSVKP
EKAAPAPPPASDVKISSRDRVLFPDSGQTKGDLADYYNRMAPLMLPFVANRPISLVRCPQ
GRAKKCFFQKHDSGAFGDHVLHVPIREKGGGSEDYIYIEDADGLIACVQMGTIEFHGWAS
RADAVEKPDRMIFDLDPDEGMAFAKVKQAACDIRDHLANIGLVSFAMLSGGKGVHVVVPL
TSGHDWETHKDFASRFAQALSTAEPGRFVATMSKAKRKDRIFIDWLRNQRGSTAILPYSV
RARAGAPVAVPIEWDELDEMKNAHPFNLADADKLLARFKHLKGWGFVAQQLPEI
NT seq 2505 nt   +upstreamnt  +downstreamnt
atggcgacagccgatcctctcgcccattataatgccaagcgcgatttcaaacggacacgc
gaacccaaggggaaggtcgcgagggcagggggcaacagcttcgtcgtacagaaacatgca
gccacccggctacattgggatttccggctggagatcgatggcgttctaaaaagttgggcc
gtcaccaaggggccaagccttgacccggccgacaagcggttggcggtcaagaccgaggat
catccactcgcctatggtagttttgagggtaatatccccaagggcgaatatggcggcggc
agcgtcatgctgtgggatcgtggcacctgggaatccatgccaggtaagagcgccaatgac
ctgaaggcgggccatctccattttatcctgcgtggtgaccggatgaaaggggagtggctg
ctcgttcggatgaagggccgtgccggcgagaagcgcgagaactggctgctgcgcaagatc
gacgatgaatatgccagggaggatgaggatttggtcaagcgcgcgctgacgagcgtgctg
accaatcggtcgatggccgagatcgaggcagacacgggcggcacgcagtcgcttaaaggc
gtcaagggcatagctttcgccgacaagatgcaagcagcgaaatctcacaacgcccgggtg
aaaacaaaaggcgcgaccgcaagagctgtcatcccacgctttgtgaaaccacagctcgcg
acattggtggatgaggcgccgaccggcaatggctggctgcacgagatcaaatatgacggc
tatcgcgccatgatcgcggtcaacggcggcacggtgaagctgttcacacgcaatggtctc
gactggaccgacaagtttggcccgctggtcgaaaacatcgccgcgctcgatctgccgccc
gcgctgatagacggagagatcgtggcttttggcgaagacggtaatcccagtttctcagcg
ctccagtccgtgttgaaacgcggctatggcgcgcagcgagccgacacgcccttccacttc
tttgcttttgatctgcttgccctcgacgggatggatctcaagctgctgaccaccatcgaa
cgcaaggaacggctggaggctctgttggctccagtagagccgccaatccatatctccgac
tatctaatcggcgcgggcgagacgctctatcgcaaaatgtgtgacgctgggcaggaaggc
atcattgccaagcgtattgacgccccgtaccgaagcggtcgcacgcgcgactgggtaaag
gtcaaatgcacccggcgtcaggaattcgtcatcatcggctggacgaagagcagggctaga
gcccgcgccttttcctccttgctcctggcgcaatatcacggacacaagctggtctatagg
ggcaaagtcggcaccgggttcgatgcgatgatcatggaggaccttgcccaagccatggct
cctctcgctattgatgcagcgccgatcgagattccccgcgcggagacgcgcaccgcgcaa
tggatcaagcccaagctcgtcgctgaggtcgcctttgccgaatttaccagtgatgatcgt
gtccgtcatggcagctttcttggcctgcgcacggataagtccgcaaaatccgtcaaaccg
gaaaaggctgctcctgctccaccccccgcaagcgatgtgaagatcagcagccgcgatcgc
gttctctttcctgatagcggccagaccaagggcgatctggctgactattataatcgtatg
gcgccattgatgctgccttttgtcgccaaccggccgatcagcctcgttcgctgcccacag
gggcgtgcaaagaaatgcttcttccagaaacatgacagtggcgcattcggcgatcatgtc
ctgcatgtaccgatccgcgagaagggaggtggatcggaggactatatctacattgaggat
gccgatgggcttattgcctgcgtgcagatgggcaccatcgaatttcacggctgggcgagc
cgtgctgatgctgttgaaaagccagaccgcatgatcttcgacctggatcccgatgagggc
atggcgtttgcaaaggtcaaacaggctgcttgtgatatccgcgaccatctcgccaatatc
ggccttgtctcgtttgccatgctttccggtggcaagggtgtgcatgtggttgtaccgctc
acatctggccatgactgggagacacataaggacttcgcttcgcgcttcgcccaagcgttg
agcaccgccgagcccggccgcttcgttgcgaccatgagcaaggccaaacgcaaggaccga
atcttcatcgactggctccgtaatcagcgcggaagtacggccatcctaccttattccgtc
cgggcacgagccggagcacctgtcgcggtgccgatcgaatgggacgaacttgatgaaatg
aagaacgcgcatccgttcaatcttgctgatgcagacaagcttttggcgcgattcaaacat
ctcaaaggctggggctttgtcgcgcaacaattgcctgaaatataa

DBGET integrated database retrieval system