Sphingobium phenoxybenzoativorans: KFK14_19135
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Entry
KFK14_19135 CDS
T07582
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
spph
Sphingobium phenoxybenzoativorans
Pathway
spph03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
spph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KFK14_19135 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spph03400
]
KFK14_19135 (ligD)
Enzymes [BR:
spph01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KFK14_19135 (ligD)
DNA repair and recombination proteins [BR:
spph03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KFK14_19135 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QUT08354
UniProt:
A0A975KBI2
LinkDB
All DBs
Position
complement(3871994..3874498)
Genome browser
AA seq
834 aa
AA seq
DB search
MATADPLAHYNAKRDFKRTREPKGKVARAGGNSFVVQKHAATRLHWDFRLEIDGVLKSWA
VTKGPSLDPADKRLAVKTEDHPLAYGSFEGNIPKGEYGGGSVMLWDRGTWESMPGKSAND
LKAGHLHFILRGDRMKGEWLLVRMKGRAGEKRENWLLRKIDDEYAREDEDLVKRALTSVL
TNRSMAEIEADTGGTQSLKGVKGIAFADKMQAAKSHNARVKTKGATARAVIPRFVKPQLA
TLVDEAPTGNGWLHEIKYDGYRAMIAVNGGTVKLFTRNGLDWTDKFGPLVENIAALDLPP
ALIDGEIVAFGEDGNPSFSALQSVLKRGYGAQRADTPFHFFAFDLLALDGMDLKLLTTIE
RKERLEALLAPVEPPIHISDYLIGAGETLYRKMCDAGQEGIIAKRIDAPYRSGRTRDWVK
VKCTRRQEFVIIGWTKSRARARAFSSLLLAQYHGHKLVYRGKVGTGFDAMIMEDLAQAMA
PLAIDAAPIEIPRAETRTAQWIKPKLVAEVAFAEFTSDDRVRHGSFLGLRTDKSAKSVKP
EKAAPAPPPASDVKISSRDRVLFPDSGQTKGDLADYYNRMAPLMLPFVANRPISLVRCPQ
GRAKKCFFQKHDSGAFGDHVLHVPIREKGGGSEDYIYIEDADGLIACVQMGTIEFHGWAS
RADAVEKPDRMIFDLDPDEGMAFAKVKQAACDIRDHLANIGLVSFAMLSGGKGVHVVVPL
TSGHDWETHKDFASRFAQALSTAEPGRFVATMSKAKRKDRIFIDWLRNQRGSTAILPYSV
RARAGAPVAVPIEWDELDEMKNAHPFNLADADKLLARFKHLKGWGFVAQQLPEI
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagccgatcctctcgcccattataatgccaagcgcgatttcaaacggacacgc
gaacccaaggggaaggtcgcgagggcagggggcaacagcttcgtcgtacagaaacatgca
gccacccggctacattgggatttccggctggagatcgatggcgttctaaaaagttgggcc
gtcaccaaggggccaagccttgacccggccgacaagcggttggcggtcaagaccgaggat
catccactcgcctatggtagttttgagggtaatatccccaagggcgaatatggcggcggc
agcgtcatgctgtgggatcgtggcacctgggaatccatgccaggtaagagcgccaatgac
ctgaaggcgggccatctccattttatcctgcgtggtgaccggatgaaaggggagtggctg
ctcgttcggatgaagggccgtgccggcgagaagcgcgagaactggctgctgcgcaagatc
gacgatgaatatgccagggaggatgaggatttggtcaagcgcgcgctgacgagcgtgctg
accaatcggtcgatggccgagatcgaggcagacacgggcggcacgcagtcgcttaaaggc
gtcaagggcatagctttcgccgacaagatgcaagcagcgaaatctcacaacgcccgggtg
aaaacaaaaggcgcgaccgcaagagctgtcatcccacgctttgtgaaaccacagctcgcg
acattggtggatgaggcgccgaccggcaatggctggctgcacgagatcaaatatgacggc
tatcgcgccatgatcgcggtcaacggcggcacggtgaagctgttcacacgcaatggtctc
gactggaccgacaagtttggcccgctggtcgaaaacatcgccgcgctcgatctgccgccc
gcgctgatagacggagagatcgtggcttttggcgaagacggtaatcccagtttctcagcg
ctccagtccgtgttgaaacgcggctatggcgcgcagcgagccgacacgcccttccacttc
tttgcttttgatctgcttgccctcgacgggatggatctcaagctgctgaccaccatcgaa
cgcaaggaacggctggaggctctgttggctccagtagagccgccaatccatatctccgac
tatctaatcggcgcgggcgagacgctctatcgcaaaatgtgtgacgctgggcaggaaggc
atcattgccaagcgtattgacgccccgtaccgaagcggtcgcacgcgcgactgggtaaag
gtcaaatgcacccggcgtcaggaattcgtcatcatcggctggacgaagagcagggctaga
gcccgcgccttttcctccttgctcctggcgcaatatcacggacacaagctggtctatagg
ggcaaagtcggcaccgggttcgatgcgatgatcatggaggaccttgcccaagccatggct
cctctcgctattgatgcagcgccgatcgagattccccgcgcggagacgcgcaccgcgcaa
tggatcaagcccaagctcgtcgctgaggtcgcctttgccgaatttaccagtgatgatcgt
gtccgtcatggcagctttcttggcctgcgcacggataagtccgcaaaatccgtcaaaccg
gaaaaggctgctcctgctccaccccccgcaagcgatgtgaagatcagcagccgcgatcgc
gttctctttcctgatagcggccagaccaagggcgatctggctgactattataatcgtatg
gcgccattgatgctgccttttgtcgccaaccggccgatcagcctcgttcgctgcccacag
gggcgtgcaaagaaatgcttcttccagaaacatgacagtggcgcattcggcgatcatgtc
ctgcatgtaccgatccgcgagaagggaggtggatcggaggactatatctacattgaggat
gccgatgggcttattgcctgcgtgcagatgggcaccatcgaatttcacggctgggcgagc
cgtgctgatgctgttgaaaagccagaccgcatgatcttcgacctggatcccgatgagggc
atggcgtttgcaaaggtcaaacaggctgcttgtgatatccgcgaccatctcgccaatatc
ggccttgtctcgtttgccatgctttccggtggcaagggtgtgcatgtggttgtaccgctc
acatctggccatgactgggagacacataaggacttcgcttcgcgcttcgcccaagcgttg
agcaccgccgagcccggccgcttcgttgcgaccatgagcaaggccaaacgcaaggaccga
atcttcatcgactggctccgtaatcagcgcggaagtacggccatcctaccttattccgtc
cgggcacgagccggagcacctgtcgcggtgccgatcgaatgggacgaacttgatgaaatg
aagaacgcgcatccgttcaatcttgctgatgcagacaagcttttggcgcgattcaaacat
ctcaaaggctggggctttgtcgcgcaacaattgcctgaaatataa
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