Streptococcus pneumoniae R6 (avirulent serotype 2): spr1777
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Entry
spr1777 CDS
T00060
Symbol
rpoB
Name
(GenBank) DNA-dependent RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
spr
Streptococcus pneumoniae R6 (avirulent serotype 2)
Pathway
spr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
spr1777 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spr03021
]
spr1777 (rpoB)
03400 DNA repair and recombination proteins [BR:
spr03400
]
spr1777 (rpoB)
Enzymes [BR:
spr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
spr1777 (rpoB)
Transcription machinery [BR:
spr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
spr1777 (rpoB)
DNA repair and recombination proteins [BR:
spr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
spr1777 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
NusG_add
Motif
Other DBs
NCBI-ProteinID:
AAL00580
UniProt:
Q8DNF0
LinkDB
All DBs
Position
complement(1748021..1751671)
Genome browser
AA seq
1216 aa
AA seq
DB search
MTRLGTYLQRRIILAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKAFLDHGLKE
VFEDVLPISNFTDTMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLINKETGEIK
TQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFNDKVDKNGKVGYGSTVIPNRG
AWLELESDSKDITYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVRNTVEKDIHK
NPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPRRYDLAAVGRYKINKKLNVK
TRLLNQTIAEPLVDPETGEILVEAGTIMTRSVIESIESHLDGDLNKIVYIPNDAAVVTEP
VVLQKFKVVAPTDPDRVVTIIGNANPDDKVRTVTPADILAEMSYFLNLAEGLGRVDDIDH
LGNRRIRAVGELLANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFG
SSQLSQFMDQHNPLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGP
NIGLINNLSSYGHLNKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEYTVAQANSRLNE
DGTFAEKIVMGRHQGVNQEYPANIVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANM
QRQAVPLINPQAPYVGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLDVYH
IQKFRRSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNF
EDAVIMSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIR
IGAEVKEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVK
IFTRVNGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGT
PVDIMLNPLGVPSRMNIGQVMELHLGMAARTLGIHIATPVFDGASSEDLWSTVKEAGMDS
DAKTILYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFG
GQRFGEMEVWALEAYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVL
VKELQSLGLDMRVLDEDDQEVELRDLDEGMDEDVIHVDDLEKAREKAAQEAKAAFEAEEA
EKATKAEATEEAAEQE
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaggcttggaacttatttacaaaggagaatcatcttggcaggacatgacgttcaa
tacgggaaacatcgtacccgtcgtagtttttcaagaatcaaagaagttcttgacttacca
aatttgattgaaattcaaactgactcattcaaagctttcctagaccacggtcttaaggaa
gtgtttgaagatgtattgccaatttcaaacttcacagacacaatggagttggaatttgtt
ggatatgaaatcaaggaaccaaaatacacgctagaagaagctcgtatccacgatgctagc
tactcagcaccaatttttgtaaccttccgtttgatcaataaagaaacaggcgaaatcaag
acccaagaagttttctttggtgatttcccaatcatgacagaaatgggtactttcatcatc
aatggtggtgaacgtattatcgtttctcagttggtccgctcaccaggtgtttactttaac
gacaaagtagacaaaaatggtaaggtgggctatggttcaactgttatccctaaccgtgga
gcttggttggaacttgaaagcgactcaaaagatatcacctacactcgtatcgaccgtact
cgtaagattccatttacaaccttggttcgtgctcttggtttctcaggtgatgatgaaatc
tttgatatctttggtgacagcgaattggttcgcaacactgttgaaaaagatatccacaag
aatccaatggactctcgtacagacgaagccttgaaagaaatttacgaacgccttcgtcca
ggtgagcctaagacagctgaaagctcacgtagcttgcttgtggctcgcttctttgaccca
cgtcgctatgacttggcagcagttggtcgttacaaaatcaataaaaaactcaatgttaaa
acacgtttgctcaaccaaaccattgcagagccattggtagaccctgaaactggagaaatc
ttggtagaagctggtacgattatgactcgtagcgtgattgaaagcattgaaagccatttg
gatggcgacttgaacaagattgtctacatcccaaacgatgcagccgttgtgactgagcct
gttgttcttcaaaaattcaaggttgttgctccaactgatccagatcgcgtcgtaacgatc
attggtaatgctaacccagatgacaaggttcgtacggtgactcctgcagatatccttgct
gagatgagctacttcctcaacttggctgaaggacttggccgtgtagatgatatcgaccac
cttggaaatcgtcgtatccgtgcggttggtgaattgcttgccaaccaagtacgtttggga
ctttctcgtatggaacgtaatgtccgtgaacgtatgtctgttcaggacaatgaagtcttg
acaccacaacaaattatcaatatccgtcctgtaacagctgcagttaaagaattctttggt
tcatcacagttgtcacagttcatggaccaacacaacccgctttctgagttgtctcacaaa
cgccgtttgtcagccttaggacctggtggtttgactcgtgaccgtgccggatatgaagtg
cgtgacgtgcactacactcactatggtcgtatgtgtccaatcgaaacacctgaaggacct
aacatcggtttgatcaataacttgtcatcttacggacacttgaacaaatatggttttgtt
caaacaccataccgtaaggttgaccgtgaaacaggtgttgtcacgaacgaaattgtttgg
ttgacagctgatgaagaagatgaatatactgtagctcaggctaactctcgtctgaatgaa
gatggaacctttgctgagaagattgtcatgggacgtcaccaaggggtcaaccaagagtat
ccagctaatattgttgactacatggacgtttcaccaaaacaggtagttgccgttgcgaca
gcatgtattcctttcttggaaaacgatgactccaaccgtgccctcatgggagccaatatg
caacgtcaggctgtgccattgattaatcctcaggcaccttacgttggtactggtatggaa
taccaagcagcccacgattctggtgcggctgtgattgctcagtatgatggtaaagttact
tacgcagatgctgacaaggtagaagttcgtcgtgaagatggttcattggatgtttaccac
atccaaaaattccgtcgttcaaactcaggtactgcttacaaccaacgcactctcgtaaaa
gttggtgatgtcgttgaaaaaggcgatttcatcgctgacggaccttctatggaaaatgga
gaaatggcgcttggacaaaacccaatcgttgcctacatgacttgggaaggttacaacttc
gaggatgccgttatcatgagcgaacgcttggtgaaggacgatgtctacacatctgttcac
cttgaagaatacgaatcagaaacgcgcgatacaaagcttgggcctgaagaaatcactcgc
gaaattccaaacgttggtgaagatgccctcaaagaccttgacgaaatggggattatccgt
attggtgctgaggttaaagaaggtgatattcttgtaggtaaagtaacacctaagggtgag
aaagatctttcagctgaagaacgtctcttgcacgctatctttggagacaagtctcgtgaa
gtgcgtgatacttctcttcgtgtaccacacggtgccgatggtgtcgttcgtgatgttaag
atctttacacgtgtaaatggagatgagttgcaatcaggtgttaacatgttggttcgtgtt
tacatcgctcaaaaacgtaagattaaggtcggagataaaatggccggacgtcacggaaac
aaaggggttgtctctcgtatcgttcctgtagaagacatgccttaccttccagacggaact
ccagtcgacatcatgttgaacccacttggggtgccatcacgtatgaatatcggtcaggtt
atggagcttcaccttggtatggcagctcgtactcttggtattcacattgcgacaccagtc
tttgatggagcaagttctgaagatctttggtcaactgttaaagaagcaggtatggatagc
gatgccaagacaatcctttacgatggacgtacaggtgaaccatttgataaccgtgtttct
gttggagtcatgtacatgatcaaactccaccacatggttgacgataaattgcacgcgcgt
tcagtcggaccttactcaactgttacccaacaaccactcggaggtaaagctcagtttggt
ggacaacgtttcggtgagatggaggtttgggctcttgaagcctacggtgcgtcaaatgtc
cttcaagaaatcttgacttacaagtcggacgatatcaacggacgtttgaaagcctatgaa
gctattacaaaaggcaaaccaattccaaaaccaggtgttccagaatccttccgagttctt
gtcaaagaattgcaatctcttggtcttgacatgcgtgtcctagacgaagatgaccaagaa
gtggaacttcgcgacttggatgaaggaatggacgaagatgtcatccacgtagatgacctt
gaaaaagcccgcgaaaaagcagcccaagaggctaaagcagcctttgaagctgaagaagct
gagaaagcaacaaaagcggaagcaacagaagaagctgctgaacaagaataa
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