Sphingomonas sp. R1: OIM94_03195
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Entry
OIM94_03195 CDS
T11062
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
sprr Sphingomonas sp. R1
Pathway
sprr02024
Quorum sensing
sprr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sprr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OIM94_03195 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
OIM94_03195 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sprr03019
]
OIM94_03195 (hfq)
03036 Chromosome and associated proteins [BR:
sprr03036
]
OIM94_03195 (hfq)
Messenger RNA biogenesis [BR:
sprr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
OIM94_03195 (hfq)
Chromosome and associated proteins [BR:
sprr03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
OIM94_03195 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
UYY78029
LinkDB
All DBs
Position
657913..658404
Genome browser
AA seq
163 aa
AA seq
DB search
MAEKQTSLQDLFLNSLRRSKTPVTMFLVKGVKLQGIVTWFDNFSVLLRRDGQSQLIYKHA
ISTIMPSGPMDLAALLDAAGEYQHKNPVLQEIFLNAVRKAQENVTMFLVNGVMLQGQIAA
FDLFCMLLQREGMAQLVYKHAVSTIQPMHPLNLAEETNSGDDD
NT seq
492 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaagcagacgtcgcttcaggacctgttcctcaactccctgcgccggtcgaag
acgccggtgacgatgttcctggtgaagggcgtgaagctccagggtatcgtgacctggttc
gataatttttcggtgctgctccgccgcgacggccagtcgcagctgatctacaagcatgcc
atttccaccatcatgccctcgggccctatggacctcgcggcgctgctcgatgcggcgggc
gagtatcagcacaagaacccggtgctgcaggagatcttcctcaacgccgtgcgcaaggcg
caggagaacgtcacgatgttcctggtgaacggcgtgatgctgcagggccagatcgccgcg
ttcgacctgttctgcatgctgctccagcgcgagggcatggcccagctggtctacaagcat
gccgtttccaccatccagccgatgcacccgttgaacctcgccgaggaaaccaatagcggc
gacgacgattga
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