Sphingomonas sp. R1: OIM94_07055
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Entry
OIM94_07055 CDS
T11062
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sprr Sphingomonas sp. R1
Pathway
sprr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sprr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OIM94_07055 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sprr03021
]
OIM94_07055 (rpoB)
03400 DNA repair and recombination proteins [BR:
sprr03400
]
OIM94_07055 (rpoB)
Enzymes [BR:
sprr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OIM94_07055 (rpoB)
Transcription machinery [BR:
sprr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OIM94_07055 (rpoB)
DNA repair and recombination proteins [BR:
sprr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OIM94_07055 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
B
Motif
Other DBs
NCBI-ProteinID:
UYY78733
LinkDB
All DBs
Position
1454693..1458838
Genome browser
AA seq
1381 aa
AA seq
DB search
MATKAIEGGTLKRRIRKVFGDIHEVVQMPNLIEVQRESYEQFLRSDPSIGYVSGLEKTLR
SVFPIRDFAGTAELDFVTYELEDPKFDVDECRQRGITYAAPMRVTLRLIVFEVDPDTEAR
SVLDIKEQDVYMGDMPLMTENGTFFINGTERVIVSQMHRSPGVLFDHDRGKTHASGKYLF
AARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTSLLYALGLSSEEILNYFYNRVTFLR
GPNGWQIPFQVENWRGSKPMFDIVDAKSGEVVFPAGQKISPRAANKAAKDGLETLLIPTE
EIFGRYSAYDLINEATGEIYIEAGDEVSAENLEKLDKAGIDRIELLDIDHIATGPWIRNT
LKVDKAEERQQALSDIYRVMRPGEPPTLETAESLFAGLFFDPERYDLSAVGRVKLNMRLG
LDTPDTVTTLRTEDILEVVKTLVNLKDGKGEVDDIDNLGNRRVRSVGELLENQYRVGLLR
MERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRV
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFSRVNKYGFIETP
YRKIIDGKVTNEVVYLSAMEEQKHTIAQASAELDASGGFVDDLVSARQAGEFLMALRDQV
TLMDVSPKQLVSVAASLIPFLEKDDANRALMGSNMQRQAVPLVKAEAPFVGTGMEATVAR
DSGAAIAAKRSGVVDQVDATRIVVRATGDVDASESGVDIYTLMKFQRSNQSTCINQRPLV
KVGDTVNAGDVIADGPSTEFGELALGRNVLVAFMPWNGYNYEDSILINERIVKDDVFTSI
HIDEFEVAARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYVGAEVEPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTIVDVRVFNRHGIDKDERALAIERE
EIERLRKDADDERNILNRATWSRLREMLLGQVATAAPKGLKKGVTIDEDLLDSVDRHEWW
KFAVQDDAMQGNLEAVKGQYDEAVKRIKDKFEDRREKLERGDELPPGVLKMVKVFVAVKR
KLQPGDKMAGRHGNKGIISRILPQEDMPFLEDGTPVDFVLNPLGVPSRMNVGQIFETHLG
WAARGLGRKIGDALDAWRAANPNPQAGEAPEAVKELLGTVYGDNYKAELNQRSTEQLVDL
AQNVRSGVPMATPVFDGAVEADVSAMLRMAGLDESGQVTLFDGRTGEAFDRKVTVGYKYV
LKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLT
VKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELKSQEEDDGLAEAA
E
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atggctaccaaggcaatcgagggcggcacgctgaagcgccgcatccgcaaggtgttcggc
gacatccacgaagtggtgcagatgccgaacctgatcgaggttcagcgcgaatcctacgaa
cagttcctgcggtcggacccctcgatcggctatgtctccggcctcgagaagacgctccgc
agcgtgttcccgatccgcgacttcgccggcaccgccgagctcgacttcgtgacctacgag
ctcgaggatccgaagttcgacgtggacgagtgccgccagcgcggcatcacctatgcggcg
ccgatgcgcgtcacgctgcgcctcatcgtgttcgaggtcgatcccgatacggaagcccgg
tcggtgctcgatatcaaggagcaggacgtgtacatgggcgacatgccgctcatgaccgag
aacggcacgttcttcatcaacggcaccgagcgcgtcatcgtcagccagatgcaccgttcg
ccgggcgtgctgttcgaccatgaccgcggcaagacgcacgcttcgggcaagtatctcttc
gccgcgcgcgtgatcccgtatcgcggttcgtggctggacttcgagttcgacgccaaggac
atcgtcaacgtccgtatcgaccgcaagcgcaagctgccggtcaccagcctgctgtacgcg
ctggggctgagctcggaagagatcctcaactatttctacaaccgcgtcaccttcctgcgc
ggtccgaacggctggcagatccccttccaggtggaaaactggcgcggttcgaagccgatg
ttcgacatcgtcgacgccaagtcgggcgaggtcgtgttcccggccggccagaagatcagc
ccgcgcgcagccaacaaggcggcgaaggacggtctcgagacgctgctgatccccaccgag
gaaatcttcggccgctacagcgcctatgacctgatcaacgaggcgaccggcgagatctac
atcgaagccggcgacgaagtctcggcggagaatctcgaaaagctcgacaaggccggcatc
gaccggatcgagctgctcgacatcgatcacatcgccaccggtccgtggatccgcaacacg
ctcaaggtcgacaaggccgaggagcgccagcaggccctgtccgacatctaccgcgtcatg
cgccccggcgaaccgccgacgctcgagaccgcggaatcgctgttcgccggcctgttcttc
gatccggagcgctacgacctctcggccgtgggccgcgtgaagctcaacatgcgcctgggc
ctcgacacgcccgacaccgtgaccacgctgcgcaccgaggacatcctcgaggtcgtcaag
acgctcgtgaacctcaaggacggcaagggcgaagtcgacgacatcgacaatctcggcaac
cgccgcgtgcgttcggtgggcgagctgctcgagaaccagtaccgcgtcggcctgctccgc
atggagcgcgctgtgaaggagcgcatgtcgtcggtcgacgtgtcgacggtgatgccgaac
gacctgatcaacgccaagcccgcggtcgccgcggtgcgcgagttcttcggttcgtcgcag
ctgtcgcagttcatggaccagaccaacccgctctccgaagtgacgcacaagcgtcgcgtc
tcggcgctcgggccgggcggtctcacccgtgagcgcgcaggcttcgaagtccgcgacgtt
cacccgacccactatggccgtatctgcccgatcgaaacgccggaaggcccgaacatcggt
ctgatcaactcgctcgcgaccttcagccgcgtcaacaagtacggcttcatcgagacgccg
taccgcaagatcatcgacggcaaggtgaccaacgaggtcgtctatctgtcggcgatggaa
gagcagaagcacacgatcgcgcaggcatcggccgagctcgacgcgagcggcggctttgtc
gacgacctcgtctcggcccgccaggccggcgaattcctgatggcgctgcgcgatcaggtg
acgctgatggacgtgtcgccgaagcagctcgtctcggtcgcggcctcgctgatccccttc
ctcgagaaggacgacgcgaaccgcgcactgatgggctcgaacatgcagcgtcaggccgtg
ccgctggtgaaggcggaagcgcccttcgtcggcaccggcatggaagcgaccgtggcccgc
gattccggcgccgcgatcgccgccaagcgctcgggcgtggtcgaccaggtcgacgcgacc
cgcatcgtggtgcgcgcaacgggtgacgtcgatgccagcgagagcggcgtcgacatctac
acgctgatgaagttccagcgctcgaaccagtcgacctgcatcaaccagcgtccgctggtg
aaggtgggcgacacggtcaacgccggcgacgtgatcgccgacggcccctcgaccgagttc
ggcgagctggcgctgggccgcaacgtgctcgtcgcgttcatgccctggaacggctacaac
tacgaggactcgatcctgatcaacgagcgcatcgtgaaggacgacgtgttcacgtcgatc
cacatcgatgagttcgaggtcgcggcccgcgacaccaagctcgggcccgaggacatcacc
cgcgacatcccgaacgtcggcgaggaagcgctgcgcaacctcgacgaggcgggcatcgtg
tacgttggcgccgaagtggagccgggcgacatcctggtcggcaagatcacgcccaagggc
gaaagcccgatgacgccggaagaaaagctcctccgcgccatcttcggcgaaaaggccagc
gacgtgcgcgacacctcgctgcgtctgccgccgggcgtgtcgggcacgatcgtcgacgtc
cgcgtgttcaaccgtcacggcatcgacaaggacgagcgtgccctggcgatcgagcgcgag
gaaatcgagcgtctgcgcaaggacgccgatgacgaacgcaacatcctcaaccgcgcgacc
tggtcgcgtctgcgcgagatgctgctgggtcaggtcgccaccgcagcgccgaagggcctg
aagaagggcgtcacgatcgacgaggacctgctcgacagcgtcgaccgccacgagtggtgg
aagttcgcggtgcaggacgatgccatgcagggcaacctggaggcggtgaagggccagtat
gacgaggccgtgaagcgcatcaaggacaagttcgaagaccgccgcgagaagctggagcgg
ggcgacgagctgccgccgggcgtgctgaagatggtcaaggtgttcgtcgcggtgaagcgc
aagctgcagccgggcgacaagatggccggccgccacggcaacaagggcatcatctcccgc
atcctgccgcaggaagacatgccgttcctcgaggacggtacgccggtcgacttcgtgctc
aacccgctgggcgtgccgagccgcatgaacgtcgggcagatcttcgagacccatctgggc
tgggccgcgcgcggcctgggccggaagatcggcgatgcgctcgatgcatggcgtgcagcc
aaccccaacccgcaggccggcgaagcgccggaagcggtgaaggagctgctcggcaccgtc
tatggcgataactacaaggccgagctgaaccagcgctcgaccgagcagctggtcgacctg
gcgcagaacgtccgctcgggcgtgccgatggccaccccggtcttcgacggcgcggtggaa
gccgacgtttcggcgatgctgcggatggcgggcctggacgaatccggccaggtgacgctg
ttcgacggccgcacgggcgaggcgttcgatcgcaaggtgacggtggggtacaagtatgtg
ctcaagctgcaccacctggtcgacgacaagatccacgcgcgttcgatcgggccgtacagc
ctcgtcacccagcagccgctgggcggtaaggcgcagttcggcggccagcgcttcggtgaa
atggaagtgtgggcgctccaggcgtacggcgcggcgtatacgctccaggaaatgctgacg
gtgaagtcggacgacgtggtcggccgcaccaaggtctacgaagcgatcgtcaagggcgac
gacaccttcgaggccggcattccggagagcttcaacgtgctcgtcaaggaaatgcgctcg
ctgggcctcaacgtcgagctgaagagccaggaagaagacgacggtctggccgaggcagcg
gagtaa
DBGET
integrated database retrieval system
