Shewanella psychropiezotolerans: FM037_11040
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Entry
FM037_11040 CDS
T07745
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spsh
Shewanella psychropiezotolerans
Pathway
spsh03030
DNA replication
spsh03410
Base excision repair
spsh03420
Nucleotide excision repair
spsh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FM037_11040 (ligA)
03410 Base excision repair
FM037_11040 (ligA)
03420 Nucleotide excision repair
FM037_11040 (ligA)
03430 Mismatch repair
FM037_11040 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spsh03032
]
FM037_11040 (ligA)
03400 DNA repair and recombination proteins [BR:
spsh03400
]
FM037_11040 (ligA)
Enzymes [BR:
spsh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FM037_11040 (ligA)
DNA replication proteins [BR:
spsh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FM037_11040 (ligA)
DNA repair and recombination proteins [BR:
spsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FM037_11040 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FM037_11040 (ligA)
MMR (mismatch excision repair)
DNA ligase
FM037_11040 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FM037_11040 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QDO86640
LinkDB
All DBs
Position
2479212..2481224
Genome browser
AA seq
670 aa
AA seq
DB search
MQAVALEIAELTDTLNGHNYRYYVDDAPSIPDAEYDRLLKQLKALETEHPEYCFPDSPTQ
RVGGVPLAKFDQITHLKPMLSLDNVFSDEEFEAFYNRINDKTETAPTFCCEPKLDGLAVS
ILYRDGVYERAATRGDGKTGEDITENVRTIRSIPMKLRGDNFPPLLEVRGEVIMPKQAFD
SLNERARAKGEKEFVNPRNAAAGSLRQLDSKITASRSLGFYAYALGVVEPETWGLADHHY
GQLMQLKSWGFPVSAEVKQCDSVSDVIAYYTDIMTRRSALAYEIDGVVIKVDNIAQQLKL
GFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPIFVGGVTVSNATLHN
ADEIARLGVKIKDTVIVRRAGDVIPQIVAIVAEKRPDDASEIEFPQTCPVCDSLVERIEG
EAVARCTGGLFCEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKELVESPADLFKLSAS
AITMLDRMGLKSATNLVAAIEVAKKTTFSCFLYALGIREVGEATAANLANYFKSLDKLKA
ANAEEFIKVDDVGTIVAQHLTHFFAQPHNLEVVDSLIEAGVNWPVIEEVAEESLSLKGQT
WVLTGTLTQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLTKAQDLGIKILDE
EGLLALLAGQ
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atccaagctgtcgccctagagattgccgagcttaccgataccttaaacgggcataactat
cgctattatgtcgatgatgcccctagcattcctgatgcagagtatgaccgtctacttaag
cagttgaaagcgttggaaactgagcaccctgaatactgttttcctgactctccgactcag
agagtagggggtgttcccctggctaagttcgatcaaataacgcaccttaaacctatgctt
agcctggataatgtctttagcgatgaagagtttgaagccttctataatcgcattaatgac
aaaactgaaactgcaccgacattttgttgtgagccaaaactcgatgggctggcagttagc
atcttatatcgtgatggtgtttacgagcgggcggcgacacgaggtgatggtaaaaccggc
gaagacattaccgagaatgtccgtaccatacgctctattccaatgaagcttcgcggtgat
aactttccgccgcttttggaagtgcgcggtgaagtgatcatgcctaagcaagcatttgat
tcgttgaatgagcgtgccagagcaaaaggtgagaaagaattcgtcaacccgcgcaacgca
gcagcaggcagtttgcgccaattagatagcaagatcaccgccagccgctcactgggtttt
tacgcctatgcgctaggtgtggttgagcctgaaacttggggattggccgatcatcattat
ggtcagttgatgcaacttaaatcttggggcttccctgtgagcgccgaggtgaagcaatgt
gatagcgtcagcgatgttatcgcttattacacagatatcatgactcgtcgcagtgcattg
gcctatgagattgatggcgtggtgattaaagtcgacaatattgctcagcaactcaagtta
ggtttcgttgccaaggcgccaagatgggccacagcgtttaagtttccggcacaagaggag
atgaccttactcgaaggtgtggatttccaggttggccgcaccggcgccgtgacaccagtg
gccagattgaaaccaatctttgtcggcggagtgacggtatcgaatgcgacgctgcataat
gccgatgagattgccagattgggcgttaaaattaaagatactgtgatcgttcgccgcgcc
ggcgatgtgatcccgcagattgtggctatcgtggccgagaagcgccccgatgatgctagt
gagattgaatttcctcaaacatgtcccgtgtgtgacagtttagtcgagcgtatcgaaggt
gaggcagttgcacgctgtaccggtggtctgttttgtgaagctcagcgaaaagaggccatc
aaacattttgcttctcgtaaagccttagatatcgatggcatgggcgacaaggttgtcgag
cagcttatcgataaagaattagtggagagcccggccgacctgtttaagttatcggcttcg
gcgatcactatgcttgatagaatggggcttaaatcggcaactaacctggttgcagccatc
gaagtcgccaagaagaccactttttcttgtttcctctatgcactggggatccgggaagtc
ggtgaagcaaccgcggctaacttagctaattactttaagagtttagacaagcttaaagcg
gcgaatgctgaggagtttatcaaggttgatgatgtcggcactattgtggctcagcatttg
acccacttcttcgctcagcctcataacttagaggtcgtcgatagccttatcgaggctgga
gtaaactggcccgttatcgaagaagtcgcagaagagtcgttgtcgctgaagggacagacc
tgggtattgaccggcaccttgacgcaacttaatcgcaacgatgctaaggctcagctgcag
gcgttaggcgctaaagtagcggggagtgtgtctaagaatacagactgtttagttgctggt
gaagcggcaggctctaaactgaccaaggcgcaggacttaggcattaagatactggacgaa
gagggcttactcgccttactcgccgggcaataa
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