Shewanella psychropiezotolerans: FM037_26875
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Entry
FM037_26875 CDS
T07745
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
spsh
Shewanella psychropiezotolerans
Pathway
spsh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spsh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FM037_26875 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spsh03021
]
FM037_26875 (rpoB)
03400 DNA repair and recombination proteins [BR:
spsh03400
]
FM037_26875 (rpoB)
Enzymes [BR:
spsh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FM037_26875 (rpoB)
Transcription machinery [BR:
spsh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FM037_26875 (rpoB)
DNA repair and recombination proteins [BR:
spsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FM037_26875 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QDO86229
UniProt:
A0ABX5X4E9
LinkDB
All DBs
Position
complement(6141007..6145038)
Genome browser
AA seq
1343 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKRPKVLDIPYLLSIQLDSFKKFTDQDPTGERGFEAAFRSVFPIK
SFSGNSELQYVSYKLGEPVFDVKECQIRGITYAAPLRVKLRMVLYDREAAPGTVKDIKEQ
EVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDALFVRIDRRRKLPASIMLRALDYSTQDILDLFFDRVNFKIKKDSLVMD
LVAERLRGETASYDIKDADGSILVEKGRRITARHIRQLEKSKTTELEVPVDYIAGKIAGQ
DYIDPDTGEVLVSANAEITLEDLAKLSMAGIKEISTLYINDLDNGAYMSDTLRIDSTTNR
LEALVEIYRMMRPGEPPTKDAAEGLFQNLFFSEERYDLSKVGRMKFNRRLSIGEDEGSGI
LSKEDIVAVMKNIITIRNGGDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL
SLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPYRKVEEGVV
TDQIDYLSAIEEGRYVIAQANIDIDKSGRLLEEQVACRHKGDSTFMRATDIQYMDVSPQQ
IISVAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERIIAVDSGVVVSAK
RGGSVDYVDASRIVVKVNESELRPGEAGIDIYNLTKYTRSNQNTCINQRPCCSVGDPVVR
GDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI
ARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAVEIEEMHIAQAKKD
LTEEFKILEEGVYGRARKLLLNAGFDQAQLDAIPRSQLLVQTIEDEAKQTELEQLAEQHD
ELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKI
NPVEDMPYDENGNPIDIVLNPLGVPSRMNIGQILEVHMGAAAKGIGDQITAMLEEQRQLA
EIRAYIKEVYELGDEVQQRVDIDSFTDDEVLRLAKNLKGGIPIATPAFDGAKEKEIKEML
ALAKLPTSGQRTLYDGRTGNEFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL
GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMQPGM
PESFNVLLKEIRSLGINIELDQD
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctattctgaaaagaagcgtattcgtaaagattttggtaaacgtccaaaa
gttttggatatcccttacctactctcaatacagttggactcatttaagaagttcactgat
caagatcctactggtgaacgtggctttgaagccgctttccgtagcgtttttcccatcaag
agcttttctggtaactcagagctgcagtatgtcagctataagttaggtgagcctgttttt
gatgtgaaagagtgtcagatccgcggtattacatacgcagcaccactgcgcgttaaattg
cgtatggtcttgtatgatcgtgaagctgcccccggcacagtcaaagacattaaagaacaa
gaagtctacatgggggatatccctctaatgactgacaacggtaccttcgttatcaatggt
actgagcgtgttatcgtatctcagttacaccgttcacccggtgtgttcttcgatcatgac
cgtggcaagacccactcttcaggtaaagtgttatataacgcacgtatcattccttaccgt
ggttcttggttagattttgaattcgatccaaaagatgcactcttcgtacgtatcgatcgc
cgtcgtaaacttccggcgtctatcatgttgcgtgcattagattattcgactcaggatatt
ctggatctcttcttcgatcgtgttaacttcaagatcaagaaagattcattagtgatggat
ctggttgcagagcgccttcgcggcgagactgcaagttatgacattaaagatgcagatggc
agtatcttagttgagaagggacgccgcattactgcacgtcacattcgtcagctagagaag
tcaaagactactgagctagaagtaccggtagattatatcgcgggtaagattgcgggtcag
gactacatagatccggacacaggtgaagtattggtttctgctaacgctgagatcaccctg
gaagatcttgctaagctttcgatggctggcatcaaagagataagcactctatatatcaac
gaccttgataacggtgcttatatgtcagataccctacgtattgactctacaactaaccgc
ctcgaggcgctggttgagatctatcgtatgatgcgtcctggcgagccaccaactaaagat
gcggccgaaggcctattccagaacttgttcttcagtgaagagcgttatgacctgtctaaa
gtcggtcgtatgaagttcaaccgtcgtctaagcatcggcgaagacgaaggttcaggtatc
ctatctaaggaagacatcgttgcggtaatgaagaacatcattactattcgtaacggtggc
gatgaggtcgatgatatcgatcacttgggtaaccgtcgtatccgtagcgttggcgaaatg
gctgagaaccagttccgtgttggtctagttcgtgtagaacgtgccgtacgtgaacgttta
agccttggtgatcttaatgagctaatgcctcaagatcttatcaatgctaagccaatctct
gccgcagttaaagagttcttcggttcttctcagctgtctcagtttatggatcagaacaac
ccactttcagaagtgactcacaagcgccgtatttcggctcttggtccaggtggtttgact
cgtgaacgtgccggcttcgaagttcgagatgtacacccgactcactacggtcgtttgtgt
ccaatcgaaactccggaaggcccgaacattggtctgatcaactcgttagccagtttcgcg
cgtactaactcatacggtttcctcgaaacaccttaccgtaaggtagaagaaggtgtggtt
accgatcagatagattatctgtcggcaatcgaagaaggtcgttatgttatcgctcaggcg
aacatagatatagataagagcggacgtctactcgaagagcaggttgcttgtcgtcataag
ggtgattcaacctttatgcgtgctaccgatatccagtatatggatgtatcaccgcagcag
attatctctgtagcagcctcactgattccgttcctggaacacgatgatgctaaccgtgcc
ttgatgggcgcgaacatgcaacgtcaagcagtaccaacactaagagccgataagccatta
gtaggtactggtatcgagcgtattattgcggtcgattcaggcgttgtggtttctgctaaa
cgtggtggtagtgtcgattatgtcgatgccagccgtatcgtggtcaaagttaacgaatct
gagctacgcccaggcgaagccggtatcgatatctataacctgactaagtacacacgttct
aaccagaatacctgtattaaccaacgtccttgttgttctgttggtgatcctgtggttcgt
ggtgatgtattggccgatggtccttcaacggatctgggtgatctggctcttggtcagaac
atgcgtatcgcgtttatgccttggaacggttacaacttcgaggattcaatcctcatctct
gagcgtgtagctcaggaagatcgtttcaccactatccacattcaggagctttcttgtatc
gctcgtgatactaagttgggtagtgaagagatcactgctgatattccaaacgtgggtgag
tctgcgctttctaagctggacgaatcgggtatcgtttatatcggtgccgaagttaagggt
ggcgacatcctggttggtaaggtgacacctaagggtgaaactcagctgactccagaagag
aaactcctccgagctattttcggtgagaaggcctctgacgttaaagacagctcgctacgt
gtacctaactcagtgaaaggtactatcatcgacgtccaggtatttacccgtgacggcgtt
gaaaaagacaagcgtgcggttgaaatcgaagagatgcatatcgctcaggctaagaaagat
ctgaccgaagagttcaaaatcctcgaagagggtgtttatggacgtgcacgtaagctgcta
ttgaatgcaggcttcgatcaggcgcaactcgatgctattcctcgttctcagttgctggtt
cagacaattgaagatgaagctaagcagaccgaacttgagcagcttgccgagcagcatgac
gaattgaaagccgacttcgataagaagtttgagatcaagcgtcgtaaaatcacccaaggt
gatgacttagcacctggcgtacttaagatagttaaggtttaccttgctgttaaacgtact
atccagcctggtgataagatggcgggtcgtcatggtaacaagggtgttatctctaagatt
aaccctgttgaagacatgccttacgatgagaatggtaacccaattgacatcgtattgaac
ccgctcggtgtaccatctcgtatgaacatcggtcagatcttagaggttcacatgggcgca
gcagctaaaggtatcggtgatcagatcaccgcaatgcttgaagagcagcgtcaattagcc
gagattcgcgcttacatcaaagaagtatatgagttaggtgacgaggtgcagcagcgcgtc
gatatcgattcgtttaccgatgatgaagtattgcgtctggctaagaaccttaagggtggt
attccgattgcgactccagcattcgatggtgcgaaagagaaagagatcaaggaaatgctt
gcacttgctaagcttcctacctctggtcaacgtaccttgtatgatggtcgtaccggtaat
gagtttgagcgtcaggtaaccgtaggttacatgtatatgctcaaacttaaccacttggtt
gacgacaagatgcatgctcgttctacgggttcgtacagtcttgttactcaacagccattg
ggtggtaaagctcagtttggtggtcagcgtttcggagagatggaagtatgggcactagaa
gcatacggtgctgcatatactcttcaagagatgctaaccgttaagtctgatgatgttaac
ggtcgtactcagatgtataagaacatcgtcgacggtaatcaccagatgcaaccaggcatg
ccagagtcattcaacgtactgttgaaggaaatccgttcactcggtattaatatcgagttg
gatcaagactaa
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