Sphingomonas sp. So64.6b: G4G27_02900
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Entry
G4G27_02900 CDS
T11422
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
spso Sphingomonas sp. So64.6b
Pathway
spso03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spso00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G4G27_02900 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spso03021
]
G4G27_02900 (rpoB)
03400 DNA repair and recombination proteins [BR:
spso03400
]
G4G27_02900 (rpoB)
Enzymes [BR:
spso01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G4G27_02900 (rpoB)
Transcription machinery [BR:
spso03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G4G27_02900 (rpoB)
DNA repair and recombination proteins [BR:
spso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G4G27_02900 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QNA83079
LinkDB
All DBs
Position
complement(627413..631564)
Genome browser
AA seq
1383 aa
AA seq
DB search
MATKAIEGGTAKRRIRKVFGNIHEVVQMPNLIEVQRESYEQFLRSDPSIGYVSGLEKTLR
SVFPIRDFAGTAELDFVNYELEPPKFDTDECRQRGITYAAPMRVTLRLIVFEVDADTDSR
SVLDIKEQDVYMGDMPLMTGNGTFIINGTERVIVSQMHRSPGVLFDHDRGKTHASGKYLF
AARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTALLYALGLTGEEILNYFYNRVTFVR
GQGGWIIPFQAENWRGQKPMFDIIDAKTGEVVFPSGQKISPRAANKAAKDGLTDLLIPTE
EIFGRYSAYDLINESTGQIYIEAGDEVSAENLELLDKAGIDRIELLDIDHVATGPWIRNT
LKADKAEEREQALSDIYRVMRPGEPPTLETAESLFSGLFFDPDRYDLSAVGRVKLNMRLD
LDAEDTVTTLRTEDILAVVKTLVDLKDGKGDIDDIDNLGNRRVRSVGELLENQYRVGLLR
MERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRV
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSRVNKYGFIETP
YRKVVDHKVTDDVVYLSAMEEAKHTIAQANAELDASKGFVEELVSSRQSGEFLMAIPDNI
TLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVQAEAPFVGTGMEETVAR
DSGAAISAKRAGIVDQVDAARIVIRATGDVEAGQSGVDIYTLMKFQRSNQNTCINQRPLV
KVGEVVNVGEVIADGPSTEFGELALGRNSLVAFMPWNGYNYEDSILISERIVKDDVFTSI
HIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILAGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVEVRVFNRHGIDKDERAMAIERE
EIERLKKDSDDERSILNRATWSRLREMLLGQTATAAPKGVKKGVVVDQDLLDSVDRHEWW
KFAVADDKTQSDLEAVKVQYDDAAKLIQDKFLDRREKLERGDELPPGVLKMVKVFVAVKR
KLQPGDKMAGRHGNKGVISRILPAEDMPFLADGTPVDIVLNPLGVPSRMNVGQIFETHLG
WAARGLGQQITKALEDWREANPDAKPGAMPEVVRDRLKTVYGEQYHAEIDARSGDEIIEL
AQNLKGGVPMATPVFDGAREADVSAMLALAGLDTSGQSDLFDGRTGDKFDRKVTVGYIYM
LKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLT
VKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELKSIEQFDSDGVAI
AAE
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaaggcaatcgagggcggcaccgcaaagcgccgcatccgcaaggtgttcggc
aacatccacgaagtggtgcagatgccgaacctgatcgaggttcagcgcgaatcctacgaa
cagttcctgcggtctgatccctcgatcggctatgtctcgggcctcgaaaagacgctgcgc
tcggtcttcccgatccgcgatttcgccggcaccgccgaactcgacttcgtcaattacgaa
ctcgagccgcccaagttcgacaccgacgaatgccgtcagcgcggcatcacctatgcggcg
ccgatgcgcgttacacttcgcctgatcgtgttcgaggtcgatgccgacacggattcgcgc
tcggtcctcgatatcaaggagcaggacgtctacatgggcgacatgcccctgatgacgggc
aacggcaccttcatcatcaacggcacggaacgcgtgatcgtcagccagatgcaccgctcg
ccgggcgtcctgttcgaccatgaccgtggcaagacccacgcatcgggcaagtatctcttc
gctgcgcgcgtcattccgtatcgcggttcgtggctcgacttcgagttcgacgcgaaggac
atcgtcaacgtccgtatcgaccgtaagcgcaagctgccggtcacggcgctcctgtacgcg
ctcggcctgaccggcgaggaaatcctcaattacttctacaaccgcgtcaccttcgtgcgc
ggccagggcggctggatcattccgttccaggcggagaattggcgcggccagaagccgatg
ttcgacatcatcgatgcgaagaccggcgaagtcgtgttcccctcgggccagaagatctcc
ccgcgcgctgccaacaaggcggccaaggacggcctcaccgacctgctcatcccgaccgag
gaaatcttcggccgctacagcgcctatgacctgatcaacgagtcgaccggccagatctat
atcgaagccggcgacgaagtgtcggccgagaatctcgaactgctcgacaaggctggcatc
gatcgcatcgagctgctcgacatcgaccatgtcgcgaccgggccgtggattcgcaacacg
ctcaaggccgacaaggccgaagagcgcgagcaggctctgtccgacatctatcgcgtgatg
cgccccggcgagccgccgacgctcgaaaccgcagagtcgctgttcagcggcctgttcttc
gatcccgaccgctacgacctgtcggccgtcggccgcgtcaagctcaacatgcgcctcgac
ctcgacgccgaggatacggtcaccactttgcgcaccgaggatatcctcgctgtcgtcaag
acgctggtcgacctgaaggacggcaagggcgacatcgacgacatcgacaacctcggcaac
cgccgcgtgcgttcggtcggcgagttgctcgagaaccagtatcgcgtcggcctgctccgc
atggagcgcgccgtgaaggagcgcatgagctcggtcgacgtgtcgaccgtgatgcccaac
gacctgatcaacgccaagccggcggtcgccgcggtgcgtgaattcttcggctcgtcgcag
ctgtcgcagttcatggatcagaccaacccgctgtcggaagttacccacaagcgccgcgtg
tcggcacttgggccgggtggtctgacgcgtgagcgcgccggcttcgaagtccgcgacgtt
cacccgacccattatggccgtatctgcccgatcgaaacgccggaaggcccgaacatcggt
ctgatcaacagcctcgcctcgttcagccgcgtcaacaaatacggcttcatcgagacgccg
taccgcaaggtggtcgaccataaggtcaccgacgacgtggtttatctgtctgcgatggaa
gaagccaagcacacgatcgcgcaggccaacgccgagctcgacgcgtcgaagggctttgtc
gaggaactggtgtcgtcgcgtcagtcgggtgaattcctgatggcgatccccgacaacatc
acgctgatggacgttagccccaagcagctcgtctcggtcgccgcatcgcttattccgttc
ctggaaaacgatgacgccaaccgcgcgctgatgggctcgaacatgcagcgtcaggctgtg
ccgctcgtccaggccgaggcgccgttcgtcggcacgggcatggaagagaccgtggcacgc
gattctggcgcggcgatctccgccaagcgtgcaggcatcgtcgatcaggtcgacgcggcc
cgtatcgtgatccgcgcaaccggcgatgtcgaagccggtcagtcgggcgtcgatatctac
acgctgatgaagttccagcgctcgaaccagaacacctgcatcaaccagcgtccgctggtg
aaggtcggtgaagtggtcaatgtcggcgaagtgatcgccgacggcccctcgaccgagttc
ggtgagctcgcgctgggccgcaacagcctcgtcgcgttcatgccgtggaacggctacaat
tatgaggattcgatcctcatctccgaacgcatcgtgaaggacgacgtcttcacctcgatt
catatcgaggaattcgaagtcatggcgcgcgacaccaagctcgggccggaggacatcacg
cgcgatatcccgaacgtcggcgaggaagcacttcgcaacctcgacgaagcgggcatcgtc
tatatcggcgccgaagtggagccgggcgacatcctggccggcaagatcacccccaagggt
gaatcgccgatgacgccggaggaaaagctgctccgcgccatcttcggtgaaaaggcgtcg
gacgtgcgcgatacctcgctgcgcttgccgccgggcgttgccggcaccgtcgtcgaggtc
cgggtgttcaaccgccacggcatcgacaaggatgagcgcgcgatggcgatcgagcgcgaa
gaaatcgagcgcctgaagaaggactcggacgacgaacgcagcatcctcaaccgcgcgacc
tggtcgcgcctgcgggaaatgctgctcggccagaccgcgactgccgcgccgaagggcgtc
aagaagggtgtggtcgtcgaccaggacctgctcgacagcgtcgatcgccacgaatggtgg
aagttcgccgttgccgatgacaagacccagagcgatctggaagcggtcaaggtgcagtac
gacgatgcggcaaagctgatccaggacaagttcctcgatcgtcgcgagaagctggagcgc
ggtgacgagctgccccctggcgtgctcaagatggtcaaggtgttcgtcgcggtgaagcgc
aagctgcagccgggcgacaagatggccggccggcacggcaacaagggcgtgatcagccgc
atcctgccagcggaggacatgccgttcctcgccgacgggacgccggtcgatatcgtgctc
aacccgctcggcgtgccgtcgcgcatgaacgtcggtcagatcttcgagacgcatctcggc
tgggccgcgcgcggcctcggtcagcagatcaccaaggcacttgaggattggcgcgaagcc
aaccccgacgccaagccgggtgcaatgcccgaagtggtccgtgatcgtctgaagaccgtg
tatggcgagcagtatcatgccgagatcgacgcccgctcgggtgacgagatcatcgaactg
gcgcagaaccttaagggcggcgtgccgatggcgacgccggtgttcgacggtgcccgcgaa
gccgatgtttcggcgatgctggcgctggcgggtctcgatacgtcggggcagagcgatctg
ttcgacggacgtaccggcgacaagttcgaccgcaaggtcaccgtcggctacatctatatg
ctgaagcttcaccatctcgtggacgacaagatccacgcccggtcgatcggcccctactcg
ctcgtcacgcagcagccgctgggtggtaaggcgcagttcggtggtcagcgcttcggcgag
atggaggtctgggcactccaggcttacggcgccgcctataccttgcaggaaatgctcacg
gtgaagtccgacgacgtggtcggccgcaccaaggtctatgaagcgatcgtcaagggcgac
gacacgttcgaggccggcattcccgagagcttcaacgtgctcgtcaaggaaatgcgctcg
ctgggtctgaacgtcgagctgaagagcatcgagcagttcgactccgacggcgtcgcgatc
gcggcggagtga
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integrated database retrieval system
